data_5VYF
#
_model_server_result.job_id            1GwxTip6OPc4iDzuNOq6pg 
_model_server_result.datetime_utc      '2024-11-09 02:42:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    5VYF 
#
_exptl.entry_id    5VYF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VYF 
_cell.length_a            74.985 
_cell.length_b            131.48 
_cell.length_c            148.357 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,I,J,K 1 1 
D,E,F,H,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf4 B SG CYS 142 H CYS 142 1_555 B SG CYS 198 H CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf5 C SG CYS 7 F CYS 7 1_555 C SG CYS 162 F CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 C SG CYS 48 F CYS 48 1_555 C SG CYS 136 F CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
disulf ? disulf7 C SG CYS 73 F CYS 73 1_555 C SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 D SG CYS 23 A CYS 23 1_555 D SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf9 D SG CYS 134 A CYS 134 1_555 D SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf10 E SG CYS 22 B CYS 22 1_555 E SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf11 E SG CYS 142 B CYS 142 1_555 E SG CYS 198 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf12 F SG CYS 7 C CYS 7 1_555 F SG CYS 162 C CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf13 F SG CYS 48 C CYS 48 1_555 F SG CYS 136 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf14 F SG CYS 73 C CYS 73 1_555 F SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 C OD1 ASP 60 F ASP 60 1_555 G CA CA . F CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? 
metalc ? metalc2 F OD1 ASP 60 C ASP 60 1_555 H CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? 
metalc ? metalc3 F OH TYR 113 C TYR 113 1_555 H CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VYF 
_atom_sites.fract_transf_matrix[1][1]    0.013336 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007606 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 CA F 1 201 2 CA CA . 
H 4 CA C 1 201 1 CA CA . 
I 5 HOH L 1 301 74 HOH HOH . 
I 5 HOH L 2 302 128 HOH HOH . 
I 5 HOH L 3 303 117 HOH HOH . 
I 5 HOH L 4 304 17 HOH HOH . 
I 5 HOH L 5 305 22 HOH HOH . 
I 5 HOH L 6 306 125 HOH HOH . 
I 5 HOH L 7 307 1 HOH HOH . 
I 5 HOH L 8 308 41 HOH HOH . 
I 5 HOH L 9 309 19 HOH HOH . 
I 5 HOH L 10 310 59 HOH HOH . 
I 5 HOH L 11 311 32 HOH HOH . 
I 5 HOH L 12 312 109 HOH HOH . 
I 5 HOH L 13 313 13 HOH HOH . 
I 5 HOH L 14 314 51 HOH HOH . 
I 5 HOH L 15 315 34 HOH HOH . 
I 5 HOH L 16 316 12 HOH HOH . 
I 5 HOH L 17 317 100 HOH HOH . 
I 5 HOH L 18 318 42 HOH HOH . 
I 5 HOH L 19 319 23 HOH HOH . 
I 5 HOH L 20 320 50 HOH HOH . 
I 5 HOH L 21 321 82 HOH HOH . 
I 5 HOH L 22 322 53 HOH HOH . 
I 5 HOH L 23 323 113 HOH HOH . 
I 5 HOH L 24 324 79 HOH HOH . 
I 5 HOH L 25 325 107 HOH HOH . 
I 5 HOH L 26 326 73 HOH HOH . 
I 5 HOH L 27 327 8 HOH HOH . 
I 5 HOH L 28 328 126 HOH HOH . 
I 5 HOH L 29 329 123 HOH HOH . 
I 5 HOH L 30 330 105 HOH HOH . 
J 5 HOH H 1 301 52 HOH HOH . 
J 5 HOH H 2 302 115 HOH HOH . 
J 5 HOH H 3 303 60 HOH HOH . 
J 5 HOH H 4 304 49 HOH HOH . 
J 5 HOH H 5 305 120 HOH HOH . 
J 5 HOH H 6 306 7 HOH HOH . 
J 5 HOH H 7 307 6 HOH HOH . 
J 5 HOH H 8 308 76 HOH HOH . 
J 5 HOH H 9 309 11 HOH HOH . 
J 5 HOH H 10 310 121 HOH HOH . 
J 5 HOH H 11 311 92 HOH HOH . 
J 5 HOH H 12 312 68 HOH HOH . 
J 5 HOH H 13 313 108 HOH HOH . 
J 5 HOH H 14 314 132 HOH HOH . 
K 5 HOH F 1 301 64 HOH HOH . 
K 5 HOH F 2 302 46 HOH HOH . 
K 5 HOH F 3 303 87 HOH HOH . 
K 5 HOH F 4 304 133 HOH HOH . 
K 5 HOH F 5 305 88 HOH HOH . 
K 5 HOH F 6 306 35 HOH HOH . 
K 5 HOH F 7 307 20 HOH HOH . 
K 5 HOH F 8 308 29 HOH HOH . 
K 5 HOH F 9 309 38 HOH HOH . 
K 5 HOH F 10 310 80 HOH HOH . 
K 5 HOH F 11 311 21 HOH HOH . 
K 5 HOH F 12 312 47 HOH HOH . 
K 5 HOH F 13 313 27 HOH HOH . 
L 5 HOH A 1 301 134 HOH HOH . 
L 5 HOH A 2 302 28 HOH HOH . 
L 5 HOH A 3 303 30 HOH HOH . 
L 5 HOH A 4 304 3 HOH HOH . 
L 5 HOH A 5 305 103 HOH HOH . 
L 5 HOH A 6 306 71 HOH HOH . 
L 5 HOH A 7 307 67 HOH HOH . 
L 5 HOH A 8 308 25 HOH HOH . 
L 5 HOH A 9 309 84 HOH HOH . 
L 5 HOH A 10 310 18 HOH HOH . 
L 5 HOH A 11 311 106 HOH HOH . 
L 5 HOH A 12 312 57 HOH HOH . 
L 5 HOH A 13 313 95 HOH HOH . 
L 5 HOH A 14 314 131 HOH HOH . 
L 5 HOH A 15 315 91 HOH HOH . 
L 5 HOH A 16 316 44 HOH HOH . 
L 5 HOH A 17 317 94 HOH HOH . 
L 5 HOH A 18 318 130 HOH HOH . 
L 5 HOH A 19 319 69 HOH HOH . 
L 5 HOH A 20 320 37 HOH HOH . 
L 5 HOH A 21 321 90 HOH HOH . 
L 5 HOH A 22 322 104 HOH HOH . 
M 5 HOH B 1 301 72 HOH HOH . 
M 5 HOH B 2 302 78 HOH HOH . 
M 5 HOH B 3 303 5 HOH HOH . 
M 5 HOH B 4 304 99 HOH HOH . 
M 5 HOH B 5 305 114 HOH HOH . 
M 5 HOH B 6 306 9 HOH HOH . 
M 5 HOH B 7 307 112 HOH HOH . 
M 5 HOH B 8 308 111 HOH HOH . 
M 5 HOH B 9 309 119 HOH HOH . 
M 5 HOH B 10 310 75 HOH HOH . 
M 5 HOH B 11 311 61 HOH HOH . 
M 5 HOH B 12 312 77 HOH HOH . 
M 5 HOH B 13 313 43 HOH HOH . 
M 5 HOH B 14 314 26 HOH HOH . 
M 5 HOH B 15 315 93 HOH HOH . 
M 5 HOH B 16 316 129 HOH HOH . 
M 5 HOH B 17 317 98 HOH HOH . 
N 5 HOH C 1 301 110 HOH HOH . 
N 5 HOH C 2 302 96 HOH HOH . 
N 5 HOH C 3 303 4 HOH HOH . 
N 5 HOH C 4 304 116 HOH HOH . 
N 5 HOH C 5 305 101 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -17.111 
_atom_site.Cartn_y               35.729 
_atom_site.Cartn_z               61.949 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.52 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#