data_5VZQ # _model_server_result.job_id 793Lqe508r21tFEDAYC8Ug _model_server_result.datetime_utc '2024-11-25 15:50:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5VZQ # _exptl.entry_id 5VZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.74 _cell.angle_gamma 90 _cell.entry_id 5VZQ _cell.length_a 34.816 _cell.length_b 29.321 _cell.length_c 63.923 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 D N NO . A NO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 5VZQ _atom_sites.fract_transf_matrix[1][1] 0.028722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008097 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 NO A 1 203 82 NO NO . E 5 NO2 A 1 204 5657 NO2 NO2 . F 6 HOH A 1 301 70 HOH HOH . F 6 HOH A 2 302 75 HOH HOH . F 6 HOH A 3 303 34 HOH HOH . F 6 HOH A 4 304 99 HOH HOH . F 6 HOH A 5 305 3 HOH HOH . F 6 HOH A 6 306 63 HOH HOH . F 6 HOH A 7 307 107 HOH HOH . F 6 HOH A 8 308 78 HOH HOH . F 6 HOH A 9 309 8 HOH HOH . F 6 HOH A 10 310 77 HOH HOH . F 6 HOH A 11 311 37 HOH HOH . F 6 HOH A 12 312 32 HOH HOH . F 6 HOH A 13 313 98 HOH HOH . F 6 HOH A 14 314 29 HOH HOH . F 6 HOH A 15 315 26 HOH HOH . F 6 HOH A 16 316 11 HOH HOH . F 6 HOH A 17 317 102 HOH HOH . F 6 HOH A 18 318 56 HOH HOH . F 6 HOH A 19 319 45 HOH HOH . F 6 HOH A 20 320 88 HOH HOH . F 6 HOH A 21 321 87 HOH HOH . F 6 HOH A 22 322 80 HOH HOH . F 6 HOH A 23 323 67 HOH HOH . F 6 HOH A 24 324 48 HOH HOH . F 6 HOH A 25 325 12 HOH HOH . F 6 HOH A 26 326 71 HOH HOH . F 6 HOH A 27 327 31 HOH HOH . F 6 HOH A 28 328 66 HOH HOH . F 6 HOH A 29 329 19 HOH HOH . F 6 HOH A 30 330 23 HOH HOH . F 6 HOH A 31 331 14 HOH HOH . F 6 HOH A 32 332 39 HOH HOH . F 6 HOH A 33 333 79 HOH HOH . F 6 HOH A 34 334 68 HOH HOH . F 6 HOH A 35 335 49 HOH HOH . F 6 HOH A 36 336 61 HOH HOH . F 6 HOH A 37 337 103 HOH HOH . F 6 HOH A 38 338 16 HOH HOH . F 6 HOH A 39 339 52 HOH HOH . F 6 HOH A 40 340 17 HOH HOH . F 6 HOH A 41 341 44 HOH HOH . F 6 HOH A 42 342 59 HOH HOH . F 6 HOH A 43 343 9 HOH HOH . F 6 HOH A 44 344 55 HOH HOH . F 6 HOH A 45 345 5 HOH HOH . F 6 HOH A 46 346 42 HOH HOH . F 6 HOH A 47 347 64 HOH HOH . F 6 HOH A 48 348 22 HOH HOH . F 6 HOH A 49 349 21 HOH HOH . F 6 HOH A 50 350 91 HOH HOH . F 6 HOH A 51 351 4 HOH HOH . F 6 HOH A 52 352 60 HOH HOH . F 6 HOH A 53 353 106 HOH HOH . F 6 HOH A 54 354 46 HOH HOH . F 6 HOH A 55 355 89 HOH HOH . F 6 HOH A 56 356 54 HOH HOH . F 6 HOH A 57 357 33 HOH HOH . F 6 HOH A 58 358 15 HOH HOH . F 6 HOH A 59 359 38 HOH HOH . F 6 HOH A 60 360 81 HOH HOH . F 6 HOH A 61 361 50 HOH HOH . F 6 HOH A 62 362 1 HOH HOH . F 6 HOH A 63 363 24 HOH HOH . F 6 HOH A 64 364 18 HOH HOH . F 6 HOH A 65 365 62 HOH HOH . F 6 HOH A 66 366 85 HOH HOH . F 6 HOH A 67 367 73 HOH HOH . F 6 HOH A 68 368 43 HOH HOH . F 6 HOH A 69 369 27 HOH HOH . F 6 HOH A 70 370 41 HOH HOH . F 6 HOH A 71 371 94 HOH HOH . F 6 HOH A 72 372 35 HOH HOH . F 6 HOH A 73 373 104 HOH HOH . F 6 HOH A 74 374 90 HOH HOH . F 6 HOH A 75 375 10 HOH HOH . F 6 HOH A 76 376 108 HOH HOH . F 6 HOH A 77 377 58 HOH HOH . F 6 HOH A 78 378 72 HOH HOH . F 6 HOH A 79 379 6 HOH HOH . F 6 HOH A 80 380 105 HOH HOH . F 6 HOH A 81 381 95 HOH HOH . F 6 HOH A 82 382 53 HOH HOH . F 6 HOH A 83 383 96 HOH HOH . F 6 HOH A 84 384 25 HOH HOH . F 6 HOH A 85 385 76 HOH HOH . F 6 HOH A 86 386 83 HOH HOH . F 6 HOH A 87 387 84 HOH HOH . F 6 HOH A 88 388 97 HOH HOH . F 6 HOH A 89 389 86 HOH HOH . F 6 HOH A 90 390 74 HOH HOH . F 6 HOH A 91 391 93 HOH HOH . F 6 HOH A 92 392 69 HOH HOH . F 6 HOH A 93 393 47 HOH HOH . F 6 HOH A 94 394 109 HOH HOH . F 6 HOH A 95 395 100 HOH HOH . F 6 HOH A 96 396 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 0.816 5.157 -16.769 1 9.75 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 4.321 1.948 -15.579 1 10.48 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 0.96 -1.11 -14.095 1 11.4 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 -2.515 1.937 -15.421 1 10.57 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 2.045 4.549 -16.552 1 10.48 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 3.317 5.178 -16.828 1 10.39 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 4.315 4.288 -16.559 1 10.41 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 3.676 3.107 -16.032 1 10.29 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 5.827 4.541 -16.688 1 10.06 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 3.404 6.59 -17.38 1 11.12 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 3.866 7.405 -16.18 1 11.91 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 2.952 7.473 -14.958 1 13.1 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 1.819 7.93 -15.12 1 12.84 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 3.4 7.164 -13.803 1 15.53 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 3.695 0.832 -15.087 1 11.9 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 4.396 -0.365 -14.634 1 13.44 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 3.468 -1.215 -14.177 1 13.94 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 2.18 -0.541 -14.406 1 12.9 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 5.918 -0.631 -14.595 1 13.58 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 3.585 -2.6 -13.625 1 17.85 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 4.648 -3.415 -13.579 1 20.35 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 -0.297 -0.608 -14.321 1 10.79 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 -1.514 -1.281 -14.148 1 10.88 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 -2.527 -0.401 -14.573 1 10.67 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 -1.875 0.829 -14.937 1 10.41 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 -1.658 -2.674 -13.669 1 10.9 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 -3.998 -0.556 -14.682 1 11.76 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 -4.68 -1.669 -14.516 1 12.56 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 -1.862 3.062 -15.912 1 10.33 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 -2.616 4.204 -16.419 1 10.43 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 -1.669 5.09 -16.819 1 10.16 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 -0.364 4.482 -16.488 1 9.6 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 -4.112 4.369 -16.524 1 10.34 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 -1.89 6.409 -17.48 1 10.2 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 -1.868 6.177 -19.018 1 11.84 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 -2.315 7.381 -19.838 1 12.17 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 -3.479 7.833 -19.855 1 11.39 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 -1.48 7.929 -20.599 1 12.08 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 2.296 3.285 -16.061 1 10 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 2.376 0.653 -14.925 1 11.41 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 -0.551 0.637 -14.797 1 10.76 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 -0.506 3.238 -15.929 1 9.65 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 0.876 1.982 -15.427 1 11.55 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 43 #