data_5VXE
#
_model_server_result.job_id            yOGQ97t0rEOuYzcu6wf5TA 
_model_server_result.datetime_utc      '2024-11-28 07:26:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vxe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5VXE 
#
_exptl.entry_id    5VXE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              225.284 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VXE 
_cell.length_a            89.965 
_cell.length_b            89.965 
_cell.length_c            69.577 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VXE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.384667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 38 A HIS 38 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc2 A OD1 ASP 76 A ASP 76 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc3 D MN MN . A MN 403 1_555 E O HOH . A HOH 508 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc4 D MN MN . A MN 403 1_555 E O HOH . A HOH 516 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc5 D MN MN . A MN 403 1_555 E O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc6 D MN MN . A MN 403 1_555 E O HOH . A HOH 554 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
#
_chem_comp.formula           'C12 H19 N O3' 
_chem_comp.formula_weight    225.284 
_chem_comp.id                CER 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CERULENIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 CER sing 70 n n 
C1 C2 CER sing 71 n n 
C1 O2 CER doub 72 n n 
N1 HN11 CER sing 73 n n 
N1 HN12 CER sing 74 n n 
O1 C4 CER doub 75 n n 
C2 C3 CER sing 76 n n 
C2 H21 CER sing 77 n n 
C2 H22 CER sing 78 n n 
C3 O3 CER sing 79 n n 
C3 C4 CER sing 80 n n 
C3 H31 CER sing 81 n n 
O3 HO3 CER sing 82 n n 
C4 C5 CER sing 83 n n 
C5 C6 CER sing 84 n n 
C5 H51 CER sing 85 n n 
C5 H52 CER sing 86 n n 
C6 C7 CER sing 87 n n 
C6 H61 CER sing 88 n n 
C6 H62 CER sing 89 n n 
C7 C8 CER doub 90 e n 
C7 H71 CER sing 91 n n 
C8 C9 CER sing 92 n n 
C8 H81 CER sing 93 n n 
C9 C10 CER sing 94 n n 
C9 H91 CER sing 95 n n 
C9 H92 CER sing 96 n n 
C10 C11 CER doub 97 e n 
C10 H101 CER sing 98 n n 
C11 C12 CER sing 99 n n 
C11 H111 CER sing 100 n n 
C12 H121 CER sing 101 n n 
C12 H122 CER sing 102 n n 
C12 H123 CER sing 103 n n 
#
_atom_sites.entry_id                     5VXE 
_atom_sites.fract_transf_matrix[1][1]    0.011115 
_atom_sites.fract_transf_matrix[1][2]    0.006417 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CER A 1 401 1 CER CER . 
C 3 GOL A 1 402 1 GOL GOL . 
D 4 MN A 1 403 1 MN MN . 
E 5 HOH A 1 501 3 HOH HOH . 
E 5 HOH A 2 502 3 HOH HOH . 
E 5 HOH A 3 503 57 HOH HOH . 
E 5 HOH A 4 504 1 HOH HOH . 
E 5 HOH A 5 505 1 HOH HOH . 
E 5 HOH A 6 506 40 HOH HOH . 
E 5 HOH A 7 507 30 HOH HOH . 
E 5 HOH A 8 508 2 HOH HOH . 
E 5 HOH A 9 509 32 HOH HOH . 
E 5 HOH A 10 510 44 HOH HOH . 
E 5 HOH A 11 511 26 HOH HOH . 
E 5 HOH A 12 512 6 HOH HOH . 
E 5 HOH A 13 513 37 HOH HOH . 
E 5 HOH A 14 514 2 HOH HOH . 
E 5 HOH A 15 515 39 HOH HOH . 
E 5 HOH A 16 516 1 HOH HOH . 
E 5 HOH A 17 517 4 HOH HOH . 
E 5 HOH A 18 518 2 HOH HOH . 
E 5 HOH A 19 519 1 HOH HOH . 
E 5 HOH A 20 520 4 HOH HOH . 
E 5 HOH A 21 521 7 HOH HOH . 
E 5 HOH A 22 522 34 HOH HOH . 
E 5 HOH A 23 523 14 HOH HOH . 
E 5 HOH A 24 524 6 HOH HOH . 
E 5 HOH A 25 525 56 HOH HOH . 
E 5 HOH A 26 526 1 HOH HOH . 
E 5 HOH A 27 527 33 HOH HOH . 
E 5 HOH A 28 528 4 HOH HOH . 
E 5 HOH A 29 529 19 HOH HOH . 
E 5 HOH A 30 530 5 HOH HOH . 
E 5 HOH A 31 531 3 HOH HOH . 
E 5 HOH A 32 532 52 HOH HOH . 
E 5 HOH A 33 533 8 HOH HOH . 
E 5 HOH A 34 534 41 HOH HOH . 
E 5 HOH A 35 535 29 HOH HOH . 
E 5 HOH A 36 536 5 HOH HOH . 
E 5 HOH A 37 537 5 HOH HOH . 
E 5 HOH A 38 538 9 HOH HOH . 
E 5 HOH A 39 539 38 HOH HOH . 
E 5 HOH A 40 540 2 HOH HOH . 
E 5 HOH A 41 541 5 HOH HOH . 
E 5 HOH A 42 542 4 HOH HOH . 
E 5 HOH A 43 543 16 HOH HOH . 
E 5 HOH A 44 544 2 HOH HOH . 
E 5 HOH A 45 545 6 HOH HOH . 
E 5 HOH A 46 546 17 HOH HOH . 
E 5 HOH A 47 547 48 HOH HOH . 
E 5 HOH A 48 548 21 HOH HOH . 
E 5 HOH A 49 549 1 HOH HOH . 
E 5 HOH A 50 550 5 HOH HOH . 
E 5 HOH A 51 551 46 HOH HOH . 
E 5 HOH A 52 552 4 HOH HOH . 
E 5 HOH A 53 553 13 HOH HOH . 
E 5 HOH A 54 554 3 HOH HOH . 
E 5 HOH A 55 555 2 HOH HOH . 
E 5 HOH A 56 556 1 HOH HOH . 
E 5 HOH A 57 557 1 HOH HOH . 
E 5 HOH A 58 558 45 HOH HOH . 
E 5 HOH A 59 559 20 HOH HOH . 
E 5 HOH A 60 560 1 HOH HOH . 
E 5 HOH A 61 561 47 HOH HOH . 
E 5 HOH A 62 562 1 HOH HOH . 
E 5 HOH A 63 563 25 HOH HOH . 
E 5 HOH A 64 564 3 HOH HOH . 
E 5 HOH A 65 565 1 HOH HOH . 
E 5 HOH A 66 566 4 HOH HOH . 
E 5 HOH A 67 567 36 HOH HOH . 
E 5 HOH A 68 568 6 HOH HOH . 
E 5 HOH A 69 569 2 HOH HOH . 
E 5 HOH A 70 570 3 HOH HOH . 
E 5 HOH A 71 571 50 HOH HOH . 
E 5 HOH A 72 572 22 HOH HOH . 
E 5 HOH A 73 573 3 HOH HOH . 
E 5 HOH A 74 574 2 HOH HOH . 
E 5 HOH A 75 575 3 HOH HOH . 
E 5 HOH A 76 576 31 HOH HOH . 
E 5 HOH A 77 577 42 HOH HOH . 
E 5 HOH A 78 578 24 HOH HOH . 
E 5 HOH A 79 579 6 HOH HOH . 
E 5 HOH A 80 580 2 HOH HOH . 
E 5 HOH A 81 581 15 HOH HOH . 
E 5 HOH A 82 582 35 HOH HOH . 
E 5 HOH A 83 583 7 HOH HOH . 
E 5 HOH A 84 584 5 HOH HOH . 
E 5 HOH A 85 585 10 HOH HOH . 
E 5 HOH A 86 586 11 HOH HOH . 
E 5 HOH A 87 587 49 HOH HOH . 
E 5 HOH A 88 588 12 HOH HOH . 
E 5 HOH A 89 589 43 HOH HOH . 
E 5 HOH A 90 590 23 HOH HOH . 
E 5 HOH A 91 591 54 HOH HOH . 
E 5 HOH A 92 592 51 HOH HOH . 
E 5 HOH A 93 593 8 HOH HOH . 
E 5 HOH A 94 594 4 HOH HOH . 
E 5 HOH A 95 595 7 HOH HOH . 
E 5 HOH A 96 596 27 HOH HOH . 
E 5 HOH A 97 597 55 HOH HOH . 
E 5 HOH A 98 598 9 HOH HOH . 
E 5 HOH A 99 599 1 HOH HOH . 
E 5 HOH A 100 600 1 HOH HOH . 
E 5 HOH A 101 601 12 HOH HOH . 
E 5 HOH A 102 602 53 HOH HOH . 
E 5 HOH A 103 603 5 HOH HOH . 
E 5 HOH A 104 604 1 HOH HOH . 
E 5 HOH A 105 605 9 HOH HOH . 
E 5 HOH A 106 606 28 HOH HOH . 
E 5 HOH A 107 607 1 HOH HOH . 
E 5 HOH A 108 608 7 HOH HOH . 
E 5 HOH A 109 609 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CER . A . B 2 24.44 -29.278 10.334 0.7 22.05 ? C1 CER 401 A 1 
HETATM 2 N N1 CER . A . B 2 24.749 -28.023 10.518 0.7 25.94 ? N1 CER 401 A 1 
HETATM 3 O O1 CER . A . B 2 24.16 -26.133 9.23 0.7 32.19 ? O1 CER 401 A 1 
HETATM 4 C C2 CER . A . B 2 23.826 -29.525 9.019 0.7 26.44 ? C2 CER 401 A 1 
HETATM 5 O O2 CER . A . B 2 24.78 -30.039 11.231 0.7 16.9 ? O2 CER 401 A 1 
HETATM 6 C C3 CER . A . B 2 23.224 -28.164 8.633 0.7 27.59 ? C3 CER 401 A 1 
HETATM 7 O O3 CER . A . B 2 22.676 -28.348 7.395 0.7 27.4 ? O3 CER 401 A 1 
HETATM 8 C C4 CER . A . B 2 24.295 -27.173 8.566 0.7 33.32 ? C4 CER 401 A 1 
HETATM 9 C C5 CER . A . B 2 25.453 -27.494 7.67 0.7 30.29 ? C5 CER 401 A 1 
HETATM 10 C C6 CER . A . B 2 26.806 -27.107 8.236 0.7 31.07 ? C6 CER 401 A 1 
HETATM 11 C C7 CER . A . B 2 27.622 -26.753 7.009 0.7 28.78 ? C7 CER 401 A 1 
HETATM 12 C C8 CER . A . B 2 28.733 -27.404 6.699 0.7 33.39 ? C8 CER 401 A 1 
HETATM 13 C C9 CER . A . B 2 29.585 -27.074 5.493 0.7 33.1 ? C9 CER 401 A 1 
HETATM 14 C C10 CER . A . B 2 29.368 -28.094 4.421 0.7 33.62 ? C10 CER 401 A 1 
HETATM 15 C C11 CER . A . B 2 30.338 -28.366 3.527 0.7 38.75 ? C11 CER 401 A 1 
HETATM 16 C C12 CER . A . B 2 30.087 -29.413 2.456 0.7 38.92 ? C12 CER 401 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#