data_5VXF # _model_server_result.job_id onS1OVNdd4VNJOwqNEQg-w _model_server_result.datetime_utc '2024-11-06 15:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5VXF # _exptl.entry_id 5VXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VXF _cell.length_a 82.244 _cell.length_b 85.861 _cell.length_c 102.961 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5VXF _atom_sites.fract_transf_matrix[1][1] 0.012159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 1 GOL GOL . D 2 GOL A 1 402 1 GOL GOL . E 2 GOL B 1 401 1 GOL GOL . F 2 GOL B 1 402 1 GOL GOL . G 3 HOH A 1 501 17 HOH HOH . G 3 HOH A 2 502 36 HOH HOH . G 3 HOH A 3 503 7 HOH HOH . G 3 HOH A 4 504 4 HOH HOH . G 3 HOH A 5 505 17 HOH HOH . G 3 HOH A 6 506 129 HOH HOH . G 3 HOH A 7 507 4 HOH HOH . G 3 HOH A 8 508 8 HOH HOH . G 3 HOH A 9 509 11 HOH HOH . G 3 HOH A 10 510 57 HOH HOH . G 3 HOH A 11 511 39 HOH HOH . G 3 HOH A 12 512 6 HOH HOH . G 3 HOH A 13 513 117 HOH HOH . G 3 HOH A 14 514 114 HOH HOH . G 3 HOH A 15 515 35 HOH HOH . G 3 HOH A 16 516 50 HOH HOH . G 3 HOH A 17 517 11 HOH HOH . G 3 HOH A 18 518 6 HOH HOH . G 3 HOH A 19 519 19 HOH HOH . G 3 HOH A 20 520 5 HOH HOH . G 3 HOH A 21 521 20 HOH HOH . G 3 HOH A 22 522 23 HOH HOH . G 3 HOH A 23 523 28 HOH HOH . G 3 HOH A 24 524 74 HOH HOH . G 3 HOH A 25 525 31 HOH HOH . G 3 HOH A 26 526 63 HOH HOH . G 3 HOH A 27 527 44 HOH HOH . G 3 HOH A 28 528 97 HOH HOH . G 3 HOH A 29 529 7 HOH HOH . G 3 HOH A 30 530 2 HOH HOH . G 3 HOH A 31 531 32 HOH HOH . G 3 HOH A 32 532 88 HOH HOH . G 3 HOH A 33 533 9 HOH HOH . G 3 HOH A 34 534 27 HOH HOH . G 3 HOH A 35 535 67 HOH HOH . G 3 HOH A 36 536 7 HOH HOH . G 3 HOH A 37 537 128 HOH HOH . G 3 HOH A 38 538 4 HOH HOH . G 3 HOH A 39 539 3 HOH HOH . G 3 HOH A 40 540 92 HOH HOH . G 3 HOH A 41 541 7 HOH HOH . G 3 HOH A 42 542 6 HOH HOH . G 3 HOH A 43 543 13 HOH HOH . G 3 HOH A 44 544 107 HOH HOH . G 3 HOH A 45 545 23 HOH HOH . G 3 HOH A 46 546 81 HOH HOH . G 3 HOH A 47 547 103 HOH HOH . G 3 HOH A 48 548 48 HOH HOH . G 3 HOH A 49 549 86 HOH HOH . G 3 HOH A 50 550 20 HOH HOH . G 3 HOH A 51 551 21 HOH HOH . G 3 HOH A 52 552 52 HOH HOH . G 3 HOH A 53 553 16 HOH HOH . G 3 HOH A 54 554 4 HOH HOH . G 3 HOH A 55 555 7 HOH HOH . G 3 HOH A 56 556 3 HOH HOH . G 3 HOH A 57 557 125 HOH HOH . G 3 HOH A 58 558 64 HOH HOH . G 3 HOH A 59 559 6 HOH HOH . G 3 HOH A 60 560 2 HOH HOH . G 3 HOH A 61 561 3 HOH HOH . G 3 HOH A 62 562 5 HOH HOH . G 3 HOH A 63 563 10 HOH HOH . G 3 HOH A 64 564 38 HOH HOH . G 3 HOH A 65 565 76 HOH HOH . G 3 HOH A 66 566 3 HOH HOH . G 3 HOH A 67 567 59 HOH HOH . G 3 HOH A 68 568 7 HOH HOH . G 3 HOH A 69 569 82 HOH HOH . G 3 HOH A 70 570 10 HOH HOH . G 3 HOH A 71 571 102 HOH HOH . G 3 HOH A 72 572 2 HOH HOH . G 3 HOH A 73 573 41 HOH HOH . G 3 HOH A 74 574 66 HOH HOH . G 3 HOH A 75 575 3 HOH HOH . G 3 HOH A 76 576 33 HOH HOH . G 3 HOH A 77 577 124 HOH HOH . G 3 HOH A 78 578 9 HOH HOH . G 3 HOH A 79 579 19 HOH HOH . G 3 HOH A 80 580 34 HOH HOH . G 3 HOH A 81 581 8 HOH HOH . G 3 HOH A 82 582 1 HOH HOH . G 3 HOH A 83 583 109 HOH HOH . G 3 HOH A 84 584 99 HOH HOH . G 3 HOH A 85 585 87 HOH HOH . G 3 HOH A 86 586 43 HOH HOH . G 3 HOH A 87 587 58 HOH HOH . G 3 HOH A 88 588 9 HOH HOH . G 3 HOH A 89 589 22 HOH HOH . G 3 HOH A 90 590 28 HOH HOH . G 3 HOH A 91 591 18 HOH HOH . G 3 HOH A 92 592 85 HOH HOH . G 3 HOH A 93 593 100 HOH HOH . G 3 HOH A 94 594 18 HOH HOH . G 3 HOH A 95 595 55 HOH HOH . G 3 HOH A 96 596 12 HOH HOH . G 3 HOH A 97 597 54 HOH HOH . G 3 HOH A 98 598 89 HOH HOH . G 3 HOH A 99 599 2 HOH HOH . G 3 HOH A 100 600 9 HOH HOH . G 3 HOH A 101 601 26 HOH HOH . G 3 HOH A 102 602 83 HOH HOH . G 3 HOH A 103 603 32 HOH HOH . G 3 HOH A 104 604 70 HOH HOH . G 3 HOH A 105 605 113 HOH HOH . G 3 HOH A 106 606 71 HOH HOH . G 3 HOH A 107 607 1 HOH HOH . G 3 HOH A 108 608 11 HOH HOH . G 3 HOH A 109 609 33 HOH HOH . G 3 HOH A 110 610 14 HOH HOH . G 3 HOH A 111 611 26 HOH HOH . G 3 HOH A 112 612 24 HOH HOH . G 3 HOH A 113 613 16 HOH HOH . G 3 HOH A 114 614 9 HOH HOH . G 3 HOH A 115 615 121 HOH HOH . G 3 HOH A 116 616 37 HOH HOH . G 3 HOH A 117 617 56 HOH HOH . G 3 HOH A 118 618 12 HOH HOH . G 3 HOH A 119 619 80 HOH HOH . G 3 HOH A 120 620 68 HOH HOH . G 3 HOH A 121 621 95 HOH HOH . G 3 HOH A 122 622 14 HOH HOH . G 3 HOH A 123 623 1 HOH HOH . G 3 HOH A 124 624 8 HOH HOH . G 3 HOH A 125 625 13 HOH HOH . G 3 HOH A 126 626 46 HOH HOH . G 3 HOH A 127 627 8 HOH HOH . G 3 HOH A 128 628 18 HOH HOH . G 3 HOH A 129 629 8 HOH HOH . G 3 HOH A 130 630 16 HOH HOH . G 3 HOH A 131 631 6 HOH HOH . G 3 HOH A 132 632 4 HOH HOH . H 3 HOH B 1 501 9 HOH HOH . H 3 HOH B 2 502 98 HOH HOH . H 3 HOH B 3 503 90 HOH HOH . H 3 HOH B 4 504 4 HOH HOH . H 3 HOH B 5 505 12 HOH HOH . H 3 HOH B 6 506 79 HOH HOH . H 3 HOH B 7 507 5 HOH HOH . H 3 HOH B 8 508 30 HOH HOH . H 3 HOH B 9 509 11 HOH HOH . H 3 HOH B 10 510 110 HOH HOH . H 3 HOH B 11 511 123 HOH HOH . H 3 HOH B 12 512 111 HOH HOH . H 3 HOH B 13 513 24 HOH HOH . H 3 HOH B 14 514 91 HOH HOH . H 3 HOH B 15 515 134 HOH HOH . H 3 HOH B 16 516 72 HOH HOH . H 3 HOH B 17 517 15 HOH HOH . H 3 HOH B 18 518 120 HOH HOH . H 3 HOH B 19 519 22 HOH HOH . H 3 HOH B 20 520 62 HOH HOH . H 3 HOH B 21 521 116 HOH HOH . H 3 HOH B 22 522 25 HOH HOH . H 3 HOH B 23 523 96 HOH HOH . H 3 HOH B 24 524 5 HOH HOH . H 3 HOH B 25 525 130 HOH HOH . H 3 HOH B 26 526 65 HOH HOH . H 3 HOH B 27 527 101 HOH HOH . H 3 HOH B 28 528 126 HOH HOH . H 3 HOH B 29 529 69 HOH HOH . H 3 HOH B 30 530 10 HOH HOH . H 3 HOH B 31 531 13 HOH HOH . H 3 HOH B 32 532 60 HOH HOH . H 3 HOH B 33 533 25 HOH HOH . H 3 HOH B 34 534 29 HOH HOH . H 3 HOH B 35 535 115 HOH HOH . H 3 HOH B 36 536 53 HOH HOH . H 3 HOH B 37 537 122 HOH HOH . H 3 HOH B 38 538 112 HOH HOH . H 3 HOH B 39 539 106 HOH HOH . H 3 HOH B 40 540 12 HOH HOH . H 3 HOH B 41 541 29 HOH HOH . H 3 HOH B 42 542 1 HOH HOH . H 3 HOH B 43 543 11 HOH HOH . H 3 HOH B 44 544 30 HOH HOH . H 3 HOH B 45 545 36 HOH HOH . H 3 HOH B 46 546 73 HOH HOH . H 3 HOH B 47 547 40 HOH HOH . H 3 HOH B 48 548 42 HOH HOH . H 3 HOH B 49 549 27 HOH HOH . H 3 HOH B 50 550 8 HOH HOH . H 3 HOH B 51 551 77 HOH HOH . H 3 HOH B 52 552 10 HOH HOH . H 3 HOH B 53 553 93 HOH HOH . H 3 HOH B 54 554 47 HOH HOH . H 3 HOH B 55 555 61 HOH HOH . H 3 HOH B 56 556 78 HOH HOH . H 3 HOH B 57 557 10 HOH HOH . H 3 HOH B 58 558 45 HOH HOH . H 3 HOH B 59 559 51 HOH HOH . H 3 HOH B 60 560 119 HOH HOH . H 3 HOH B 61 561 5 HOH HOH . H 3 HOH B 62 562 84 HOH HOH . H 3 HOH B 63 563 133 HOH HOH . H 3 HOH B 64 564 6 HOH HOH . H 3 HOH B 65 565 14 HOH HOH . H 3 HOH B 66 566 104 HOH HOH . H 3 HOH B 67 567 3 HOH HOH . H 3 HOH B 68 568 6 HOH HOH . H 3 HOH B 69 569 21 HOH HOH . H 3 HOH B 70 570 118 HOH HOH . H 3 HOH B 71 571 108 HOH HOH . H 3 HOH B 72 572 15 HOH HOH . H 3 HOH B 73 573 105 HOH HOH . H 3 HOH B 74 574 132 HOH HOH . H 3 HOH B 75 575 31 HOH HOH . H 3 HOH B 76 576 2 HOH HOH . H 3 HOH B 77 577 127 HOH HOH . H 3 HOH B 78 578 5 HOH HOH . H 3 HOH B 79 579 13 HOH HOH . H 3 HOH B 80 580 2 HOH HOH . H 3 HOH B 81 581 1 HOH HOH . H 3 HOH B 82 582 4 HOH HOH . H 3 HOH B 83 583 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -25.668 22.609 -20.617 1 34.85 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . E 2 -25.45 22.436 -21.989 1 36.65 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . E 2 -25.268 21.211 -20.175 1 42.82 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . E 2 -26.425 20.38 -20.04 1 32.72 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . E 2 -24.377 21.24 -18.979 1 48.12 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . E 2 -23.285 20.323 -19.119 1 39.11 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #