data_5VZV # _model_server_result.job_id g3uUXtCotXdF9G-5CoKrQQ _model_server_result.datetime_utc '2024-11-04 20:37:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 5VZV # _exptl.entry_id 5VZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VZV _cell.length_a 91.717 _cell.length_b 142.464 _cell.length_c 45.427 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H,I,J,L 1 1 B,F,G,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 45.427 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 31 A CYS 31 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A SG CYS 34 A CYS 34 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A SG CYS 51 A CYS 51 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 A ND1 HIS 53 A HIS 53 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc5 A SG CYS 56 A CYS 56 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc6 A SG CYS 59 A CYS 59 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc7 A SG CYS 72 A CYS 72 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc8 A OD2 ASP 75 A ASP 75 1_555 E ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc9 B SG CYS 31 B CYS 31 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc10 B SG CYS 34 B CYS 34 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc11 B SG CYS 51 B CYS 51 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 B ND1 HIS 53 B HIS 53 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc13 B SG CYS 56 B CYS 56 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc14 B SG CYS 59 B CYS 59 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc15 B SG CYS 72 B CYS 72 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc16 B OD2 ASP 75 B ASP 75 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc17 C SG CYS 31 C CYS 31 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc18 C SG CYS 34 C CYS 34 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc19 C SG CYS 51 C CYS 51 1_555 I ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc20 C ND1 HIS 53 C HIS 53 1_555 I ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc21 C SG CYS 56 C CYS 56 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc22 C SG CYS 59 C CYS 59 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc23 C SG CYS 72 C CYS 72 1_555 I ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc24 C OD2 ASP 75 C ASP 75 1_555 I ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VZV _atom_sites.fract_transf_matrix[1][1] 0.010903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 201 1 ZN ZN . E 2 ZN A 1 202 2 ZN ZN . F 2 ZN B 1 201 3 ZN ZN . G 2 ZN B 1 202 4 ZN ZN . H 2 ZN C 1 201 5 ZN ZN . I 2 ZN C 1 202 6 ZN ZN . J 3 HOH A 1 301 110 HOH HOH . J 3 HOH A 2 302 123 HOH HOH . J 3 HOH A 3 303 154 HOH HOH . J 3 HOH A 4 304 30 HOH HOH . J 3 HOH A 5 305 58 HOH HOH . J 3 HOH A 6 306 3 HOH HOH . J 3 HOH A 7 307 15 HOH HOH . J 3 HOH A 8 308 66 HOH HOH . J 3 HOH A 9 309 4 HOH HOH . J 3 HOH A 10 310 7 HOH HOH . J 3 HOH A 11 311 1 HOH HOH . J 3 HOH A 12 312 18 HOH HOH . J 3 HOH A 13 313 132 HOH HOH . J 3 HOH A 14 314 97 HOH HOH . J 3 HOH A 15 315 14 HOH HOH . J 3 HOH A 16 316 99 HOH HOH . J 3 HOH A 17 317 55 HOH HOH . J 3 HOH A 18 318 133 HOH HOH . J 3 HOH A 19 319 35 HOH HOH . J 3 HOH A 20 320 42 HOH HOH . J 3 HOH A 21 321 61 HOH HOH . J 3 HOH A 22 322 33 HOH HOH . J 3 HOH A 23 323 144 HOH HOH . J 3 HOH A 24 324 108 HOH HOH . J 3 HOH A 25 325 139 HOH HOH . J 3 HOH A 26 326 90 HOH HOH . J 3 HOH A 27 327 114 HOH HOH . J 3 HOH A 28 328 8 HOH HOH . J 3 HOH A 29 329 47 HOH HOH . J 3 HOH A 30 330 81 HOH HOH . J 3 HOH A 31 331 93 HOH HOH . J 3 HOH A 32 332 84 HOH HOH . J 3 HOH A 33 333 73 HOH HOH . J 3 HOH A 34 334 130 HOH HOH . J 3 HOH A 35 335 180 HOH HOH . J 3 HOH A 36 336 94 HOH HOH . J 3 HOH A 37 337 170 HOH HOH . J 3 HOH A 38 338 89 HOH HOH . J 3 HOH A 39 339 160 HOH HOH . J 3 HOH A 40 340 134 HOH HOH . J 3 HOH A 41 341 95 HOH HOH . J 3 HOH A 42 342 121 HOH HOH . J 3 HOH A 43 343 37 HOH HOH . J 3 HOH A 44 344 141 HOH HOH . J 3 HOH A 45 345 122 HOH HOH . J 3 HOH A 46 346 124 HOH HOH . J 3 HOH A 47 347 104 HOH HOH . J 3 HOH A 48 348 181 HOH HOH . K 3 HOH B 1 301 5 HOH HOH . K 3 HOH B 2 302 79 HOH HOH . K 3 HOH B 3 303 111 HOH HOH . K 3 HOH B 4 304 24 HOH HOH . K 3 HOH B 5 305 63 HOH HOH . K 3 HOH B 6 306 129 HOH HOH . K 3 HOH B 7 307 9 HOH HOH . K 3 HOH B 8 308 88 HOH HOH . K 3 HOH B 9 309 146 HOH HOH . K 3 HOH B 10 310 12 HOH HOH . K 3 HOH B 11 311 168 HOH HOH . K 3 HOH B 12 312 57 HOH HOH . K 3 HOH B 13 313 62 HOH HOH . K 3 HOH B 14 314 52 HOH HOH . K 3 HOH B 15 315 40 HOH HOH . K 3 HOH B 16 316 67 HOH HOH . K 3 HOH B 17 317 166 HOH HOH . K 3 HOH B 18 318 48 HOH HOH . K 3 HOH B 19 319 74 HOH HOH . K 3 HOH B 20 320 127 HOH HOH . K 3 HOH B 21 321 25 HOH HOH . K 3 HOH B 22 322 65 HOH HOH . K 3 HOH B 23 323 117 HOH HOH . K 3 HOH B 24 324 20 HOH HOH . K 3 HOH B 25 325 64 HOH HOH . K 3 HOH B 26 326 43 HOH HOH . K 3 HOH B 27 327 75 HOH HOH . K 3 HOH B 28 328 140 HOH HOH . K 3 HOH B 29 329 183 HOH HOH . K 3 HOH B 30 330 59 HOH HOH . K 3 HOH B 31 331 182 HOH HOH . K 3 HOH B 32 332 107 HOH HOH . K 3 HOH B 33 333 145 HOH HOH . K 3 HOH B 34 334 115 HOH HOH . K 3 HOH B 35 335 172 HOH HOH . K 3 HOH B 36 336 76 HOH HOH . K 3 HOH B 37 337 128 HOH HOH . K 3 HOH B 38 338 60 HOH HOH . K 3 HOH B 39 339 164 HOH HOH . K 3 HOH B 40 340 151 HOH HOH . L 3 HOH C 1 301 173 HOH HOH . L 3 HOH C 2 302 44 HOH HOH . L 3 HOH C 3 303 54 HOH HOH . L 3 HOH C 4 304 31 HOH HOH . L 3 HOH C 5 305 23 HOH HOH . L 3 HOH C 6 306 161 HOH HOH . L 3 HOH C 7 307 56 HOH HOH . L 3 HOH C 8 308 34 HOH HOH . L 3 HOH C 9 309 27 HOH HOH . L 3 HOH C 10 310 13 HOH HOH . L 3 HOH C 11 311 71 HOH HOH . L 3 HOH C 12 312 38 HOH HOH . L 3 HOH C 13 313 2 HOH HOH . L 3 HOH C 14 314 100 HOH HOH . L 3 HOH C 15 315 68 HOH HOH . L 3 HOH C 16 316 28 HOH HOH . L 3 HOH C 17 317 103 HOH HOH . L 3 HOH C 18 318 6 HOH HOH . L 3 HOH C 19 319 16 HOH HOH . L 3 HOH C 20 320 157 HOH HOH . L 3 HOH C 21 321 36 HOH HOH . L 3 HOH C 22 322 11 HOH HOH . L 3 HOH C 23 323 32 HOH HOH . L 3 HOH C 24 324 26 HOH HOH . L 3 HOH C 25 325 10 HOH HOH . L 3 HOH C 26 326 17 HOH HOH . L 3 HOH C 27 327 78 HOH HOH . L 3 HOH C 28 328 69 HOH HOH . L 3 HOH C 29 329 19 HOH HOH . L 3 HOH C 30 330 50 HOH HOH . L 3 HOH C 31 331 136 HOH HOH . L 3 HOH C 32 332 21 HOH HOH . L 3 HOH C 33 333 169 HOH HOH . L 3 HOH C 34 334 113 HOH HOH . L 3 HOH C 35 335 87 HOH HOH . L 3 HOH C 36 336 92 HOH HOH . L 3 HOH C 37 337 45 HOH HOH . L 3 HOH C 38 338 39 HOH HOH . L 3 HOH C 39 339 22 HOH HOH . L 3 HOH C 40 340 51 HOH HOH . L 3 HOH C 41 341 49 HOH HOH . L 3 HOH C 42 342 162 HOH HOH . L 3 HOH C 43 343 29 HOH HOH . L 3 HOH C 44 344 118 HOH HOH . L 3 HOH C 45 345 86 HOH HOH . L 3 HOH C 46 346 85 HOH HOH . L 3 HOH C 47 347 77 HOH HOH . L 3 HOH C 48 348 171 HOH HOH . L 3 HOH C 49 349 143 HOH HOH . L 3 HOH C 50 350 158 HOH HOH . L 3 HOH C 51 351 116 HOH HOH . L 3 HOH C 52 352 98 HOH HOH . L 3 HOH C 53 353 165 HOH HOH . L 3 HOH C 54 354 156 HOH HOH . L 3 HOH C 55 355 153 HOH HOH . L 3 HOH C 56 356 159 HOH HOH . L 3 HOH C 57 357 174 HOH HOH . L 3 HOH C 58 358 131 HOH HOH . L 3 HOH C 59 359 150 HOH HOH . L 3 HOH C 60 360 163 HOH HOH . L 3 HOH C 61 361 91 HOH HOH . L 3 HOH C 62 362 178 HOH HOH . L 3 HOH C 63 363 126 HOH HOH . L 3 HOH C 64 364 83 HOH HOH . L 3 HOH C 65 365 70 HOH HOH . L 3 HOH C 66 366 46 HOH HOH . L 3 HOH C 67 367 80 HOH HOH . L 3 HOH C 68 368 41 HOH HOH . L 3 HOH C 69 369 142 HOH HOH . L 3 HOH C 70 370 101 HOH HOH . L 3 HOH C 71 371 112 HOH HOH . L 3 HOH C 72 372 167 HOH HOH . L 3 HOH C 73 373 53 HOH HOH . L 3 HOH C 74 374 179 HOH HOH . L 3 HOH C 75 375 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 31.665 _atom_site.Cartn_y 18.456 _atom_site.Cartn_z 22.794 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.93 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #