data_5VZQ # _model_server_result.job_id 4bb9nI7mQgAAX-KuYlB2HA _model_server_result.datetime_utc '2024-11-25 15:51:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5VZQ # _exptl.entry_id 5VZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 30.006 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRIC OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.74 _cell.angle_gamma 90 _cell.entry_id 5VZQ _cell.length_a 34.816 _cell.length_b 29.321 _cell.length_c 63.923 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 D N NO . A NO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? # _chem_comp.formula 'N O' _chem_comp.formula_weight 30.006 _chem_comp.id NO _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRIC OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nitrogen monoxide' # _chem_comp_bond.atom_id_1 N _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id NO _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 306 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 5VZQ _atom_sites.fract_transf_matrix[1][1] 0.028722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008097 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 NO A 1 203 82 NO NO . E 5 NO2 A 1 204 5657 NO2 NO2 . F 6 HOH A 1 301 70 HOH HOH . F 6 HOH A 2 302 75 HOH HOH . F 6 HOH A 3 303 34 HOH HOH . F 6 HOH A 4 304 99 HOH HOH . F 6 HOH A 5 305 3 HOH HOH . F 6 HOH A 6 306 63 HOH HOH . F 6 HOH A 7 307 107 HOH HOH . F 6 HOH A 8 308 78 HOH HOH . F 6 HOH A 9 309 8 HOH HOH . F 6 HOH A 10 310 77 HOH HOH . F 6 HOH A 11 311 37 HOH HOH . F 6 HOH A 12 312 32 HOH HOH . F 6 HOH A 13 313 98 HOH HOH . F 6 HOH A 14 314 29 HOH HOH . F 6 HOH A 15 315 26 HOH HOH . F 6 HOH A 16 316 11 HOH HOH . F 6 HOH A 17 317 102 HOH HOH . F 6 HOH A 18 318 56 HOH HOH . F 6 HOH A 19 319 45 HOH HOH . F 6 HOH A 20 320 88 HOH HOH . F 6 HOH A 21 321 87 HOH HOH . F 6 HOH A 22 322 80 HOH HOH . F 6 HOH A 23 323 67 HOH HOH . F 6 HOH A 24 324 48 HOH HOH . F 6 HOH A 25 325 12 HOH HOH . F 6 HOH A 26 326 71 HOH HOH . F 6 HOH A 27 327 31 HOH HOH . F 6 HOH A 28 328 66 HOH HOH . F 6 HOH A 29 329 19 HOH HOH . F 6 HOH A 30 330 23 HOH HOH . F 6 HOH A 31 331 14 HOH HOH . F 6 HOH A 32 332 39 HOH HOH . F 6 HOH A 33 333 79 HOH HOH . F 6 HOH A 34 334 68 HOH HOH . F 6 HOH A 35 335 49 HOH HOH . F 6 HOH A 36 336 61 HOH HOH . F 6 HOH A 37 337 103 HOH HOH . F 6 HOH A 38 338 16 HOH HOH . F 6 HOH A 39 339 52 HOH HOH . F 6 HOH A 40 340 17 HOH HOH . F 6 HOH A 41 341 44 HOH HOH . F 6 HOH A 42 342 59 HOH HOH . F 6 HOH A 43 343 9 HOH HOH . F 6 HOH A 44 344 55 HOH HOH . F 6 HOH A 45 345 5 HOH HOH . F 6 HOH A 46 346 42 HOH HOH . F 6 HOH A 47 347 64 HOH HOH . F 6 HOH A 48 348 22 HOH HOH . F 6 HOH A 49 349 21 HOH HOH . F 6 HOH A 50 350 91 HOH HOH . F 6 HOH A 51 351 4 HOH HOH . F 6 HOH A 52 352 60 HOH HOH . F 6 HOH A 53 353 106 HOH HOH . F 6 HOH A 54 354 46 HOH HOH . F 6 HOH A 55 355 89 HOH HOH . F 6 HOH A 56 356 54 HOH HOH . F 6 HOH A 57 357 33 HOH HOH . F 6 HOH A 58 358 15 HOH HOH . F 6 HOH A 59 359 38 HOH HOH . F 6 HOH A 60 360 81 HOH HOH . F 6 HOH A 61 361 50 HOH HOH . F 6 HOH A 62 362 1 HOH HOH . F 6 HOH A 63 363 24 HOH HOH . F 6 HOH A 64 364 18 HOH HOH . F 6 HOH A 65 365 62 HOH HOH . F 6 HOH A 66 366 85 HOH HOH . F 6 HOH A 67 367 73 HOH HOH . F 6 HOH A 68 368 43 HOH HOH . F 6 HOH A 69 369 27 HOH HOH . F 6 HOH A 70 370 41 HOH HOH . F 6 HOH A 71 371 94 HOH HOH . F 6 HOH A 72 372 35 HOH HOH . F 6 HOH A 73 373 104 HOH HOH . F 6 HOH A 74 374 90 HOH HOH . F 6 HOH A 75 375 10 HOH HOH . F 6 HOH A 76 376 108 HOH HOH . F 6 HOH A 77 377 58 HOH HOH . F 6 HOH A 78 378 72 HOH HOH . F 6 HOH A 79 379 6 HOH HOH . F 6 HOH A 80 380 105 HOH HOH . F 6 HOH A 81 381 95 HOH HOH . F 6 HOH A 82 382 53 HOH HOH . F 6 HOH A 83 383 96 HOH HOH . F 6 HOH A 84 384 25 HOH HOH . F 6 HOH A 85 385 76 HOH HOH . F 6 HOH A 86 386 83 HOH HOH . F 6 HOH A 87 387 84 HOH HOH . F 6 HOH A 88 388 97 HOH HOH . F 6 HOH A 89 389 86 HOH HOH . F 6 HOH A 90 390 74 HOH HOH . F 6 HOH A 91 391 93 HOH HOH . F 6 HOH A 92 392 69 HOH HOH . F 6 HOH A 93 393 47 HOH HOH . F 6 HOH A 94 394 109 HOH HOH . F 6 HOH A 95 395 100 HOH HOH . F 6 HOH A 96 396 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO . . . D 4 0.819 1.189 -17.242 1 11.03 ? N NO 203 A 1 HETATM 2 O O NO . . . D 4 0.686 0.075 -17.847 1 19.03 ? O NO 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 2 #