data_5VXZ # _model_server_result.job_id 70w8DrxxZoB_UYT811wFHQ _model_server_result.datetime_utc '2025-07-30 17:03:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":703}' # _entry.id 5VXZ # _exptl.entry_id 5VXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VXZ _cell.length_a 77.22 _cell.length_b 80.47 _cell.length_c 249.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,H,K,M 1 1 B,D,F,I,J,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 1678 NAG 3 n E NAG 2 E 2 NAG A 1679 NAG 3 n F NAG 1 F 1 NAG B 1678 NAG 3 n F NAG 2 F 2 NAG B 1679 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 283 1_555 A SG CYS 290 A CYS 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 164 A CYS 444 1_555 A SG CYS 190 A CYS 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf3 A SG CYS 363 A CYS 643 1_555 A SG CYS 390 A CYS 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? disulf ? disulf4 B SG CYS 3 B CYS 283 1_555 B SG CYS 290 B CYS 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf5 B SG CYS 164 B CYS 444 1_555 B SG CYS 190 B CYS 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf6 B SG CYS 363 B CYS 643 1_555 B SG CYS 390 B CYS 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? disulf ? disulf7 C SG CYS 23 C CYS 49 1_555 C SG CYS 84 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? disulf ? disulf8 D SG CYS 23 D CYS 49 1_555 D SG CYS 84 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? covale ? covale1 A ND2 ASN 140 A ASN 420 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 B ND2 ASN 140 B ASN 420 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale3 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 A OD1 ASP 49 A ASP 329 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc2 A OD2 ASP 49 A ASP 329 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc3 A O GLU 51 A GLU 331 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A O ARG 160 A ARG 440 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 A OD2 ASP 376 A ASP 656 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc6 G CA CA . A CA 703 1_555 K O HOH . A HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc7 G CA CA . A CA 703 1_555 K O HOH . A HOH 822 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc8 B OD1 ASP 49 B ASP 329 1_555 I CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc9 B OD2 ASP 49 B ASP 329 1_555 I CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc10 B O GLU 51 B GLU 331 1_555 I CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc11 B O ARG 160 B ARG 440 1_555 I CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc12 B OD2 ASP 376 B ASP 656 1_555 I CA CA . B CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc13 I CA CA . B CA 703 1_555 L O HOH . B HOH 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc14 I CA CA . B CA 703 1_555 L O HOH . B HOH 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VXZ _atom_sites.fract_transf_matrix[1][1] 0.01295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CA A 1 703 1 CA CA . H 5 CL A 1 704 1 CL CL . I 4 CA B 1 703 2 CA CA . J 5 CL B 1 704 2 CL CL . K 6 HOH A 1 801 68 HOH HOH . K 6 HOH A 2 802 43 HOH HOH . K 6 HOH A 3 803 155 HOH HOH . K 6 HOH A 4 804 40 HOH HOH . K 6 HOH A 5 805 184 HOH HOH . K 6 HOH A 6 806 153 HOH HOH . K 6 HOH A 7 807 82 HOH HOH . K 6 HOH A 8 808 52 HOH HOH . K 6 HOH A 9 809 89 HOH HOH . K 6 HOH A 10 810 95 HOH HOH . K 6 HOH A 11 811 57 HOH HOH . K 6 HOH A 12 812 15 HOH HOH . K 6 HOH A 13 813 131 HOH HOH . K 6 HOH A 14 814 109 HOH HOH . K 6 HOH A 15 815 78 HOH HOH . K 6 HOH A 16 816 58 HOH HOH . K 6 HOH A 17 817 92 HOH HOH . K 6 HOH A 18 818 140 HOH HOH . K 6 HOH A 19 819 160 HOH HOH . K 6 HOH A 20 820 142 HOH HOH . K 6 HOH A 21 821 189 HOH HOH . K 6 HOH A 22 822 31 HOH HOH . K 6 HOH A 23 823 108 HOH HOH . K 6 HOH A 24 824 135 HOH HOH . K 6 HOH A 25 825 157 HOH HOH . K 6 HOH A 26 826 130 HOH HOH . L 6 HOH B 1 801 44 HOH HOH . L 6 HOH B 2 802 117 HOH HOH . L 6 HOH B 3 803 175 HOH HOH . L 6 HOH B 4 804 177 HOH HOH . L 6 HOH B 5 805 129 HOH HOH . L 6 HOH B 6 806 101 HOH HOH . L 6 HOH B 7 807 61 HOH HOH . L 6 HOH B 8 808 128 HOH HOH . L 6 HOH B 9 809 84 HOH HOH . L 6 HOH B 10 810 162 HOH HOH . L 6 HOH B 11 811 148 HOH HOH . L 6 HOH B 12 812 7 HOH HOH . L 6 HOH B 13 813 163 HOH HOH . L 6 HOH B 14 814 10 HOH HOH . L 6 HOH B 15 815 81 HOH HOH . L 6 HOH B 16 816 33 HOH HOH . L 6 HOH B 17 817 73 HOH HOH . L 6 HOH B 18 818 99 HOH HOH . L 6 HOH B 19 819 23 HOH HOH . L 6 HOH B 20 820 91 HOH HOH . L 6 HOH B 21 821 62 HOH HOH . L 6 HOH B 22 822 102 HOH HOH . L 6 HOH B 23 823 90 HOH HOH . L 6 HOH B 24 824 75 HOH HOH . L 6 HOH B 25 825 53 HOH HOH . L 6 HOH B 26 826 158 HOH HOH . L 6 HOH B 27 827 87 HOH HOH . L 6 HOH B 28 828 2 HOH HOH . L 6 HOH B 29 829 37 HOH HOH . L 6 HOH B 30 830 168 HOH HOH . L 6 HOH B 31 831 100 HOH HOH . L 6 HOH B 32 832 38 HOH HOH . L 6 HOH B 33 833 105 HOH HOH . L 6 HOH B 34 834 176 HOH HOH . L 6 HOH B 35 835 83 HOH HOH . L 6 HOH B 36 836 70 HOH HOH . L 6 HOH B 37 837 94 HOH HOH . L 6 HOH B 38 838 181 HOH HOH . L 6 HOH B 39 839 11 HOH HOH . L 6 HOH B 40 840 26 HOH HOH . L 6 HOH B 41 841 110 HOH HOH . L 6 HOH B 42 842 56 HOH HOH . L 6 HOH B 43 843 3 HOH HOH . L 6 HOH B 44 844 116 HOH HOH . L 6 HOH B 45 845 118 HOH HOH . L 6 HOH B 46 846 28 HOH HOH . L 6 HOH B 47 847 34 HOH HOH . L 6 HOH B 48 848 35 HOH HOH . L 6 HOH B 49 849 22 HOH HOH . L 6 HOH B 50 850 126 HOH HOH . L 6 HOH B 51 851 6 HOH HOH . L 6 HOH B 52 852 67 HOH HOH . L 6 HOH B 53 853 30 HOH HOH . L 6 HOH B 54 854 36 HOH HOH . L 6 HOH B 55 855 60 HOH HOH . L 6 HOH B 56 856 72 HOH HOH . L 6 HOH B 57 857 14 HOH HOH . L 6 HOH B 58 858 115 HOH HOH . L 6 HOH B 59 859 32 HOH HOH . L 6 HOH B 60 860 133 HOH HOH . L 6 HOH B 61 861 156 HOH HOH . L 6 HOH B 62 862 178 HOH HOH . L 6 HOH B 63 863 20 HOH HOH . L 6 HOH B 64 864 134 HOH HOH . L 6 HOH B 65 865 9 HOH HOH . L 6 HOH B 66 866 167 HOH HOH . L 6 HOH B 67 867 114 HOH HOH . L 6 HOH B 68 868 50 HOH HOH . L 6 HOH B 69 869 79 HOH HOH . L 6 HOH B 70 870 93 HOH HOH . L 6 HOH B 71 871 103 HOH HOH . L 6 HOH B 72 872 71 HOH HOH . L 6 HOH B 73 873 47 HOH HOH . L 6 HOH B 74 874 88 HOH HOH . L 6 HOH B 75 875 152 HOH HOH . L 6 HOH B 76 876 86 HOH HOH . L 6 HOH B 77 877 39 HOH HOH . L 6 HOH B 78 878 185 HOH HOH . L 6 HOH B 79 879 1 HOH HOH . L 6 HOH B 80 880 146 HOH HOH . L 6 HOH B 81 881 54 HOH HOH . L 6 HOH B 82 882 8 HOH HOH . L 6 HOH B 83 883 151 HOH HOH . L 6 HOH B 84 884 112 HOH HOH . L 6 HOH B 85 885 132 HOH HOH . L 6 HOH B 86 886 113 HOH HOH . L 6 HOH B 87 887 51 HOH HOH . L 6 HOH B 88 888 55 HOH HOH . L 6 HOH B 89 889 138 HOH HOH . L 6 HOH B 90 890 69 HOH HOH . L 6 HOH B 91 891 123 HOH HOH . L 6 HOH B 92 892 16 HOH HOH . L 6 HOH B 93 893 187 HOH HOH . L 6 HOH B 94 894 136 HOH HOH . L 6 HOH B 95 895 188 HOH HOH . L 6 HOH B 96 896 63 HOH HOH . L 6 HOH B 97 897 59 HOH HOH . L 6 HOH B 98 898 172 HOH HOH . L 6 HOH B 99 899 66 HOH HOH . L 6 HOH B 100 900 147 HOH HOH . L 6 HOH B 101 901 97 HOH HOH . L 6 HOH B 102 902 98 HOH HOH . L 6 HOH B 103 903 107 HOH HOH . L 6 HOH B 104 904 80 HOH HOH . L 6 HOH B 105 905 180 HOH HOH . L 6 HOH B 106 906 164 HOH HOH . L 6 HOH B 107 907 182 HOH HOH . L 6 HOH B 108 908 144 HOH HOH . L 6 HOH B 109 909 111 HOH HOH . L 6 HOH B 110 910 48 HOH HOH . L 6 HOH B 111 911 64 HOH HOH . L 6 HOH B 112 912 17 HOH HOH . L 6 HOH B 113 913 169 HOH HOH . L 6 HOH B 114 914 174 HOH HOH . L 6 HOH B 115 915 49 HOH HOH . L 6 HOH B 116 916 127 HOH HOH . L 6 HOH B 117 917 173 HOH HOH . L 6 HOH B 118 918 13 HOH HOH . L 6 HOH B 119 919 122 HOH HOH . L 6 HOH B 120 920 119 HOH HOH . L 6 HOH B 121 921 18 HOH HOH . L 6 HOH B 122 922 145 HOH HOH . L 6 HOH B 123 923 150 HOH HOH . L 6 HOH B 124 924 166 HOH HOH . L 6 HOH B 125 925 137 HOH HOH . L 6 HOH B 126 926 143 HOH HOH . L 6 HOH B 127 927 27 HOH HOH . L 6 HOH B 128 928 165 HOH HOH . L 6 HOH B 129 929 179 HOH HOH . L 6 HOH B 130 930 154 HOH HOH . L 6 HOH B 131 931 19 HOH HOH . L 6 HOH B 132 932 149 HOH HOH . L 6 HOH B 133 933 120 HOH HOH . L 6 HOH B 134 934 159 HOH HOH . L 6 HOH B 135 935 124 HOH HOH . M 6 HOH C 1 201 186 HOH HOH . M 6 HOH C 2 202 74 HOH HOH . M 6 HOH C 3 203 85 HOH HOH . M 6 HOH C 4 204 29 HOH HOH . M 6 HOH C 5 205 45 HOH HOH . M 6 HOH C 6 206 41 HOH HOH . M 6 HOH C 7 207 12 HOH HOH . M 6 HOH C 8 208 170 HOH HOH . M 6 HOH C 9 209 77 HOH HOH . M 6 HOH C 10 210 183 HOH HOH . M 6 HOH C 11 211 96 HOH HOH . N 6 HOH D 1 201 4 HOH HOH . N 6 HOH D 2 202 24 HOH HOH . N 6 HOH D 3 203 121 HOH HOH . N 6 HOH D 4 204 125 HOH HOH . N 6 HOH D 5 205 161 HOH HOH . N 6 HOH D 6 206 171 HOH HOH . N 6 HOH D 7 207 141 HOH HOH . N 6 HOH D 8 208 139 HOH HOH . N 6 HOH D 9 209 104 HOH HOH . N 6 HOH D 10 210 25 HOH HOH . N 6 HOH D 11 211 65 HOH HOH . N 6 HOH D 12 212 21 HOH HOH . N 6 HOH D 13 213 46 HOH HOH . N 6 HOH D 14 214 106 HOH HOH . N 6 HOH D 15 215 42 HOH HOH . N 6 HOH D 16 216 76 HOH HOH . N 6 HOH D 17 217 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 20.372 _atom_site.Cartn_y 1.969 _atom_site.Cartn_z 56.062 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 703 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #