data_5VZS # _model_server_result.job_id aGLDEizYLSa6ZRFRWpCMzQ _model_server_result.datetime_utc '2024-11-24 19:36:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vzs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5VZS # _exptl.entry_id 5VZS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 102.08 _cell.angle_beta 106.79 _cell.angle_gamma 89.36 _cell.entry_id 5VZS _cell.length_a 29.986 _cell.length_b 41.878 _cell.length_c 59.895 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VZS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 159 n n C1 C2 EDO sing 160 n n C1 H11 EDO sing 161 n n C1 H12 EDO sing 162 n n O1 HO1 EDO sing 163 n n C2 O2 EDO sing 164 n n C2 H21 EDO sing 165 n n C2 H22 EDO sing 166 n n O2 HO2 EDO sing 167 n n # _atom_sites.entry_id 5VZS _atom_sites.fract_transf_matrix[1][1] 0.033349 _atom_sites.fract_transf_matrix[1][2] -0.000374 _atom_sites.fract_transf_matrix[1][3] 0.010219 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02388 _atom_sites.fract_transf_matrix[2][3] 0.005263 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 1 EDO EDO . D 3 9U4 A 1 202 1 9U4 DRG . E 2 EDO B 1 201 2 EDO EDO . F 2 EDO B 1 202 3 EDO EDO . G 3 9U4 B 1 203 1 9U4 DRG . H 4 HOH A 1 301 133 HOH HOH . H 4 HOH A 2 302 80 HOH HOH . H 4 HOH A 3 303 115 HOH HOH . H 4 HOH A 4 304 113 HOH HOH . H 4 HOH A 5 305 119 HOH HOH . H 4 HOH A 6 306 25 HOH HOH . H 4 HOH A 7 307 49 HOH HOH . H 4 HOH A 8 308 60 HOH HOH . H 4 HOH A 9 309 100 HOH HOH . H 4 HOH A 10 310 47 HOH HOH . H 4 HOH A 11 311 96 HOH HOH . H 4 HOH A 12 312 40 HOH HOH . H 4 HOH A 13 313 78 HOH HOH . H 4 HOH A 14 314 29 HOH HOH . H 4 HOH A 15 315 37 HOH HOH . H 4 HOH A 16 316 114 HOH HOH . H 4 HOH A 17 317 69 HOH HOH . H 4 HOH A 18 318 4 HOH HOH . H 4 HOH A 19 319 50 HOH HOH . H 4 HOH A 20 320 63 HOH HOH . H 4 HOH A 21 321 73 HOH HOH . H 4 HOH A 22 322 66 HOH HOH . H 4 HOH A 23 323 86 HOH HOH . H 4 HOH A 24 324 102 HOH HOH . H 4 HOH A 25 325 23 HOH HOH . H 4 HOH A 26 326 8 HOH HOH . H 4 HOH A 27 327 33 HOH HOH . H 4 HOH A 28 328 34 HOH HOH . H 4 HOH A 29 329 55 HOH HOH . H 4 HOH A 30 330 108 HOH HOH . H 4 HOH A 31 331 105 HOH HOH . H 4 HOH A 32 332 7 HOH HOH . H 4 HOH A 33 333 95 HOH HOH . H 4 HOH A 34 334 122 HOH HOH . H 4 HOH A 35 335 91 HOH HOH . H 4 HOH A 36 336 32 HOH HOH . H 4 HOH A 37 337 98 HOH HOH . H 4 HOH A 38 338 39 HOH HOH . H 4 HOH A 39 339 65 HOH HOH . H 4 HOH A 40 340 85 HOH HOH . H 4 HOH A 41 341 87 HOH HOH . H 4 HOH A 42 342 104 HOH HOH . H 4 HOH A 43 343 30 HOH HOH . H 4 HOH A 44 344 79 HOH HOH . H 4 HOH A 45 345 53 HOH HOH . H 4 HOH A 46 346 52 HOH HOH . H 4 HOH A 47 347 127 HOH HOH . H 4 HOH A 48 348 5 HOH HOH . H 4 HOH A 49 349 97 HOH HOH . H 4 HOH A 50 350 42 HOH HOH . H 4 HOH A 51 351 124 HOH HOH . H 4 HOH A 52 352 82 HOH HOH . H 4 HOH A 53 353 99 HOH HOH . H 4 HOH A 54 354 138 HOH HOH . H 4 HOH A 55 355 74 HOH HOH . H 4 HOH A 56 356 139 HOH HOH . H 4 HOH A 57 357 83 HOH HOH . I 4 HOH B 1 301 59 HOH HOH . I 4 HOH B 2 302 130 HOH HOH . I 4 HOH B 3 303 101 HOH HOH . I 4 HOH B 4 304 121 HOH HOH . I 4 HOH B 5 305 28 HOH HOH . I 4 HOH B 6 306 142 HOH HOH . I 4 HOH B 7 307 6 HOH HOH . I 4 HOH B 8 308 90 HOH HOH . I 4 HOH B 9 309 72 HOH HOH . I 4 HOH B 10 310 3 HOH HOH . I 4 HOH B 11 311 12 HOH HOH . I 4 HOH B 12 312 31 HOH HOH . I 4 HOH B 13 313 58 HOH HOH . I 4 HOH B 14 314 48 HOH HOH . I 4 HOH B 15 315 38 HOH HOH . I 4 HOH B 16 316 35 HOH HOH . I 4 HOH B 17 317 77 HOH HOH . I 4 HOH B 18 318 11 HOH HOH . I 4 HOH B 19 319 14 HOH HOH . I 4 HOH B 20 320 67 HOH HOH . I 4 HOH B 21 321 24 HOH HOH . I 4 HOH B 22 322 106 HOH HOH . I 4 HOH B 23 323 27 HOH HOH . I 4 HOH B 24 324 92 HOH HOH . I 4 HOH B 25 325 64 HOH HOH . I 4 HOH B 26 326 44 HOH HOH . I 4 HOH B 27 327 120 HOH HOH . I 4 HOH B 28 328 118 HOH HOH . I 4 HOH B 29 329 16 HOH HOH . I 4 HOH B 30 330 10 HOH HOH . I 4 HOH B 31 331 19 HOH HOH . I 4 HOH B 32 332 9 HOH HOH . I 4 HOH B 33 333 71 HOH HOH . I 4 HOH B 34 334 88 HOH HOH . I 4 HOH B 35 335 57 HOH HOH . I 4 HOH B 36 336 76 HOH HOH . I 4 HOH B 37 337 70 HOH HOH . I 4 HOH B 38 338 51 HOH HOH . I 4 HOH B 39 339 89 HOH HOH . I 4 HOH B 40 340 17 HOH HOH . I 4 HOH B 41 341 128 HOH HOH . I 4 HOH B 42 342 137 HOH HOH . I 4 HOH B 43 343 26 HOH HOH . I 4 HOH B 44 344 62 HOH HOH . I 4 HOH B 45 345 36 HOH HOH . I 4 HOH B 46 346 13 HOH HOH . I 4 HOH B 47 347 61 HOH HOH . I 4 HOH B 48 348 43 HOH HOH . I 4 HOH B 49 349 131 HOH HOH . I 4 HOH B 50 350 1 HOH HOH . I 4 HOH B 51 351 68 HOH HOH . I 4 HOH B 52 352 117 HOH HOH . I 4 HOH B 53 353 54 HOH HOH . I 4 HOH B 54 354 22 HOH HOH . I 4 HOH B 55 355 134 HOH HOH . I 4 HOH B 56 356 18 HOH HOH . I 4 HOH B 57 357 21 HOH HOH . I 4 HOH B 58 358 46 HOH HOH . I 4 HOH B 59 359 75 HOH HOH . I 4 HOH B 60 360 94 HOH HOH . I 4 HOH B 61 361 111 HOH HOH . I 4 HOH B 62 362 2 HOH HOH . I 4 HOH B 63 363 93 HOH HOH . I 4 HOH B 64 364 45 HOH HOH . I 4 HOH B 65 365 126 HOH HOH . I 4 HOH B 66 366 107 HOH HOH . I 4 HOH B 67 367 109 HOH HOH . I 4 HOH B 68 368 20 HOH HOH . I 4 HOH B 69 369 81 HOH HOH . I 4 HOH B 70 370 123 HOH HOH . I 4 HOH B 71 371 103 HOH HOH . I 4 HOH B 72 372 110 HOH HOH . I 4 HOH B 73 373 125 HOH HOH . I 4 HOH B 74 374 56 HOH HOH . I 4 HOH B 75 375 140 HOH HOH . I 4 HOH B 76 376 41 HOH HOH . I 4 HOH B 77 377 129 HOH HOH . I 4 HOH B 78 378 15 HOH HOH . I 4 HOH B 79 379 141 HOH HOH . I 4 HOH B 80 380 135 HOH HOH . I 4 HOH B 81 381 112 HOH HOH . I 4 HOH B 82 382 136 HOH HOH . I 4 HOH B 83 383 116 HOH HOH . I 4 HOH B 84 384 132 HOH HOH . I 4 HOH B 85 385 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 11.524 -11.878 23.715 1 40.44 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . C 2 10.136 -12.189 23.912 1 33.8 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . C 2 12.362 -12.339 24.898 1 41.26 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . C 2 12.262 -13.758 25.023 1 38.04 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #