data_5VZT
#
_model_server_result.job_id            dtd8xMg-7iNORQtaJ_XWoA 
_model_server_result.datetime_utc      '2025-01-05 07:08:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vzt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    5VZT 
#
_exptl.entry_id    5VZT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.62 
_cell.angle_gamma         90 
_cell.entry_id            5VZT 
_cell.length_a            87.521 
_cell.length_b            156.31 
_cell.length_c            154.596 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VZT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,Q,R 1 1 
C,D,K,L,M,N,O,P,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 155 B CYS 206 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc2 B NE2 HIS 163 B HIS 214 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc3 B SG CYS 179 B CYS 230 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc4 B NE2 HIS 185 B HIS 236 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc5 D SG CYS 155 D CYS 206 1_555 K ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc6 D NE2 HIS 163 D HIS 214 1_555 K ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc7 D SG CYS 179 D CYS 230 1_555 K ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc8 D NE2 HIS 185 D HIS 236 1_555 K ZN ZN . D ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,4-DITHIOTHREITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTT sing 83 n n 
S1 HS1 DTT sing 84 n n 
C1 C2 DTT sing 85 n n 
C1 H11 DTT sing 86 n n 
C1 H12 DTT sing 87 n n 
C2 O2 DTT sing 88 n n 
C2 C3 DTT sing 89 n n 
C2 H2 DTT sing 90 n n 
O2 HO2 DTT sing 91 n n 
C3 O3 DTT sing 92 n n 
C3 C4 DTT sing 93 n n 
C3 H3 DTT sing 94 n n 
O3 HO3 DTT sing 95 n n 
C4 S4 DTT sing 96 n n 
C4 H41 DTT sing 97 n n 
C4 H42 DTT sing 98 n n 
S4 HS2 DTT sing 99 n n 
#
_atom_sites.entry_id                     5VZT 
_atom_sites.fract_transf_matrix[1][1]    0.011426 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002768 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006398 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN B 1 601 601 ZN ZN . 
F 4 DTT B 1 602 1 DTT DTT . 
G 5 PO4 B 1 603 6 PO4 PO4 . 
H 5 PO4 B 1 604 7 PO4 PO4 . 
I 5 PO4 B 1 605 8 PO4 PO4 . 
J 5 PO4 B 1 606 10 PO4 PO4 . 
K 3 ZN D 1 601 601 ZN ZN . 
L 4 DTT D 1 602 2 DTT DTT . 
M 5 PO4 D 1 603 3 PO4 PO4 . 
N 5 PO4 D 1 604 4 PO4 PO4 . 
O 5 PO4 D 1 605 5 PO4 PO4 . 
P 5 PO4 D 1 606 9 PO4 PO4 . 
Q 6 HOH A 1 1201 26 HOH HOH . 
Q 6 HOH A 2 1202 51 HOH HOH . 
Q 6 HOH A 3 1203 85 HOH HOH . 
Q 6 HOH A 4 1204 41 HOH HOH . 
Q 6 HOH A 5 1205 14 HOH HOH . 
Q 6 HOH A 6 1206 54 HOH HOH . 
Q 6 HOH A 7 1207 70 HOH HOH . 
Q 6 HOH A 8 1208 39 HOH HOH . 
Q 6 HOH A 9 1209 49 HOH HOH . 
Q 6 HOH A 10 1210 36 HOH HOH . 
Q 6 HOH A 11 1211 75 HOH HOH . 
Q 6 HOH A 12 1212 60 HOH HOH . 
Q 6 HOH A 13 1213 71 HOH HOH . 
Q 6 HOH A 14 1214 44 HOH HOH . 
Q 6 HOH A 15 1215 80 HOH HOH . 
Q 6 HOH A 16 1216 97 HOH HOH . 
Q 6 HOH A 17 1217 93 HOH HOH . 
Q 6 HOH A 18 1218 73 HOH HOH . 
Q 6 HOH A 19 1219 37 HOH HOH . 
Q 6 HOH A 20 1220 61 HOH HOH . 
R 6 HOH B 1 701 24 HOH HOH . 
R 6 HOH B 2 702 78 HOH HOH . 
R 6 HOH B 3 703 82 HOH HOH . 
R 6 HOH B 4 704 67 HOH HOH . 
R 6 HOH B 5 705 16 HOH HOH . 
R 6 HOH B 6 706 46 HOH HOH . 
R 6 HOH B 7 707 13 HOH HOH . 
R 6 HOH B 8 708 55 HOH HOH . 
R 6 HOH B 9 709 53 HOH HOH . 
R 6 HOH B 10 710 25 HOH HOH . 
R 6 HOH B 11 711 11 HOH HOH . 
R 6 HOH B 12 712 48 HOH HOH . 
R 6 HOH B 13 713 92 HOH HOH . 
R 6 HOH B 14 714 45 HOH HOH . 
R 6 HOH B 15 715 86 HOH HOH . 
R 6 HOH B 16 716 88 HOH HOH . 
R 6 HOH B 17 717 96 HOH HOH . 
R 6 HOH B 18 718 22 HOH HOH . 
R 6 HOH B 19 719 68 HOH HOH . 
R 6 HOH B 20 720 30 HOH HOH . 
R 6 HOH B 21 721 27 HOH HOH . 
R 6 HOH B 22 722 17 HOH HOH . 
R 6 HOH B 23 723 66 HOH HOH . 
R 6 HOH B 24 724 43 HOH HOH . 
R 6 HOH B 25 725 32 HOH HOH . 
R 6 HOH B 26 726 40 HOH HOH . 
R 6 HOH B 27 727 35 HOH HOH . 
R 6 HOH B 28 728 89 HOH HOH . 
R 6 HOH B 29 729 29 HOH HOH . 
R 6 HOH B 30 730 50 HOH HOH . 
R 6 HOH B 31 731 64 HOH HOH . 
R 6 HOH B 32 732 94 HOH HOH . 
R 6 HOH B 33 733 15 HOH HOH . 
R 6 HOH B 34 734 76 HOH HOH . 
R 6 HOH B 35 735 28 HOH HOH . 
R 6 HOH B 36 736 63 HOH HOH . 
R 6 HOH B 37 737 38 HOH HOH . 
R 6 HOH B 38 738 77 HOH HOH . 
R 6 HOH B 39 739 81 HOH HOH . 
R 6 HOH B 40 740 79 HOH HOH . 
R 6 HOH B 41 741 12 HOH HOH . 
R 6 HOH B 42 742 95 HOH HOH . 
R 6 HOH B 43 743 20 HOH HOH . 
R 6 HOH B 44 744 84 HOH HOH . 
S 6 HOH D 1 701 21 HOH HOH . 
S 6 HOH D 2 702 65 HOH HOH . 
S 6 HOH D 3 703 42 HOH HOH . 
S 6 HOH D 4 704 74 HOH HOH . 
S 6 HOH D 5 705 91 HOH HOH . 
S 6 HOH D 6 706 58 HOH HOH . 
S 6 HOH D 7 707 90 HOH HOH . 
S 6 HOH D 8 708 31 HOH HOH . 
S 6 HOH D 9 709 69 HOH HOH . 
S 6 HOH D 10 710 33 HOH HOH . 
S 6 HOH D 11 711 34 HOH HOH . 
S 6 HOH D 12 712 87 HOH HOH . 
S 6 HOH D 13 713 62 HOH HOH . 
S 6 HOH D 14 714 57 HOH HOH . 
S 6 HOH D 15 715 52 HOH HOH . 
S 6 HOH D 16 716 23 HOH HOH . 
S 6 HOH D 17 717 72 HOH HOH . 
S 6 HOH D 18 718 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTT . A . L 4 19.045 -14.828 37.447 0.5 78.02 ? S1 DTT 602 D 1 
HETATM 2 S S1 DTT . B . L 4 20.1 -14.155 35.227 0.5 65.61 ? S1 DTT 602 D 1 
HETATM 3 C C1 DTT . A . L 4 19.403 -13.071 37.137 0.5 106.43 ? C1 DTT 602 D 1 
HETATM 4 C C1 DTT . B . L 4 21.55 -13.14 34.846 0.5 49.78 ? C1 DTT 602 D 1 
HETATM 5 C C2 DTT . A . L 4 20.646 -12.644 37.913 0.5 90.34 ? C2 DTT 602 D 1 
HETATM 6 C C2 DTT . B . L 4 21.914 -12.503 36.158 0.5 48.98 ? C2 DTT 602 D 1 
HETATM 7 O O2 DTT . A . L 4 21.306 -11.422 37.43 0.5 47.7 ? O2 DTT 602 D 1 
HETATM 8 O O2 DTT . B . L 4 22.217 -11.128 35.859 0.5 24.06 ? O2 DTT 602 D 1 
HETATM 9 C C3 DTT . A . L 4 21.448 -13.937 37.847 0.5 70.09 ? C3 DTT 602 D 1 
HETATM 10 C C3 DTT . B . L 4 22.89 -13.492 36.916 0.5 58.14 ? C3 DTT 602 D 1 
HETATM 11 O O3 DTT . A . L 4 22.128 -14.02 36.576 0.5 50.87 ? O3 DTT 602 D 1 
HETATM 12 O O3 DTT . B . L 4 24.325 -13.281 36.841 0.5 38.75 ? O3 DTT 602 D 1 
HETATM 13 C C4 DTT . A . L 4 22.297 -14.007 39.11 0.5 64.33 ? C4 DTT 602 D 1 
HETATM 14 C C4 DTT . B . L 4 22.528 -13.605 38.415 0.5 65.5 ? C4 DTT 602 D 1 
HETATM 15 S S4 DTT . A . L 4 21.233 -13.646 40.53 0.5 50.51 ? S4 DTT 602 D 1 
HETATM 16 S S4 DTT . B . L 4 23.382 -14.935 39.323 0.5 72.65 ? S4 DTT 602 D 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          30 
_model_server_stats.element_count           16 
#