data_5VXI # _model_server_result.job_id mOa2bgj9V_17ZkPAwYsmgg _model_server_result.datetime_utc '2024-11-06 17:32:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5VXI # _exptl.entry_id 5VXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VXI _cell.length_a 89.765 _cell.length_b 89.765 _cell.length_c 69.509 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 23.169667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 38 A HIS 38 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OD1 ASP 76 A ASP 76 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 B MN MN . A MN 401 1_555 D O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 B MN MN . A MN 401 1_555 D O HOH . A HOH 506 2_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 B MN MN . A MN 401 1_555 D O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc6 B MN MN . A MN 401 1_555 D O HOH . A HOH 521 2_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VXI _atom_sites.fract_transf_matrix[1][1] 0.01114 _atom_sites.fract_transf_matrix[1][2] 0.006432 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 1 MN MN . C 3 CER A 1 402 1 CER CER . D 4 HOH A 1 501 25 HOH HOH . D 4 HOH A 2 502 14 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 42 HOH HOH . D 4 HOH A 5 505 17 HOH HOH . D 4 HOH A 6 506 44 HOH HOH . D 4 HOH A 7 507 35 HOH HOH . D 4 HOH A 8 508 22 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 37 HOH HOH . D 4 HOH A 11 511 46 HOH HOH . D 4 HOH A 12 512 34 HOH HOH . D 4 HOH A 13 513 38 HOH HOH . D 4 HOH A 14 514 15 HOH HOH . D 4 HOH A 15 515 8 HOH HOH . D 4 HOH A 16 516 24 HOH HOH . D 4 HOH A 17 517 33 HOH HOH . D 4 HOH A 18 518 27 HOH HOH . D 4 HOH A 19 519 19 HOH HOH . D 4 HOH A 20 520 13 HOH HOH . D 4 HOH A 21 521 43 HOH HOH . D 4 HOH A 22 522 32 HOH HOH . D 4 HOH A 23 523 21 HOH HOH . D 4 HOH A 24 524 16 HOH HOH . D 4 HOH A 25 525 6 HOH HOH . D 4 HOH A 26 526 28 HOH HOH . D 4 HOH A 27 527 11 HOH HOH . D 4 HOH A 28 528 30 HOH HOH . D 4 HOH A 29 529 39 HOH HOH . D 4 HOH A 30 530 20 HOH HOH . D 4 HOH A 31 531 10 HOH HOH . D 4 HOH A 32 532 4 HOH HOH . D 4 HOH A 33 533 5 HOH HOH . D 4 HOH A 34 534 40 HOH HOH . D 4 HOH A 35 535 31 HOH HOH . D 4 HOH A 36 536 7 HOH HOH . D 4 HOH A 37 537 1 HOH HOH . D 4 HOH A 38 538 12 HOH HOH . D 4 HOH A 39 539 41 HOH HOH . D 4 HOH A 40 540 29 HOH HOH . D 4 HOH A 41 541 23 HOH HOH . D 4 HOH A 42 542 26 HOH HOH . D 4 HOH A 43 543 18 HOH HOH . D 4 HOH A 44 544 45 HOH HOH . D 4 HOH A 45 545 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 65.182 _atom_site.Cartn_y 15.418 _atom_site.Cartn_z -10.078 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #