data_5VXE # _model_server_result.job_id VzGdMVV38335X6YaYlXkAA _model_server_result.datetime_utc '2024-11-24 14:59:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5VXE # _exptl.entry_id 5VXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VXE _cell.length_a 89.965 _cell.length_b 89.965 _cell.length_c 69.577 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.384667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 38 A HIS 38 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A OD1 ASP 76 A ASP 76 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 D MN MN . A MN 403 1_555 E O HOH . A HOH 508 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc4 D MN MN . A MN 403 1_555 E O HOH . A HOH 516 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 D MN MN . A MN 403 1_555 E O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 D MN MN . A MN 403 1_555 E O HOH . A HOH 554 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VXE _atom_sites.fract_transf_matrix[1][1] 0.011115 _atom_sites.fract_transf_matrix[1][2] 0.006417 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CER A 1 401 1 CER CER . C 3 GOL A 1 402 1 GOL GOL . D 4 MN A 1 403 1 MN MN . E 5 HOH A 1 501 3 HOH HOH . E 5 HOH A 2 502 3 HOH HOH . E 5 HOH A 3 503 57 HOH HOH . E 5 HOH A 4 504 1 HOH HOH . E 5 HOH A 5 505 1 HOH HOH . E 5 HOH A 6 506 40 HOH HOH . E 5 HOH A 7 507 30 HOH HOH . E 5 HOH A 8 508 2 HOH HOH . E 5 HOH A 9 509 32 HOH HOH . E 5 HOH A 10 510 44 HOH HOH . E 5 HOH A 11 511 26 HOH HOH . E 5 HOH A 12 512 6 HOH HOH . E 5 HOH A 13 513 37 HOH HOH . E 5 HOH A 14 514 2 HOH HOH . E 5 HOH A 15 515 39 HOH HOH . E 5 HOH A 16 516 1 HOH HOH . E 5 HOH A 17 517 4 HOH HOH . E 5 HOH A 18 518 2 HOH HOH . E 5 HOH A 19 519 1 HOH HOH . E 5 HOH A 20 520 4 HOH HOH . E 5 HOH A 21 521 7 HOH HOH . E 5 HOH A 22 522 34 HOH HOH . E 5 HOH A 23 523 14 HOH HOH . E 5 HOH A 24 524 6 HOH HOH . E 5 HOH A 25 525 56 HOH HOH . E 5 HOH A 26 526 1 HOH HOH . E 5 HOH A 27 527 33 HOH HOH . E 5 HOH A 28 528 4 HOH HOH . E 5 HOH A 29 529 19 HOH HOH . E 5 HOH A 30 530 5 HOH HOH . E 5 HOH A 31 531 3 HOH HOH . E 5 HOH A 32 532 52 HOH HOH . E 5 HOH A 33 533 8 HOH HOH . E 5 HOH A 34 534 41 HOH HOH . E 5 HOH A 35 535 29 HOH HOH . E 5 HOH A 36 536 5 HOH HOH . E 5 HOH A 37 537 5 HOH HOH . E 5 HOH A 38 538 9 HOH HOH . E 5 HOH A 39 539 38 HOH HOH . E 5 HOH A 40 540 2 HOH HOH . E 5 HOH A 41 541 5 HOH HOH . E 5 HOH A 42 542 4 HOH HOH . E 5 HOH A 43 543 16 HOH HOH . E 5 HOH A 44 544 2 HOH HOH . E 5 HOH A 45 545 6 HOH HOH . E 5 HOH A 46 546 17 HOH HOH . E 5 HOH A 47 547 48 HOH HOH . E 5 HOH A 48 548 21 HOH HOH . E 5 HOH A 49 549 1 HOH HOH . E 5 HOH A 50 550 5 HOH HOH . E 5 HOH A 51 551 46 HOH HOH . E 5 HOH A 52 552 4 HOH HOH . E 5 HOH A 53 553 13 HOH HOH . E 5 HOH A 54 554 3 HOH HOH . E 5 HOH A 55 555 2 HOH HOH . E 5 HOH A 56 556 1 HOH HOH . E 5 HOH A 57 557 1 HOH HOH . E 5 HOH A 58 558 45 HOH HOH . E 5 HOH A 59 559 20 HOH HOH . E 5 HOH A 60 560 1 HOH HOH . E 5 HOH A 61 561 47 HOH HOH . E 5 HOH A 62 562 1 HOH HOH . E 5 HOH A 63 563 25 HOH HOH . E 5 HOH A 64 564 3 HOH HOH . E 5 HOH A 65 565 1 HOH HOH . E 5 HOH A 66 566 4 HOH HOH . E 5 HOH A 67 567 36 HOH HOH . E 5 HOH A 68 568 6 HOH HOH . E 5 HOH A 69 569 2 HOH HOH . E 5 HOH A 70 570 3 HOH HOH . E 5 HOH A 71 571 50 HOH HOH . E 5 HOH A 72 572 22 HOH HOH . E 5 HOH A 73 573 3 HOH HOH . E 5 HOH A 74 574 2 HOH HOH . E 5 HOH A 75 575 3 HOH HOH . E 5 HOH A 76 576 31 HOH HOH . E 5 HOH A 77 577 42 HOH HOH . E 5 HOH A 78 578 24 HOH HOH . E 5 HOH A 79 579 6 HOH HOH . E 5 HOH A 80 580 2 HOH HOH . E 5 HOH A 81 581 15 HOH HOH . E 5 HOH A 82 582 35 HOH HOH . E 5 HOH A 83 583 7 HOH HOH . E 5 HOH A 84 584 5 HOH HOH . E 5 HOH A 85 585 10 HOH HOH . E 5 HOH A 86 586 11 HOH HOH . E 5 HOH A 87 587 49 HOH HOH . E 5 HOH A 88 588 12 HOH HOH . E 5 HOH A 89 589 43 HOH HOH . E 5 HOH A 90 590 23 HOH HOH . E 5 HOH A 91 591 54 HOH HOH . E 5 HOH A 92 592 51 HOH HOH . E 5 HOH A 93 593 8 HOH HOH . E 5 HOH A 94 594 4 HOH HOH . E 5 HOH A 95 595 7 HOH HOH . E 5 HOH A 96 596 27 HOH HOH . E 5 HOH A 97 597 55 HOH HOH . E 5 HOH A 98 598 9 HOH HOH . E 5 HOH A 99 599 1 HOH HOH . E 5 HOH A 100 600 1 HOH HOH . E 5 HOH A 101 601 12 HOH HOH . E 5 HOH A 102 602 53 HOH HOH . E 5 HOH A 103 603 5 HOH HOH . E 5 HOH A 104 604 1 HOH HOH . E 5 HOH A 105 605 9 HOH HOH . E 5 HOH A 106 606 28 HOH HOH . E 5 HOH A 107 607 1 HOH HOH . E 5 HOH A 108 608 7 HOH HOH . E 5 HOH A 109 609 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -1.104 _atom_site.Cartn_y -29.206 _atom_site.Cartn_z 1.535 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 25.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #