data_5VXH
#
_model_server_result.job_id            CLThUpGAK1BSdxIAsid4AQ 
_model_server_result.datetime_utc      '2024-11-24 18:00:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5VXH 
#
_exptl.entry_id    5VXH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VXH 
_cell.length_a            81.876 
_cell.length_b            85.409 
_cell.length_c            102.794 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5VXH 
_atom_sites.fract_transf_matrix[1][1]    0.012214 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011708 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009728 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 3 GOL GOL . 
D 2 GOL A 1 402 4 GOL GOL . 
E 2 GOL A 1 403 5 GOL GOL . 
F 3 PO4 A 1 404 2 PO4 PO4 . 
G 2 GOL B 1 401 2 GOL GOL . 
H 4 HOH A 1 501 134 HOH HOH . 
H 4 HOH A 2 502 196 HOH HOH . 
H 4 HOH A 3 503 212 HOH HOH . 
H 4 HOH A 4 504 200 HOH HOH . 
H 4 HOH A 5 505 214 HOH HOH . 
H 4 HOH A 6 506 240 HOH HOH . 
H 4 HOH A 7 507 45 HOH HOH . 
H 4 HOH A 8 508 171 HOH HOH . 
H 4 HOH A 9 509 254 HOH HOH . 
H 4 HOH A 10 510 256 HOH HOH . 
H 4 HOH A 11 511 116 HOH HOH . 
H 4 HOH A 12 512 7 HOH HOH . 
H 4 HOH A 13 513 178 HOH HOH . 
H 4 HOH A 14 514 293 HOH HOH . 
H 4 HOH A 15 515 146 HOH HOH . 
H 4 HOH A 16 516 75 HOH HOH . 
H 4 HOH A 17 517 112 HOH HOH . 
H 4 HOH A 18 518 283 HOH HOH . 
H 4 HOH A 19 519 62 HOH HOH . 
H 4 HOH A 20 520 80 HOH HOH . 
H 4 HOH A 21 521 149 HOH HOH . 
H 4 HOH A 22 522 198 HOH HOH . 
H 4 HOH A 23 523 28 HOH HOH . 
H 4 HOH A 24 524 274 HOH HOH . 
H 4 HOH A 25 525 188 HOH HOH . 
H 4 HOH A 26 526 221 HOH HOH . 
H 4 HOH A 27 527 12 HOH HOH . 
H 4 HOH A 28 528 192 HOH HOH . 
H 4 HOH A 29 529 123 HOH HOH . 
H 4 HOH A 30 530 161 HOH HOH . 
H 4 HOH A 31 531 13 HOH HOH . 
H 4 HOH A 32 532 97 HOH HOH . 
H 4 HOH A 33 533 33 HOH HOH . 
H 4 HOH A 34 534 127 HOH HOH . 
H 4 HOH A 35 535 143 HOH HOH . 
H 4 HOH A 36 536 145 HOH HOH . 
H 4 HOH A 37 537 20 HOH HOH . 
H 4 HOH A 38 538 255 HOH HOH . 
H 4 HOH A 39 539 295 HOH HOH . 
H 4 HOH A 40 540 36 HOH HOH . 
H 4 HOH A 41 541 108 HOH HOH . 
H 4 HOH A 42 542 5 HOH HOH . 
H 4 HOH A 43 543 278 HOH HOH . 
H 4 HOH A 44 544 67 HOH HOH . 
H 4 HOH A 45 545 35 HOH HOH . 
H 4 HOH A 46 546 177 HOH HOH . 
H 4 HOH A 47 547 68 HOH HOH . 
H 4 HOH A 48 548 280 HOH HOH . 
H 4 HOH A 49 549 73 HOH HOH . 
H 4 HOH A 50 550 34 HOH HOH . 
H 4 HOH A 51 551 170 HOH HOH . 
H 4 HOH A 52 552 207 HOH HOH . 
H 4 HOH A 53 553 69 HOH HOH . 
H 4 HOH A 54 554 91 HOH HOH . 
H 4 HOH A 55 555 88 HOH HOH . 
H 4 HOH A 56 556 151 HOH HOH . 
H 4 HOH A 57 557 282 HOH HOH . 
H 4 HOH A 58 558 194 HOH HOH . 
H 4 HOH A 59 559 4 HOH HOH . 
H 4 HOH A 60 560 98 HOH HOH . 
H 4 HOH A 61 561 42 HOH HOH . 
H 4 HOH A 62 562 132 HOH HOH . 
H 4 HOH A 63 563 39 HOH HOH . 
H 4 HOH A 64 564 124 HOH HOH . 
H 4 HOH A 65 565 85 HOH HOH . 
H 4 HOH A 66 566 27 HOH HOH . 
H 4 HOH A 67 567 172 HOH HOH . 
H 4 HOH A 68 568 53 HOH HOH . 
H 4 HOH A 69 569 8 HOH HOH . 
H 4 HOH A 70 570 11 HOH HOH . 
H 4 HOH A 71 571 21 HOH HOH . 
H 4 HOH A 72 572 208 HOH HOH . 
H 4 HOH A 73 573 3 HOH HOH . 
H 4 HOH A 74 574 211 HOH HOH . 
H 4 HOH A 75 575 201 HOH HOH . 
H 4 HOH A 76 576 197 HOH HOH . 
H 4 HOH A 77 577 52 HOH HOH . 
H 4 HOH A 78 578 173 HOH HOH . 
H 4 HOH A 79 579 159 HOH HOH . 
H 4 HOH A 80 580 9 HOH HOH . 
H 4 HOH A 81 581 155 HOH HOH . 
H 4 HOH A 82 582 71 HOH HOH . 
H 4 HOH A 83 583 83 HOH HOH . 
H 4 HOH A 84 584 169 HOH HOH . 
H 4 HOH A 85 585 81 HOH HOH . 
H 4 HOH A 86 586 167 HOH HOH . 
H 4 HOH A 87 587 102 HOH HOH . 
H 4 HOH A 88 588 135 HOH HOH . 
H 4 HOH A 89 589 120 HOH HOH . 
H 4 HOH A 90 590 31 HOH HOH . 
H 4 HOH A 91 591 184 HOH HOH . 
H 4 HOH A 92 592 48 HOH HOH . 
H 4 HOH A 93 593 66 HOH HOH . 
H 4 HOH A 94 594 160 HOH HOH . 
H 4 HOH A 95 595 163 HOH HOH . 
H 4 HOH A 96 596 23 HOH HOH . 
H 4 HOH A 97 597 100 HOH HOH . 
H 4 HOH A 98 598 37 HOH HOH . 
H 4 HOH A 99 599 103 HOH HOH . 
H 4 HOH A 100 600 89 HOH HOH . 
H 4 HOH A 101 601 93 HOH HOH . 
H 4 HOH A 102 602 46 HOH HOH . 
H 4 HOH A 103 603 144 HOH HOH . 
H 4 HOH A 104 604 153 HOH HOH . 
H 4 HOH A 105 605 18 HOH HOH . 
H 4 HOH A 106 606 166 HOH HOH . 
H 4 HOH A 107 607 156 HOH HOH . 
H 4 HOH A 108 608 40 HOH HOH . 
H 4 HOH A 109 609 250 HOH HOH . 
H 4 HOH A 110 610 6 HOH HOH . 
H 4 HOH A 111 611 162 HOH HOH . 
H 4 HOH A 112 612 275 HOH HOH . 
H 4 HOH A 113 613 111 HOH HOH . 
H 4 HOH A 114 614 176 HOH HOH . 
H 4 HOH A 115 615 86 HOH HOH . 
H 4 HOH A 116 616 165 HOH HOH . 
H 4 HOH A 117 617 191 HOH HOH . 
H 4 HOH A 118 618 15 HOH HOH . 
H 4 HOH A 119 619 140 HOH HOH . 
H 4 HOH A 120 620 290 HOH HOH . 
H 4 HOH A 121 621 87 HOH HOH . 
H 4 HOH A 122 622 294 HOH HOH . 
H 4 HOH A 123 623 186 HOH HOH . 
H 4 HOH A 124 624 38 HOH HOH . 
H 4 HOH A 125 625 110 HOH HOH . 
H 4 HOH A 126 626 54 HOH HOH . 
H 4 HOH A 127 627 131 HOH HOH . 
H 4 HOH A 128 628 182 HOH HOH . 
H 4 HOH A 129 629 154 HOH HOH . 
H 4 HOH A 130 630 215 HOH HOH . 
H 4 HOH A 131 631 276 HOH HOH . 
H 4 HOH A 132 632 180 HOH HOH . 
H 4 HOH A 133 633 289 HOH HOH . 
H 4 HOH A 134 634 213 HOH HOH . 
H 4 HOH A 135 635 273 HOH HOH . 
H 4 HOH A 136 636 168 HOH HOH . 
H 4 HOH A 137 637 288 HOH HOH . 
H 4 HOH A 138 638 209 HOH HOH . 
I 4 HOH B 1 501 210 HOH HOH . 
I 4 HOH B 2 502 158 HOH HOH . 
I 4 HOH B 3 503 76 HOH HOH . 
I 4 HOH B 4 504 96 HOH HOH . 
I 4 HOH B 5 505 118 HOH HOH . 
I 4 HOH B 6 506 150 HOH HOH . 
I 4 HOH B 7 507 59 HOH HOH . 
I 4 HOH B 8 508 148 HOH HOH . 
I 4 HOH B 9 509 41 HOH HOH . 
I 4 HOH B 10 510 129 HOH HOH . 
I 4 HOH B 11 511 206 HOH HOH . 
I 4 HOH B 12 512 175 HOH HOH . 
I 4 HOH B 13 513 252 HOH HOH . 
I 4 HOH B 14 514 90 HOH HOH . 
I 4 HOH B 15 515 189 HOH HOH . 
I 4 HOH B 16 516 115 HOH HOH . 
I 4 HOH B 17 517 287 HOH HOH . 
I 4 HOH B 18 518 141 HOH HOH . 
I 4 HOH B 19 519 50 HOH HOH . 
I 4 HOH B 20 520 203 HOH HOH . 
I 4 HOH B 21 521 121 HOH HOH . 
I 4 HOH B 22 522 94 HOH HOH . 
I 4 HOH B 23 523 22 HOH HOH . 
I 4 HOH B 24 524 292 HOH HOH . 
I 4 HOH B 25 525 109 HOH HOH . 
I 4 HOH B 26 526 47 HOH HOH . 
I 4 HOH B 27 527 77 HOH HOH . 
I 4 HOH B 28 528 95 HOH HOH . 
I 4 HOH B 29 529 281 HOH HOH . 
I 4 HOH B 30 530 26 HOH HOH . 
I 4 HOH B 31 531 147 HOH HOH . 
I 4 HOH B 32 532 30 HOH HOH . 
I 4 HOH B 33 533 61 HOH HOH . 
I 4 HOH B 34 534 64 HOH HOH . 
I 4 HOH B 35 535 164 HOH HOH . 
I 4 HOH B 36 536 126 HOH HOH . 
I 4 HOH B 37 537 58 HOH HOH . 
I 4 HOH B 38 538 130 HOH HOH . 
I 4 HOH B 39 539 29 HOH HOH . 
I 4 HOH B 40 540 133 HOH HOH . 
I 4 HOH B 41 541 251 HOH HOH . 
I 4 HOH B 42 542 78 HOH HOH . 
I 4 HOH B 43 543 128 HOH HOH . 
I 4 HOH B 44 544 65 HOH HOH . 
I 4 HOH B 45 545 101 HOH HOH . 
I 4 HOH B 46 546 119 HOH HOH . 
I 4 HOH B 47 547 125 HOH HOH . 
I 4 HOH B 48 548 17 HOH HOH . 
I 4 HOH B 49 549 14 HOH HOH . 
I 4 HOH B 50 550 92 HOH HOH . 
I 4 HOH B 51 551 55 HOH HOH . 
I 4 HOH B 52 552 57 HOH HOH . 
I 4 HOH B 53 553 185 HOH HOH . 
I 4 HOH B 54 554 84 HOH HOH . 
I 4 HOH B 55 555 106 HOH HOH . 
I 4 HOH B 56 556 44 HOH HOH . 
I 4 HOH B 57 557 63 HOH HOH . 
I 4 HOH B 58 558 82 HOH HOH . 
I 4 HOH B 59 559 72 HOH HOH . 
I 4 HOH B 60 560 222 HOH HOH . 
I 4 HOH B 61 561 79 HOH HOH . 
I 4 HOH B 62 562 43 HOH HOH . 
I 4 HOH B 63 563 179 HOH HOH . 
I 4 HOH B 64 564 117 HOH HOH . 
I 4 HOH B 65 565 174 HOH HOH . 
I 4 HOH B 66 566 25 HOH HOH . 
I 4 HOH B 67 567 286 HOH HOH . 
I 4 HOH B 68 568 10 HOH HOH . 
I 4 HOH B 69 569 60 HOH HOH . 
I 4 HOH B 70 570 199 HOH HOH . 
I 4 HOH B 71 571 24 HOH HOH . 
I 4 HOH B 72 572 152 HOH HOH . 
I 4 HOH B 73 573 105 HOH HOH . 
I 4 HOH B 74 574 107 HOH HOH . 
I 4 HOH B 75 575 113 HOH HOH . 
I 4 HOH B 76 576 190 HOH HOH . 
I 4 HOH B 77 577 114 HOH HOH . 
I 4 HOH B 78 578 19 HOH HOH . 
I 4 HOH B 79 579 193 HOH HOH . 
I 4 HOH B 80 580 253 HOH HOH . 
I 4 HOH B 81 581 291 HOH HOH . 
I 4 HOH B 82 582 257 HOH HOH . 
I 4 HOH B 83 583 183 HOH HOH . 
I 4 HOH B 84 584 277 HOH HOH . 
I 4 HOH B 85 585 56 HOH HOH . 
I 4 HOH B 86 586 284 HOH HOH . 
I 4 HOH B 87 587 104 HOH HOH . 
I 4 HOH B 88 588 187 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -22.371 22.12 -0.78 1 38.39 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . C 2 -22.55 23.372 -0.166 1 34.75 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . C 2 -21.275 21.503 0.016 1 39.37 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . C 2 -21.953 21.017 1.175 1 39.88 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . C 2 -20.651 20.446 -0.872 1 37.03 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . C 2 -19.933 19.584 -0.015 1 39.93 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#