data_5VYU
#
_model_server_result.job_id            39NB9B9qmwPpvHI-nsAt3Q 
_model_server_result.datetime_utc      '2024-11-25 08:23:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    5VYU 
#
_exptl.entry_id    5VYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              473.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-{4-[{[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}(formyl)amino]benzoyl}-L-glutamic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VYU 
_cell.length_a            66.835 
_cell.length_b            66.835 
_cell.length_c            235.947 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C20 H23 N7 O7' 
_chem_comp.formula_weight    473.439 
_chem_comp.id                1YA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-{4-[{[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}(formyl)amino]benzoyl}-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 N8 1YA sing 1 n n 
C7 C6 1YA sing 2 n n 
N8 C8A 1YA sing 3 n n 
O5 C18 1YA doub 4 n n 
C6 N5 1YA sing 5 n n 
C6 C9 1YA sing 6 n n 
C18 N10 1YA sing 7 n n 
C15 C16 1YA doub 8 n y 
C15 C14 1YA sing 9 n y 
C16 C11 1YA sing 10 n y 
N10 C14 1YA sing 11 n n 
N10 C9 1YA sing 12 n n 
N5 C4A 1YA sing 13 n n 
C8A C4A 1YA doub 14 n n 
C8A N1 1YA sing 15 n n 
C14 C13 1YA doub 16 n y 
C4A C4 1YA sing 17 n n 
N1 C2 1YA doub 18 n n 
C11 C17 1YA sing 19 n n 
C11 C12 1YA doub 20 n y 
C13 C12 1YA sing 21 n y 
C2 N3 1YA sing 22 n n 
C2 NA2 1YA sing 23 n n 
C4 N3 1YA sing 24 n n 
C4 O4 1YA doub 25 n n 
O C17 1YA doub 26 n n 
C17 N 1YA sing 27 n n 
N CA 1YA sing 28 n n 
CA CT 1YA sing 29 n n 
CA CB 1YA sing 30 n n 
CT O2 1YA doub 31 n n 
CT O1 1YA sing 32 n n 
CG CB 1YA sing 33 n n 
CG CD 1YA sing 34 n n 
OE2 CD 1YA doub 35 n n 
CD OE1 1YA sing 36 n n 
NA2 H1 1YA sing 37 n n 
NA2 H2 1YA sing 38 n n 
N3 H3 1YA sing 39 n n 
N5 H5 1YA sing 40 n n 
C6 H7 1YA sing 41 n n 
C7 H8 1YA sing 42 n n 
C7 H9 1YA sing 43 n n 
C9 H10 1YA sing 44 n n 
C9 H11 1YA sing 45 n n 
C12 H12 1YA sing 46 n n 
C13 H13 1YA sing 47 n n 
C15 H14 1YA sing 48 n n 
C16 H15 1YA sing 49 n n 
N H16 1YA sing 50 n n 
CA H17 1YA sing 51 n n 
CB H18 1YA sing 52 n n 
CB H19 1YA sing 53 n n 
CG H20 1YA sing 54 n n 
CG H21 1YA sing 55 n n 
OE1 H22 1YA sing 56 n n 
O1 H23 1YA sing 57 n n 
C18 H24 1YA sing 58 n n 
N8 H4 1YA sing 59 n n 
#
_atom_sites.entry_id                     5VYU 
_atom_sites.fract_transf_matrix[1][1]    0.014962 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014962 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004238 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1YA A 1 301 300 1YA 1YA . 
D 3 JB2 A 1 302 2002 JB2 JB2 . 
E 2 1YA B 1 301 300 1YA 1YA . 
F 4 GDP B 1 302 1 GDP GDP . 
G 5 HOH A 1 401 187 HOH HOH . 
G 5 HOH A 2 402 44 HOH HOH . 
G 5 HOH A 3 403 28 HOH HOH . 
G 5 HOH A 4 404 198 HOH HOH . 
G 5 HOH A 5 405 213 HOH HOH . 
G 5 HOH A 6 406 237 HOH HOH . 
G 5 HOH A 7 407 221 HOH HOH . 
G 5 HOH A 8 408 177 HOH HOH . 
G 5 HOH A 9 409 96 HOH HOH . 
G 5 HOH A 10 410 191 HOH HOH . 
G 5 HOH A 11 411 74 HOH HOH . 
G 5 HOH A 12 412 210 HOH HOH . 
G 5 HOH A 13 413 216 HOH HOH . 
G 5 HOH A 14 414 37 HOH HOH . 
G 5 HOH A 15 415 203 HOH HOH . 
G 5 HOH A 16 416 222 HOH HOH . 
G 5 HOH A 17 417 78 HOH HOH . 
G 5 HOH A 18 418 50 HOH HOH . 
G 5 HOH A 19 419 29 HOH HOH . 
G 5 HOH A 20 420 223 HOH HOH . 
G 5 HOH A 21 421 10 HOH HOH . 
G 5 HOH A 22 422 188 HOH HOH . 
G 5 HOH A 23 423 184 HOH HOH . 
G 5 HOH A 24 424 55 HOH HOH . 
G 5 HOH A 25 425 104 HOH HOH . 
G 5 HOH A 26 426 174 HOH HOH . 
G 5 HOH A 27 427 105 HOH HOH . 
G 5 HOH A 28 428 3 HOH HOH . 
G 5 HOH A 29 429 41 HOH HOH . 
G 5 HOH A 30 430 86 HOH HOH . 
G 5 HOH A 31 431 114 HOH HOH . 
G 5 HOH A 32 432 90 HOH HOH . 
G 5 HOH A 33 433 139 HOH HOH . 
G 5 HOH A 34 434 93 HOH HOH . 
G 5 HOH A 35 435 196 HOH HOH . 
G 5 HOH A 36 436 110 HOH HOH . 
G 5 HOH A 37 437 18 HOH HOH . 
G 5 HOH A 38 438 66 HOH HOH . 
G 5 HOH A 39 439 45 HOH HOH . 
G 5 HOH A 40 440 21 HOH HOH . 
G 5 HOH A 41 441 98 HOH HOH . 
G 5 HOH A 42 442 186 HOH HOH . 
G 5 HOH A 43 443 8 HOH HOH . 
G 5 HOH A 44 444 131 HOH HOH . 
G 5 HOH A 45 445 181 HOH HOH . 
G 5 HOH A 46 446 211 HOH HOH . 
G 5 HOH A 47 447 64 HOH HOH . 
G 5 HOH A 48 448 4 HOH HOH . 
G 5 HOH A 49 449 42 HOH HOH . 
G 5 HOH A 50 450 103 HOH HOH . 
G 5 HOH A 51 451 53 HOH HOH . 
G 5 HOH A 52 452 75 HOH HOH . 
G 5 HOH A 53 453 199 HOH HOH . 
G 5 HOH A 54 454 65 HOH HOH . 
G 5 HOH A 55 455 243 HOH HOH . 
G 5 HOH A 56 456 14 HOH HOH . 
G 5 HOH A 57 457 244 HOH HOH . 
G 5 HOH A 58 458 80 HOH HOH . 
G 5 HOH A 59 459 207 HOH HOH . 
G 5 HOH A 60 460 52 HOH HOH . 
G 5 HOH A 61 461 5 HOH HOH . 
G 5 HOH A 62 462 239 HOH HOH . 
G 5 HOH A 63 463 220 HOH HOH . 
G 5 HOH A 64 464 51 HOH HOH . 
G 5 HOH A 65 465 94 HOH HOH . 
G 5 HOH A 66 466 142 HOH HOH . 
G 5 HOH A 67 467 152 HOH HOH . 
G 5 HOH A 68 468 85 HOH HOH . 
G 5 HOH A 69 469 122 HOH HOH . 
G 5 HOH A 70 470 70 HOH HOH . 
G 5 HOH A 71 471 208 HOH HOH . 
G 5 HOH A 72 472 11 HOH HOH . 
G 5 HOH A 73 473 48 HOH HOH . 
G 5 HOH A 74 474 151 HOH HOH . 
G 5 HOH A 75 475 1 HOH HOH . 
G 5 HOH A 76 476 26 HOH HOH . 
G 5 HOH A 77 477 62 HOH HOH . 
G 5 HOH A 78 478 240 HOH HOH . 
G 5 HOH A 79 479 39 HOH HOH . 
G 5 HOH A 80 480 100 HOH HOH . 
G 5 HOH A 81 481 46 HOH HOH . 
G 5 HOH A 82 482 192 HOH HOH . 
G 5 HOH A 83 483 54 HOH HOH . 
G 5 HOH A 84 484 47 HOH HOH . 
G 5 HOH A 85 485 215 HOH HOH . 
G 5 HOH A 86 486 16 HOH HOH . 
G 5 HOH A 87 487 189 HOH HOH . 
G 5 HOH A 88 488 212 HOH HOH . 
G 5 HOH A 89 489 200 HOH HOH . 
G 5 HOH A 90 490 190 HOH HOH . 
G 5 HOH A 91 491 115 HOH HOH . 
G 5 HOH A 92 492 204 HOH HOH . 
G 5 HOH A 93 493 102 HOH HOH . 
G 5 HOH A 94 494 238 HOH HOH . 
G 5 HOH A 95 495 32 HOH HOH . 
G 5 HOH A 96 496 81 HOH HOH . 
G 5 HOH A 97 497 218 HOH HOH . 
G 5 HOH A 98 498 209 HOH HOH . 
H 5 HOH B 1 401 72 HOH HOH . 
H 5 HOH B 2 402 241 HOH HOH . 
H 5 HOH B 3 403 6 HOH HOH . 
H 5 HOH B 4 404 227 HOH HOH . 
H 5 HOH B 5 405 206 HOH HOH . 
H 5 HOH B 6 406 91 HOH HOH . 
H 5 HOH B 7 407 173 HOH HOH . 
H 5 HOH B 8 408 20 HOH HOH . 
H 5 HOH B 9 409 224 HOH HOH . 
H 5 HOH B 10 410 193 HOH HOH . 
H 5 HOH B 11 411 225 HOH HOH . 
H 5 HOH B 12 412 234 HOH HOH . 
H 5 HOH B 13 413 95 HOH HOH . 
H 5 HOH B 14 414 87 HOH HOH . 
H 5 HOH B 15 415 180 HOH HOH . 
H 5 HOH B 16 416 106 HOH HOH . 
H 5 HOH B 17 417 7 HOH HOH . 
H 5 HOH B 18 418 73 HOH HOH . 
H 5 HOH B 19 419 145 HOH HOH . 
H 5 HOH B 20 420 230 HOH HOH . 
H 5 HOH B 21 421 201 HOH HOH . 
H 5 HOH B 22 422 116 HOH HOH . 
H 5 HOH B 23 423 141 HOH HOH . 
H 5 HOH B 24 424 22 HOH HOH . 
H 5 HOH B 25 425 31 HOH HOH . 
H 5 HOH B 26 426 58 HOH HOH . 
H 5 HOH B 27 427 182 HOH HOH . 
H 5 HOH B 28 428 33 HOH HOH . 
H 5 HOH B 29 429 219 HOH HOH . 
H 5 HOH B 30 430 92 HOH HOH . 
H 5 HOH B 31 431 228 HOH HOH . 
H 5 HOH B 32 432 236 HOH HOH . 
H 5 HOH B 33 433 63 HOH HOH . 
H 5 HOH B 34 434 76 HOH HOH . 
H 5 HOH B 35 435 43 HOH HOH . 
H 5 HOH B 36 436 59 HOH HOH . 
H 5 HOH B 37 437 146 HOH HOH . 
H 5 HOH B 38 438 242 HOH HOH . 
H 5 HOH B 39 439 194 HOH HOH . 
H 5 HOH B 40 440 71 HOH HOH . 
H 5 HOH B 41 441 13 HOH HOH . 
H 5 HOH B 42 442 178 HOH HOH . 
H 5 HOH B 43 443 24 HOH HOH . 
H 5 HOH B 44 444 17 HOH HOH . 
H 5 HOH B 45 445 23 HOH HOH . 
H 5 HOH B 46 446 107 HOH HOH . 
H 5 HOH B 47 447 148 HOH HOH . 
H 5 HOH B 48 448 57 HOH HOH . 
H 5 HOH B 49 449 144 HOH HOH . 
H 5 HOH B 50 450 119 HOH HOH . 
H 5 HOH B 51 451 157 HOH HOH . 
H 5 HOH B 52 452 9 HOH HOH . 
H 5 HOH B 53 453 67 HOH HOH . 
H 5 HOH B 54 454 233 HOH HOH . 
H 5 HOH B 55 455 185 HOH HOH . 
H 5 HOH B 56 456 205 HOH HOH . 
H 5 HOH B 57 457 12 HOH HOH . 
H 5 HOH B 58 458 126 HOH HOH . 
H 5 HOH B 59 459 77 HOH HOH . 
H 5 HOH B 60 460 113 HOH HOH . 
H 5 HOH B 61 461 202 HOH HOH . 
H 5 HOH B 62 462 34 HOH HOH . 
H 5 HOH B 63 463 169 HOH HOH . 
H 5 HOH B 64 464 25 HOH HOH . 
H 5 HOH B 65 465 56 HOH HOH . 
H 5 HOH B 66 466 19 HOH HOH . 
H 5 HOH B 67 467 89 HOH HOH . 
H 5 HOH B 68 468 183 HOH HOH . 
H 5 HOH B 69 469 179 HOH HOH . 
H 5 HOH B 70 470 226 HOH HOH . 
H 5 HOH B 71 471 30 HOH HOH . 
H 5 HOH B 72 472 83 HOH HOH . 
H 5 HOH B 73 473 68 HOH HOH . 
H 5 HOH B 74 474 101 HOH HOH . 
H 5 HOH B 75 475 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 1YA . . . E 2 -1.42 48.11 42.08 1 18.32 ? N1 1YA 301 B 1 
HETATM 2 C C2 1YA . . . E 2 -0.586 48.708 42.954 1 18.32 ? C2 1YA 301 B 1 
HETATM 3 N NA2 1YA . . . E 2 -0.973 48.951 44.193 1 17.79 ? NA2 1YA 301 B 1 
HETATM 4 N N3 1YA . . . E 2 0.682 49.076 42.594 1 17.6 ? N3 1YA 301 B 1 
HETATM 5 C C4 1YA . . . E 2 1.167 48.868 41.33 1 17.57 ? C4 1YA 301 B 1 
HETATM 6 O O4 1YA . . . E 2 2.307 49.201 41.038 1 18.32 ? O4 1YA 301 B 1 
HETATM 7 C C4A 1YA . . . E 2 0.27 48.236 40.385 1 17.81 ? C4A 1YA 301 B 1 
HETATM 8 N N5 1YA . . . E 2 0.672 47.977 39.084 1 18.03 ? N5 1YA 301 B 1 
HETATM 9 C C6 1YA . . . E 2 -0.389 47.884 38.068 1 18.42 ? C6 1YA 301 B 1 
HETATM 10 C C7 1YA . . . E 2 -1.49 46.945 38.571 1 17.74 ? C7 1YA 301 B 1 
HETATM 11 N N8 1YA . . . E 2 -1.886 47.302 39.931 1 18.46 ? N8 1YA 301 B 1 
HETATM 12 C C8A 1YA . . . E 2 -1.021 47.884 40.817 1 18.06 ? C8A 1YA 301 B 1 
HETATM 13 C C9 1YA . . . E 2 -0.852 49.322 37.725 1 19.28 ? C9 1YA 301 B 1 
HETATM 14 N N10 1YA . . . E 2 -1.981 49.499 36.719 1 21.59 ? N10 1YA 301 B 1 
HETATM 15 C C11 1YA . . . E 2 -5.291 51.931 37.91 1 27.37 ? C11 1YA 301 B 1 
HETATM 16 C C12 1YA . . . E 2 -4.011 52.23 38.359 1 24.74 ? C12 1YA 301 B 1 
HETATM 17 C C13 1YA . . . E 2 -2.927 51.45 37.977 1 23.43 ? C13 1YA 301 B 1 
HETATM 18 C C14 1YA . . . E 2 -3.1 50.308 37.159 1 22.75 ? C14 1YA 301 B 1 
HETATM 19 C C15 1YA . . . E 2 -4.391 50.04 36.693 1 26.11 ? C15 1YA 301 B 1 
HETATM 20 C C16 1YA . . . E 2 -5.472 50.833 37.074 1 27.6 ? C16 1YA 301 B 1 
HETATM 21 C C17 1YA . . . E 2 -6.531 52.732 38.259 1 31.03 ? C17 1YA 301 B 1 
HETATM 22 N N 1YA . . . E 2 -6.462 53.53 39.318 1 30.35 ? N 1YA 301 B 1 
HETATM 23 C C18 1YA . . . E 2 -1.833 49.02 35.455 1 23.59 ? C18 1YA 301 B 1 
HETATM 24 O O5 1YA . . . E 2 -0.917 48.282 35.028 1 24.7 ? O5 1YA 301 B 1 
HETATM 25 O O 1YA . . . E 2 -7.561 52.639 37.576 1 36.26 ? O 1YA 301 B 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#