data_5VY2 # _model_server_result.job_id 9INamQKDyu-Mm-7dbqX8MA _model_server_result.datetime_utc '2024-12-25 20:28:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vy2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5VY2 # _exptl.entry_id 5VY2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.59 _cell.angle_gamma 90 _cell.entry_id 5VY2 _cell.length_a 57.202 _cell.length_b 49.589 _cell.length_c 64.284 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 132 A ASP 132 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc2 C NA NA . A NA 201 1_555 D O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VY2 _atom_sites.fract_transf_matrix[1][1] 0.017482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 201 1 NA NA . D 3 HOH A 1 301 16 HOH HOH . D 3 HOH A 2 302 13 HOH HOH . D 3 HOH A 3 303 42 HOH HOH . D 3 HOH A 4 304 156 HOH HOH . D 3 HOH A 5 305 133 HOH HOH . D 3 HOH A 6 306 59 HOH HOH . D 3 HOH A 7 307 6 HOH HOH . D 3 HOH A 8 308 17 HOH HOH . D 3 HOH A 9 309 82 HOH HOH . D 3 HOH A 10 310 139 HOH HOH . D 3 HOH A 11 311 115 HOH HOH . D 3 HOH A 12 312 41 HOH HOH . D 3 HOH A 13 313 96 HOH HOH . D 3 HOH A 14 314 38 HOH HOH . D 3 HOH A 15 315 99 HOH HOH . D 3 HOH A 16 316 143 HOH HOH . D 3 HOH A 17 317 126 HOH HOH . D 3 HOH A 18 318 129 HOH HOH . D 3 HOH A 19 319 91 HOH HOH . D 3 HOH A 20 320 141 HOH HOH . D 3 HOH A 21 321 98 HOH HOH . D 3 HOH A 22 322 71 HOH HOH . D 3 HOH A 23 323 128 HOH HOH . D 3 HOH A 24 324 86 HOH HOH . D 3 HOH A 25 325 63 HOH HOH . D 3 HOH A 26 326 62 HOH HOH . D 3 HOH A 27 327 58 HOH HOH . D 3 HOH A 28 328 121 HOH HOH . D 3 HOH A 29 329 127 HOH HOH . D 3 HOH A 30 330 57 HOH HOH . D 3 HOH A 31 331 18 HOH HOH . D 3 HOH A 32 332 138 HOH HOH . D 3 HOH A 33 333 5 HOH HOH . D 3 HOH A 34 334 172 HOH HOH . D 3 HOH A 35 335 93 HOH HOH . D 3 HOH A 36 336 2 HOH HOH . D 3 HOH A 37 337 69 HOH HOH . D 3 HOH A 38 338 79 HOH HOH . D 3 HOH A 39 339 155 HOH HOH . D 3 HOH A 40 340 49 HOH HOH . D 3 HOH A 41 341 14 HOH HOH . D 3 HOH A 42 342 80 HOH HOH . D 3 HOH A 43 343 66 HOH HOH . D 3 HOH A 44 344 87 HOH HOH . D 3 HOH A 45 345 122 HOH HOH . D 3 HOH A 46 346 60 HOH HOH . D 3 HOH A 47 347 70 HOH HOH . D 3 HOH A 48 348 103 HOH HOH . D 3 HOH A 49 349 67 HOH HOH . D 3 HOH A 50 350 1 HOH HOH . D 3 HOH A 51 351 48 HOH HOH . D 3 HOH A 52 352 53 HOH HOH . D 3 HOH A 53 353 4 HOH HOH . D 3 HOH A 54 354 132 HOH HOH . D 3 HOH A 55 355 174 HOH HOH . D 3 HOH A 56 356 68 HOH HOH . D 3 HOH A 57 357 77 HOH HOH . D 3 HOH A 58 358 47 HOH HOH . D 3 HOH A 59 359 100 HOH HOH . D 3 HOH A 60 360 97 HOH HOH . D 3 HOH A 61 361 40 HOH HOH . D 3 HOH A 62 362 104 HOH HOH . D 3 HOH A 63 363 167 HOH HOH . D 3 HOH A 64 364 54 HOH HOH . D 3 HOH A 65 365 109 HOH HOH . D 3 HOH A 66 366 142 HOH HOH . D 3 HOH A 67 367 175 HOH HOH . D 3 HOH A 68 368 3 HOH HOH . D 3 HOH A 69 369 27 HOH HOH . D 3 HOH A 70 370 15 HOH HOH . D 3 HOH A 71 371 72 HOH HOH . D 3 HOH A 72 372 81 HOH HOH . D 3 HOH A 73 373 130 HOH HOH . D 3 HOH A 74 374 150 HOH HOH . D 3 HOH A 75 375 85 HOH HOH . D 3 HOH A 76 376 23 HOH HOH . D 3 HOH A 77 377 65 HOH HOH . D 3 HOH A 78 378 94 HOH HOH . D 3 HOH A 79 379 74 HOH HOH . D 3 HOH A 80 380 157 HOH HOH . D 3 HOH A 81 381 84 HOH HOH . D 3 HOH A 82 382 102 HOH HOH . D 3 HOH A 83 383 160 HOH HOH . D 3 HOH A 84 384 114 HOH HOH . D 3 HOH A 85 385 123 HOH HOH . D 3 HOH A 86 386 162 HOH HOH . D 3 HOH A 87 387 61 HOH HOH . D 3 HOH A 88 388 137 HOH HOH . D 3 HOH A 89 389 131 HOH HOH . D 3 HOH A 90 390 111 HOH HOH . D 3 HOH A 91 391 163 HOH HOH . D 3 HOH A 92 392 108 HOH HOH . D 3 HOH A 93 393 105 HOH HOH . D 3 HOH A 94 394 112 HOH HOH . D 3 HOH A 95 395 164 HOH HOH . D 3 HOH A 96 396 90 HOH HOH . D 3 HOH A 97 397 168 HOH HOH . D 3 HOH A 98 398 147 HOH HOH . D 3 HOH A 99 399 107 HOH HOH . D 3 HOH A 100 400 136 HOH HOH . D 3 HOH A 101 401 166 HOH HOH . D 3 HOH A 102 402 170 HOH HOH . D 3 HOH A 103 403 43 HOH HOH . D 3 HOH A 104 404 110 HOH HOH . D 3 HOH A 105 405 89 HOH HOH . D 3 HOH A 106 406 113 HOH HOH . E 3 HOH B 1 201 173 HOH HOH . E 3 HOH B 2 202 20 HOH HOH . E 3 HOH B 3 203 11 HOH HOH . E 3 HOH B 4 204 45 HOH HOH . E 3 HOH B 5 205 34 HOH HOH . E 3 HOH B 6 206 12 HOH HOH . E 3 HOH B 7 207 19 HOH HOH . E 3 HOH B 8 208 92 HOH HOH . E 3 HOH B 9 209 117 HOH HOH . E 3 HOH B 10 210 30 HOH HOH . E 3 HOH B 11 211 26 HOH HOH . E 3 HOH B 12 212 159 HOH HOH . E 3 HOH B 13 213 7 HOH HOH . E 3 HOH B 14 214 78 HOH HOH . E 3 HOH B 15 215 8 HOH HOH . E 3 HOH B 16 216 64 HOH HOH . E 3 HOH B 17 217 35 HOH HOH . E 3 HOH B 18 218 125 HOH HOH . E 3 HOH B 19 219 146 HOH HOH . E 3 HOH B 20 220 52 HOH HOH . E 3 HOH B 21 221 153 HOH HOH . E 3 HOH B 22 222 124 HOH HOH . E 3 HOH B 23 223 151 HOH HOH . E 3 HOH B 24 224 55 HOH HOH . E 3 HOH B 25 225 25 HOH HOH . E 3 HOH B 26 226 31 HOH HOH . E 3 HOH B 27 227 21 HOH HOH . E 3 HOH B 28 228 118 HOH HOH . E 3 HOH B 29 229 24 HOH HOH . E 3 HOH B 30 230 39 HOH HOH . E 3 HOH B 31 231 36 HOH HOH . E 3 HOH B 32 232 56 HOH HOH . E 3 HOH B 33 233 29 HOH HOH . E 3 HOH B 34 234 76 HOH HOH . E 3 HOH B 35 235 50 HOH HOH . E 3 HOH B 36 236 28 HOH HOH . E 3 HOH B 37 237 37 HOH HOH . E 3 HOH B 38 238 9 HOH HOH . E 3 HOH B 39 239 158 HOH HOH . E 3 HOH B 40 240 134 HOH HOH . E 3 HOH B 41 241 116 HOH HOH . E 3 HOH B 42 242 176 HOH HOH . E 3 HOH B 43 243 73 HOH HOH . E 3 HOH B 44 244 51 HOH HOH . E 3 HOH B 45 245 140 HOH HOH . E 3 HOH B 46 246 46 HOH HOH . E 3 HOH B 47 247 171 HOH HOH . E 3 HOH B 48 248 10 HOH HOH . E 3 HOH B 49 249 22 HOH HOH . E 3 HOH B 50 250 44 HOH HOH . E 3 HOH B 51 251 32 HOH HOH . E 3 HOH B 52 252 83 HOH HOH . E 3 HOH B 53 253 152 HOH HOH . E 3 HOH B 54 254 88 HOH HOH . E 3 HOH B 55 255 101 HOH HOH . E 3 HOH B 56 256 120 HOH HOH . E 3 HOH B 57 257 154 HOH HOH . E 3 HOH B 58 258 149 HOH HOH . E 3 HOH B 59 259 119 HOH HOH . E 3 HOH B 60 260 145 HOH HOH . E 3 HOH B 61 261 106 HOH HOH . E 3 HOH B 62 262 95 HOH HOH . E 3 HOH B 63 263 33 HOH HOH . E 3 HOH B 64 264 75 HOH HOH . E 3 HOH B 65 265 161 HOH HOH . E 3 HOH B 66 266 169 HOH HOH . E 3 HOH B 67 267 165 HOH HOH . E 3 HOH B 68 268 135 HOH HOH . E 3 HOH B 69 269 148 HOH HOH . E 3 HOH B 70 270 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 33.063 _atom_site.Cartn_y 36.171 _atom_site.Cartn_z 40.748 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #