data_5VZX
#
_model_server_result.job_id            jxQFdRTPe8sQvuINKdRKrQ 
_model_server_result.datetime_utc      '2024-11-04 22:27:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vzx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    5VZX 
#
_exptl.entry_id    5VZX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VZX 
_cell.length_a            129.703 
_cell.length_b            129.703 
_cell.length_c            80.679 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VZX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 
A,B,E,F,G,H,I,J,K,L,T,U 2 1 
C,D,M,N,O,P,Q,R,S,V,W 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 139 H CYS 140 1_555 A SG CYS 195 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 B SG CYS 139 L CYS 134 1_555 B SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 139 E CYS 140 1_555 C SG CYS 195 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf7 D SG CYS 23 I CYS 23 1_555 D SG CYS 93 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 D SG CYS 139 I CYS 134 1_555 D SG CYS 199 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 83 n n 
N1 C6 EPE sing 84 n n 
N1 C9 EPE sing 85 n n 
C2 C3 EPE sing 86 n n 
C2 H21 EPE sing 87 n n 
C2 H22 EPE sing 88 n n 
C3 N4 EPE sing 89 n n 
C3 H31 EPE sing 90 n n 
C3 H32 EPE sing 91 n n 
N4 C5 EPE sing 92 n n 
N4 C7 EPE sing 93 n n 
C5 C6 EPE sing 94 n n 
C5 H51 EPE sing 95 n n 
C5 H52 EPE sing 96 n n 
C6 H61 EPE sing 97 n n 
C6 H62 EPE sing 98 n n 
C7 C8 EPE sing 99 n n 
C7 H71 EPE sing 100 n n 
C7 H72 EPE sing 101 n n 
C8 O8 EPE sing 102 n n 
C8 H81 EPE sing 103 n n 
C8 H82 EPE sing 104 n n 
O8 HO8 EPE sing 105 n n 
C9 C10 EPE sing 106 n n 
C9 H91 EPE sing 107 n n 
C9 H92 EPE sing 108 n n 
C10 S EPE sing 109 n n 
C10 H101 EPE sing 110 n n 
C10 H102 EPE sing 111 n n 
S O1S EPE doub 112 n n 
S O2S EPE doub 113 n n 
S O3S EPE sing 114 n n 
O3S HOS3 EPE sing 115 n n 
#
_atom_sites.entry_id                     5VZX 
_atom_sites.fract_transf_matrix[1][1]    0.00771 
_atom_sites.fract_transf_matrix[1][2]    0.004451 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 H 1 301 4 SO4 SO4 . 
F 4 MES H 1 302 14 MES MES . 
G 5 EPE L 1 301 2 EPE EPE . 
H 3 SO4 L 1 302 3 SO4 SO4 . 
I 3 SO4 L 1 303 5 SO4 SO4 . 
J 3 SO4 L 1 304 8 SO4 SO4 . 
K 3 SO4 L 1 305 11 SO4 SO4 . 
L 3 SO4 L 1 306 12 SO4 SO4 . 
M 3 SO4 E 1 301 6 SO4 SO4 . 
N 4 MES E 1 302 15 MES MES . 
O 5 EPE I 1 301 1 EPE EPE . 
P 3 SO4 I 1 302 7 SO4 SO4 . 
Q 3 SO4 I 1 303 9 SO4 SO4 . 
R 3 SO4 I 1 304 10 SO4 SO4 . 
S 3 SO4 I 1 305 13 SO4 SO4 . 
T 6 HOH H 1 401 84 HOH HOH . 
T 6 HOH H 2 402 81 HOH HOH . 
T 6 HOH H 3 403 16 HOH HOH . 
T 6 HOH H 4 404 102 HOH HOH . 
T 6 HOH H 5 405 4 HOH HOH . 
T 6 HOH H 6 406 82 HOH HOH . 
T 6 HOH H 7 407 22 HOH HOH . 
T 6 HOH H 8 408 14 HOH HOH . 
T 6 HOH H 9 409 13 HOH HOH . 
T 6 HOH H 10 410 101 HOH HOH . 
T 6 HOH H 11 411 25 HOH HOH . 
T 6 HOH H 12 412 118 HOH HOH . 
T 6 HOH H 13 413 105 HOH HOH . 
T 6 HOH H 14 414 100 HOH HOH . 
T 6 HOH H 15 415 98 HOH HOH . 
T 6 HOH H 16 416 12 HOH HOH . 
T 6 HOH H 17 417 44 HOH HOH . 
T 6 HOH H 18 418 89 HOH HOH . 
T 6 HOH H 19 419 67 HOH HOH . 
T 6 HOH H 20 420 114 HOH HOH . 
T 6 HOH H 21 421 131 HOH HOH . 
T 6 HOH H 22 422 91 HOH HOH . 
T 6 HOH H 23 423 130 HOH HOH . 
T 6 HOH H 24 424 127 HOH HOH . 
T 6 HOH H 25 425 19 HOH HOH . 
T 6 HOH H 26 426 106 HOH HOH . 
T 6 HOH H 27 427 58 HOH HOH . 
T 6 HOH H 28 428 126 HOH HOH . 
T 6 HOH H 29 429 104 HOH HOH . 
U 6 HOH L 1 401 11 HOH HOH . 
U 6 HOH L 2 402 122 HOH HOH . 
U 6 HOH L 3 403 34 HOH HOH . 
U 6 HOH L 4 404 10 HOH HOH . 
U 6 HOH L 5 405 38 HOH HOH . 
U 6 HOH L 6 406 18 HOH HOH . 
U 6 HOH L 7 407 31 HOH HOH . 
U 6 HOH L 8 408 39 HOH HOH . 
U 6 HOH L 9 409 63 HOH HOH . 
U 6 HOH L 10 410 2 HOH HOH . 
U 6 HOH L 11 411 37 HOH HOH . 
U 6 HOH L 12 412 87 HOH HOH . 
U 6 HOH L 13 413 94 HOH HOH . 
U 6 HOH L 14 414 53 HOH HOH . 
U 6 HOH L 15 415 33 HOH HOH . 
U 6 HOH L 16 416 96 HOH HOH . 
U 6 HOH L 17 417 30 HOH HOH . 
U 6 HOH L 18 418 36 HOH HOH . 
U 6 HOH L 19 419 113 HOH HOH . 
U 6 HOH L 20 420 7 HOH HOH . 
U 6 HOH L 21 421 78 HOH HOH . 
U 6 HOH L 22 422 24 HOH HOH . 
U 6 HOH L 23 423 48 HOH HOH . 
U 6 HOH L 24 424 40 HOH HOH . 
U 6 HOH L 25 425 65 HOH HOH . 
U 6 HOH L 26 426 23 HOH HOH . 
U 6 HOH L 27 427 60 HOH HOH . 
U 6 HOH L 28 428 74 HOH HOH . 
U 6 HOH L 29 429 3 HOH HOH . 
U 6 HOH L 30 430 120 HOH HOH . 
U 6 HOH L 31 431 54 HOH HOH . 
U 6 HOH L 32 432 68 HOH HOH . 
U 6 HOH L 33 433 41 HOH HOH . 
U 6 HOH L 34 434 55 HOH HOH . 
U 6 HOH L 35 435 134 HOH HOH . 
U 6 HOH L 36 436 121 HOH HOH . 
U 6 HOH L 37 437 132 HOH HOH . 
U 6 HOH L 38 438 136 HOH HOH . 
U 6 HOH L 39 439 75 HOH HOH . 
U 6 HOH L 40 440 125 HOH HOH . 
U 6 HOH L 41 441 117 HOH HOH . 
U 6 HOH L 42 442 42 HOH HOH . 
V 6 HOH E 1 401 77 HOH HOH . 
V 6 HOH E 2 402 51 HOH HOH . 
V 6 HOH E 3 403 47 HOH HOH . 
V 6 HOH E 4 404 5 HOH HOH . 
V 6 HOH E 5 405 71 HOH HOH . 
V 6 HOH E 6 406 21 HOH HOH . 
V 6 HOH E 7 407 111 HOH HOH . 
V 6 HOH E 8 408 61 HOH HOH . 
V 6 HOH E 9 409 50 HOH HOH . 
V 6 HOH E 10 410 35 HOH HOH . 
V 6 HOH E 11 411 79 HOH HOH . 
V 6 HOH E 12 412 20 HOH HOH . 
V 6 HOH E 13 413 90 HOH HOH . 
V 6 HOH E 14 414 56 HOH HOH . 
V 6 HOH E 15 415 59 HOH HOH . 
V 6 HOH E 16 416 9 HOH HOH . 
V 6 HOH E 17 417 73 HOH HOH . 
V 6 HOH E 18 418 46 HOH HOH . 
V 6 HOH E 19 419 57 HOH HOH . 
V 6 HOH E 20 420 99 HOH HOH . 
V 6 HOH E 21 421 115 HOH HOH . 
V 6 HOH E 22 422 17 HOH HOH . 
V 6 HOH E 23 423 110 HOH HOH . 
V 6 HOH E 24 424 129 HOH HOH . 
V 6 HOH E 25 425 95 HOH HOH . 
V 6 HOH E 26 426 119 HOH HOH . 
W 6 HOH I 1 401 6 HOH HOH . 
W 6 HOH I 2 402 26 HOH HOH . 
W 6 HOH I 3 403 8 HOH HOH . 
W 6 HOH I 4 404 28 HOH HOH . 
W 6 HOH I 5 405 109 HOH HOH . 
W 6 HOH I 6 406 27 HOH HOH . 
W 6 HOH I 7 407 45 HOH HOH . 
W 6 HOH I 8 408 69 HOH HOH . 
W 6 HOH I 9 409 1 HOH HOH . 
W 6 HOH I 10 410 83 HOH HOH . 
W 6 HOH I 11 411 15 HOH HOH . 
W 6 HOH I 12 412 52 HOH HOH . 
W 6 HOH I 13 413 86 HOH HOH . 
W 6 HOH I 14 414 123 HOH HOH . 
W 6 HOH I 15 415 88 HOH HOH . 
W 6 HOH I 16 416 62 HOH HOH . 
W 6 HOH I 17 417 32 HOH HOH . 
W 6 HOH I 18 418 116 HOH HOH . 
W 6 HOH I 19 419 92 HOH HOH . 
W 6 HOH I 20 420 80 HOH HOH . 
W 6 HOH I 21 421 43 HOH HOH . 
W 6 HOH I 22 422 97 HOH HOH . 
W 6 HOH I 23 423 64 HOH HOH . 
W 6 HOH I 24 424 133 HOH HOH . 
W 6 HOH I 25 425 112 HOH HOH . 
W 6 HOH I 26 426 29 HOH HOH . 
W 6 HOH I 27 427 108 HOH HOH . 
W 6 HOH I 28 428 70 HOH HOH . 
W 6 HOH I 29 429 76 HOH HOH . 
W 6 HOH I 30 430 85 HOH HOH . 
W 6 HOH I 31 431 66 HOH HOH . 
W 6 HOH I 32 432 72 HOH HOH . 
W 6 HOH I 33 433 128 HOH HOH . 
W 6 HOH I 34 434 124 HOH HOH . 
W 6 HOH I 35 435 135 HOH HOH . 
W 6 HOH I 36 436 107 HOH HOH . 
W 6 HOH I 37 437 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . G 5 -9.554 62.726 35.981 1 120.35 ? N1 EPE 301 L 1 
HETATM 2 C C2 EPE . . . G 5 -10.753 63.048 36.772 1 119.16 ? C2 EPE 301 L 1 
HETATM 3 C C3 EPE . . . G 5 -10.651 64.41 37.453 1 113.03 ? C3 EPE 301 L 1 
HETATM 4 N N4 EPE . . . G 5 -9.397 64.602 38.148 1 108.73 ? N4 EPE 301 L 1 
HETATM 5 C C5 EPE . . . G 5 -8.189 64.059 37.551 1 116.42 ? C5 EPE 301 L 1 
HETATM 6 C C6 EPE . . . G 5 -8.382 62.702 36.874 1 120.72 ? C6 EPE 301 L 1 
HETATM 7 C C7 EPE . . . G 5 -9.282 65.764 39.006 1 101.44 ? C7 EPE 301 L 1 
HETATM 8 C C8 EPE . . . G 5 -9.347 67.075 38.23 1 98.44 ? C8 EPE 301 L 1 
HETATM 9 O O8 EPE . . . G 5 -8.219 67.215 37.394 1 97.38 ? O8 EPE 301 L 1 
HETATM 10 C C9 EPE . . . G 5 -9.702 61.415 35.311 1 116.26 ? C9 EPE 301 L 1 
HETATM 11 C C10 EPE . . . G 5 -10.365 60.395 36.237 1 114.19 ? C10 EPE 301 L 1 
HETATM 12 S S EPE . . . G 5 -11.578 59.297 35.455 1 101.49 ? S EPE 301 L 1 
HETATM 13 O O1S EPE . . . G 5 -12.928 59.683 35.848 1 103.8 ? O1S EPE 301 L 1 
HETATM 14 O O2S EPE . . . G 5 -11.461 59.382 34.004 1 106.73 ? O2S EPE 301 L 1 
HETATM 15 O O3S EPE . . . G 5 -11.361 57.922 35.894 1 99.08 ? O3S EPE 301 L 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#