data_5VXH # _model_server_result.job_id j1Gth_mvFk4BGYDworqIaw _model_server_result.datetime_utc '2024-11-28 11:07:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 5VXH # _exptl.entry_id 5VXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VXH _cell.length_a 81.876 _cell.length_b 85.409 _cell.length_c 102.794 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 273 n n P O2 PO4 sing 274 n n P O3 PO4 sing 275 n n P O4 PO4 sing 276 n n # _atom_sites.entry_id 5VXH _atom_sites.fract_transf_matrix[1][1] 0.012214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 3 GOL GOL . D 2 GOL A 1 402 4 GOL GOL . E 2 GOL A 1 403 5 GOL GOL . F 3 PO4 A 1 404 2 PO4 PO4 . G 2 GOL B 1 401 2 GOL GOL . H 4 HOH A 1 501 134 HOH HOH . H 4 HOH A 2 502 196 HOH HOH . H 4 HOH A 3 503 212 HOH HOH . H 4 HOH A 4 504 200 HOH HOH . H 4 HOH A 5 505 214 HOH HOH . H 4 HOH A 6 506 240 HOH HOH . H 4 HOH A 7 507 45 HOH HOH . H 4 HOH A 8 508 171 HOH HOH . H 4 HOH A 9 509 254 HOH HOH . H 4 HOH A 10 510 256 HOH HOH . H 4 HOH A 11 511 116 HOH HOH . H 4 HOH A 12 512 7 HOH HOH . H 4 HOH A 13 513 178 HOH HOH . H 4 HOH A 14 514 293 HOH HOH . H 4 HOH A 15 515 146 HOH HOH . H 4 HOH A 16 516 75 HOH HOH . H 4 HOH A 17 517 112 HOH HOH . H 4 HOH A 18 518 283 HOH HOH . H 4 HOH A 19 519 62 HOH HOH . H 4 HOH A 20 520 80 HOH HOH . H 4 HOH A 21 521 149 HOH HOH . H 4 HOH A 22 522 198 HOH HOH . H 4 HOH A 23 523 28 HOH HOH . H 4 HOH A 24 524 274 HOH HOH . H 4 HOH A 25 525 188 HOH HOH . H 4 HOH A 26 526 221 HOH HOH . H 4 HOH A 27 527 12 HOH HOH . H 4 HOH A 28 528 192 HOH HOH . H 4 HOH A 29 529 123 HOH HOH . H 4 HOH A 30 530 161 HOH HOH . H 4 HOH A 31 531 13 HOH HOH . H 4 HOH A 32 532 97 HOH HOH . H 4 HOH A 33 533 33 HOH HOH . H 4 HOH A 34 534 127 HOH HOH . H 4 HOH A 35 535 143 HOH HOH . H 4 HOH A 36 536 145 HOH HOH . H 4 HOH A 37 537 20 HOH HOH . H 4 HOH A 38 538 255 HOH HOH . H 4 HOH A 39 539 295 HOH HOH . H 4 HOH A 40 540 36 HOH HOH . H 4 HOH A 41 541 108 HOH HOH . H 4 HOH A 42 542 5 HOH HOH . H 4 HOH A 43 543 278 HOH HOH . H 4 HOH A 44 544 67 HOH HOH . H 4 HOH A 45 545 35 HOH HOH . H 4 HOH A 46 546 177 HOH HOH . H 4 HOH A 47 547 68 HOH HOH . H 4 HOH A 48 548 280 HOH HOH . H 4 HOH A 49 549 73 HOH HOH . H 4 HOH A 50 550 34 HOH HOH . H 4 HOH A 51 551 170 HOH HOH . H 4 HOH A 52 552 207 HOH HOH . H 4 HOH A 53 553 69 HOH HOH . H 4 HOH A 54 554 91 HOH HOH . H 4 HOH A 55 555 88 HOH HOH . H 4 HOH A 56 556 151 HOH HOH . H 4 HOH A 57 557 282 HOH HOH . H 4 HOH A 58 558 194 HOH HOH . H 4 HOH A 59 559 4 HOH HOH . H 4 HOH A 60 560 98 HOH HOH . H 4 HOH A 61 561 42 HOH HOH . H 4 HOH A 62 562 132 HOH HOH . H 4 HOH A 63 563 39 HOH HOH . H 4 HOH A 64 564 124 HOH HOH . H 4 HOH A 65 565 85 HOH HOH . H 4 HOH A 66 566 27 HOH HOH . H 4 HOH A 67 567 172 HOH HOH . H 4 HOH A 68 568 53 HOH HOH . H 4 HOH A 69 569 8 HOH HOH . H 4 HOH A 70 570 11 HOH HOH . H 4 HOH A 71 571 21 HOH HOH . H 4 HOH A 72 572 208 HOH HOH . H 4 HOH A 73 573 3 HOH HOH . H 4 HOH A 74 574 211 HOH HOH . H 4 HOH A 75 575 201 HOH HOH . H 4 HOH A 76 576 197 HOH HOH . H 4 HOH A 77 577 52 HOH HOH . H 4 HOH A 78 578 173 HOH HOH . H 4 HOH A 79 579 159 HOH HOH . H 4 HOH A 80 580 9 HOH HOH . H 4 HOH A 81 581 155 HOH HOH . H 4 HOH A 82 582 71 HOH HOH . H 4 HOH A 83 583 83 HOH HOH . H 4 HOH A 84 584 169 HOH HOH . H 4 HOH A 85 585 81 HOH HOH . H 4 HOH A 86 586 167 HOH HOH . H 4 HOH A 87 587 102 HOH HOH . H 4 HOH A 88 588 135 HOH HOH . H 4 HOH A 89 589 120 HOH HOH . H 4 HOH A 90 590 31 HOH HOH . H 4 HOH A 91 591 184 HOH HOH . H 4 HOH A 92 592 48 HOH HOH . H 4 HOH A 93 593 66 HOH HOH . H 4 HOH A 94 594 160 HOH HOH . H 4 HOH A 95 595 163 HOH HOH . H 4 HOH A 96 596 23 HOH HOH . H 4 HOH A 97 597 100 HOH HOH . H 4 HOH A 98 598 37 HOH HOH . H 4 HOH A 99 599 103 HOH HOH . H 4 HOH A 100 600 89 HOH HOH . H 4 HOH A 101 601 93 HOH HOH . H 4 HOH A 102 602 46 HOH HOH . H 4 HOH A 103 603 144 HOH HOH . H 4 HOH A 104 604 153 HOH HOH . H 4 HOH A 105 605 18 HOH HOH . H 4 HOH A 106 606 166 HOH HOH . H 4 HOH A 107 607 156 HOH HOH . H 4 HOH A 108 608 40 HOH HOH . H 4 HOH A 109 609 250 HOH HOH . H 4 HOH A 110 610 6 HOH HOH . H 4 HOH A 111 611 162 HOH HOH . H 4 HOH A 112 612 275 HOH HOH . H 4 HOH A 113 613 111 HOH HOH . H 4 HOH A 114 614 176 HOH HOH . H 4 HOH A 115 615 86 HOH HOH . H 4 HOH A 116 616 165 HOH HOH . H 4 HOH A 117 617 191 HOH HOH . H 4 HOH A 118 618 15 HOH HOH . H 4 HOH A 119 619 140 HOH HOH . H 4 HOH A 120 620 290 HOH HOH . H 4 HOH A 121 621 87 HOH HOH . H 4 HOH A 122 622 294 HOH HOH . H 4 HOH A 123 623 186 HOH HOH . H 4 HOH A 124 624 38 HOH HOH . H 4 HOH A 125 625 110 HOH HOH . H 4 HOH A 126 626 54 HOH HOH . H 4 HOH A 127 627 131 HOH HOH . H 4 HOH A 128 628 182 HOH HOH . H 4 HOH A 129 629 154 HOH HOH . H 4 HOH A 130 630 215 HOH HOH . H 4 HOH A 131 631 276 HOH HOH . H 4 HOH A 132 632 180 HOH HOH . H 4 HOH A 133 633 289 HOH HOH . H 4 HOH A 134 634 213 HOH HOH . H 4 HOH A 135 635 273 HOH HOH . H 4 HOH A 136 636 168 HOH HOH . H 4 HOH A 137 637 288 HOH HOH . H 4 HOH A 138 638 209 HOH HOH . I 4 HOH B 1 501 210 HOH HOH . I 4 HOH B 2 502 158 HOH HOH . I 4 HOH B 3 503 76 HOH HOH . I 4 HOH B 4 504 96 HOH HOH . I 4 HOH B 5 505 118 HOH HOH . I 4 HOH B 6 506 150 HOH HOH . I 4 HOH B 7 507 59 HOH HOH . I 4 HOH B 8 508 148 HOH HOH . I 4 HOH B 9 509 41 HOH HOH . I 4 HOH B 10 510 129 HOH HOH . I 4 HOH B 11 511 206 HOH HOH . I 4 HOH B 12 512 175 HOH HOH . I 4 HOH B 13 513 252 HOH HOH . I 4 HOH B 14 514 90 HOH HOH . I 4 HOH B 15 515 189 HOH HOH . I 4 HOH B 16 516 115 HOH HOH . I 4 HOH B 17 517 287 HOH HOH . I 4 HOH B 18 518 141 HOH HOH . I 4 HOH B 19 519 50 HOH HOH . I 4 HOH B 20 520 203 HOH HOH . I 4 HOH B 21 521 121 HOH HOH . I 4 HOH B 22 522 94 HOH HOH . I 4 HOH B 23 523 22 HOH HOH . I 4 HOH B 24 524 292 HOH HOH . I 4 HOH B 25 525 109 HOH HOH . I 4 HOH B 26 526 47 HOH HOH . I 4 HOH B 27 527 77 HOH HOH . I 4 HOH B 28 528 95 HOH HOH . I 4 HOH B 29 529 281 HOH HOH . I 4 HOH B 30 530 26 HOH HOH . I 4 HOH B 31 531 147 HOH HOH . I 4 HOH B 32 532 30 HOH HOH . I 4 HOH B 33 533 61 HOH HOH . I 4 HOH B 34 534 64 HOH HOH . I 4 HOH B 35 535 164 HOH HOH . I 4 HOH B 36 536 126 HOH HOH . I 4 HOH B 37 537 58 HOH HOH . I 4 HOH B 38 538 130 HOH HOH . I 4 HOH B 39 539 29 HOH HOH . I 4 HOH B 40 540 133 HOH HOH . I 4 HOH B 41 541 251 HOH HOH . I 4 HOH B 42 542 78 HOH HOH . I 4 HOH B 43 543 128 HOH HOH . I 4 HOH B 44 544 65 HOH HOH . I 4 HOH B 45 545 101 HOH HOH . I 4 HOH B 46 546 119 HOH HOH . I 4 HOH B 47 547 125 HOH HOH . I 4 HOH B 48 548 17 HOH HOH . I 4 HOH B 49 549 14 HOH HOH . I 4 HOH B 50 550 92 HOH HOH . I 4 HOH B 51 551 55 HOH HOH . I 4 HOH B 52 552 57 HOH HOH . I 4 HOH B 53 553 185 HOH HOH . I 4 HOH B 54 554 84 HOH HOH . I 4 HOH B 55 555 106 HOH HOH . I 4 HOH B 56 556 44 HOH HOH . I 4 HOH B 57 557 63 HOH HOH . I 4 HOH B 58 558 82 HOH HOH . I 4 HOH B 59 559 72 HOH HOH . I 4 HOH B 60 560 222 HOH HOH . I 4 HOH B 61 561 79 HOH HOH . I 4 HOH B 62 562 43 HOH HOH . I 4 HOH B 63 563 179 HOH HOH . I 4 HOH B 64 564 117 HOH HOH . I 4 HOH B 65 565 174 HOH HOH . I 4 HOH B 66 566 25 HOH HOH . I 4 HOH B 67 567 286 HOH HOH . I 4 HOH B 68 568 10 HOH HOH . I 4 HOH B 69 569 60 HOH HOH . I 4 HOH B 70 570 199 HOH HOH . I 4 HOH B 71 571 24 HOH HOH . I 4 HOH B 72 572 152 HOH HOH . I 4 HOH B 73 573 105 HOH HOH . I 4 HOH B 74 574 107 HOH HOH . I 4 HOH B 75 575 113 HOH HOH . I 4 HOH B 76 576 190 HOH HOH . I 4 HOH B 77 577 114 HOH HOH . I 4 HOH B 78 578 19 HOH HOH . I 4 HOH B 79 579 193 HOH HOH . I 4 HOH B 80 580 253 HOH HOH . I 4 HOH B 81 581 291 HOH HOH . I 4 HOH B 82 582 257 HOH HOH . I 4 HOH B 83 583 183 HOH HOH . I 4 HOH B 84 584 277 HOH HOH . I 4 HOH B 85 585 56 HOH HOH . I 4 HOH B 86 586 284 HOH HOH . I 4 HOH B 87 587 104 HOH HOH . I 4 HOH B 88 588 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 3 7.809 -8.192 -15.171 1 85.08 ? P PO4 404 A 1 HETATM 2 O O1 PO4 . . . F 3 6.811 -8.316 -16.319 1 74.69 ? O1 PO4 404 A 1 HETATM 3 O O2 PO4 . . . F 3 9.166 -7.838 -15.745 1 73.08 ? O2 PO4 404 A 1 HETATM 4 O O3 PO4 . . . F 3 8.014 -9.551 -14.535 1 61.62 ? O3 PO4 404 A 1 HETATM 5 O O4 PO4 . . . F 3 7.374 -7.123 -14.141 1 79.29 ? O4 PO4 404 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #