data_5VZX # _model_server_result.job_id gYA2t5IEjPKOB03J7DmR0w _model_server_result.datetime_utc '2024-11-04 22:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vzx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":306}' # _entry.id 5VZX # _exptl.entry_id 5VZX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VZX _cell.length_a 129.703 _cell.length_b 129.703 _cell.length_c 80.679 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VZX _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 A,B,E,F,G,H,I,J,K,L,T,U 2 1 C,D,M,N,O,P,Q,R,S,V,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 139 H CYS 140 1_555 A SG CYS 195 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 B SG CYS 139 L CYS 134 1_555 B SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 C SG CYS 22 E CYS 22 1_555 C SG CYS 96 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 139 E CYS 140 1_555 C SG CYS 195 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 D SG CYS 23 I CYS 23 1_555 D SG CYS 93 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 D SG CYS 139 I CYS 134 1_555 D SG CYS 199 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 348 n n S O2 SO4 doub 349 n n S O3 SO4 sing 350 n n S O4 SO4 sing 351 n n # _atom_sites.entry_id 5VZX _atom_sites.fract_transf_matrix[1][1] 0.00771 _atom_sites.fract_transf_matrix[1][2] 0.004451 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 H 1 301 4 SO4 SO4 . F 4 MES H 1 302 14 MES MES . G 5 EPE L 1 301 2 EPE EPE . H 3 SO4 L 1 302 3 SO4 SO4 . I 3 SO4 L 1 303 5 SO4 SO4 . J 3 SO4 L 1 304 8 SO4 SO4 . K 3 SO4 L 1 305 11 SO4 SO4 . L 3 SO4 L 1 306 12 SO4 SO4 . M 3 SO4 E 1 301 6 SO4 SO4 . N 4 MES E 1 302 15 MES MES . O 5 EPE I 1 301 1 EPE EPE . P 3 SO4 I 1 302 7 SO4 SO4 . Q 3 SO4 I 1 303 9 SO4 SO4 . R 3 SO4 I 1 304 10 SO4 SO4 . S 3 SO4 I 1 305 13 SO4 SO4 . T 6 HOH H 1 401 84 HOH HOH . T 6 HOH H 2 402 81 HOH HOH . T 6 HOH H 3 403 16 HOH HOH . T 6 HOH H 4 404 102 HOH HOH . T 6 HOH H 5 405 4 HOH HOH . T 6 HOH H 6 406 82 HOH HOH . T 6 HOH H 7 407 22 HOH HOH . T 6 HOH H 8 408 14 HOH HOH . T 6 HOH H 9 409 13 HOH HOH . T 6 HOH H 10 410 101 HOH HOH . T 6 HOH H 11 411 25 HOH HOH . T 6 HOH H 12 412 118 HOH HOH . T 6 HOH H 13 413 105 HOH HOH . T 6 HOH H 14 414 100 HOH HOH . T 6 HOH H 15 415 98 HOH HOH . T 6 HOH H 16 416 12 HOH HOH . T 6 HOH H 17 417 44 HOH HOH . T 6 HOH H 18 418 89 HOH HOH . T 6 HOH H 19 419 67 HOH HOH . T 6 HOH H 20 420 114 HOH HOH . T 6 HOH H 21 421 131 HOH HOH . T 6 HOH H 22 422 91 HOH HOH . T 6 HOH H 23 423 130 HOH HOH . T 6 HOH H 24 424 127 HOH HOH . T 6 HOH H 25 425 19 HOH HOH . T 6 HOH H 26 426 106 HOH HOH . T 6 HOH H 27 427 58 HOH HOH . T 6 HOH H 28 428 126 HOH HOH . T 6 HOH H 29 429 104 HOH HOH . U 6 HOH L 1 401 11 HOH HOH . U 6 HOH L 2 402 122 HOH HOH . U 6 HOH L 3 403 34 HOH HOH . U 6 HOH L 4 404 10 HOH HOH . U 6 HOH L 5 405 38 HOH HOH . U 6 HOH L 6 406 18 HOH HOH . U 6 HOH L 7 407 31 HOH HOH . U 6 HOH L 8 408 39 HOH HOH . U 6 HOH L 9 409 63 HOH HOH . U 6 HOH L 10 410 2 HOH HOH . U 6 HOH L 11 411 37 HOH HOH . U 6 HOH L 12 412 87 HOH HOH . U 6 HOH L 13 413 94 HOH HOH . U 6 HOH L 14 414 53 HOH HOH . U 6 HOH L 15 415 33 HOH HOH . U 6 HOH L 16 416 96 HOH HOH . U 6 HOH L 17 417 30 HOH HOH . U 6 HOH L 18 418 36 HOH HOH . U 6 HOH L 19 419 113 HOH HOH . U 6 HOH L 20 420 7 HOH HOH . U 6 HOH L 21 421 78 HOH HOH . U 6 HOH L 22 422 24 HOH HOH . U 6 HOH L 23 423 48 HOH HOH . U 6 HOH L 24 424 40 HOH HOH . U 6 HOH L 25 425 65 HOH HOH . U 6 HOH L 26 426 23 HOH HOH . U 6 HOH L 27 427 60 HOH HOH . U 6 HOH L 28 428 74 HOH HOH . U 6 HOH L 29 429 3 HOH HOH . U 6 HOH L 30 430 120 HOH HOH . U 6 HOH L 31 431 54 HOH HOH . U 6 HOH L 32 432 68 HOH HOH . U 6 HOH L 33 433 41 HOH HOH . U 6 HOH L 34 434 55 HOH HOH . U 6 HOH L 35 435 134 HOH HOH . U 6 HOH L 36 436 121 HOH HOH . U 6 HOH L 37 437 132 HOH HOH . U 6 HOH L 38 438 136 HOH HOH . U 6 HOH L 39 439 75 HOH HOH . U 6 HOH L 40 440 125 HOH HOH . U 6 HOH L 41 441 117 HOH HOH . U 6 HOH L 42 442 42 HOH HOH . V 6 HOH E 1 401 77 HOH HOH . V 6 HOH E 2 402 51 HOH HOH . V 6 HOH E 3 403 47 HOH HOH . V 6 HOH E 4 404 5 HOH HOH . V 6 HOH E 5 405 71 HOH HOH . V 6 HOH E 6 406 21 HOH HOH . V 6 HOH E 7 407 111 HOH HOH . V 6 HOH E 8 408 61 HOH HOH . V 6 HOH E 9 409 50 HOH HOH . V 6 HOH E 10 410 35 HOH HOH . V 6 HOH E 11 411 79 HOH HOH . V 6 HOH E 12 412 20 HOH HOH . V 6 HOH E 13 413 90 HOH HOH . V 6 HOH E 14 414 56 HOH HOH . V 6 HOH E 15 415 59 HOH HOH . V 6 HOH E 16 416 9 HOH HOH . V 6 HOH E 17 417 73 HOH HOH . V 6 HOH E 18 418 46 HOH HOH . V 6 HOH E 19 419 57 HOH HOH . V 6 HOH E 20 420 99 HOH HOH . V 6 HOH E 21 421 115 HOH HOH . V 6 HOH E 22 422 17 HOH HOH . V 6 HOH E 23 423 110 HOH HOH . V 6 HOH E 24 424 129 HOH HOH . V 6 HOH E 25 425 95 HOH HOH . V 6 HOH E 26 426 119 HOH HOH . W 6 HOH I 1 401 6 HOH HOH . W 6 HOH I 2 402 26 HOH HOH . W 6 HOH I 3 403 8 HOH HOH . W 6 HOH I 4 404 28 HOH HOH . W 6 HOH I 5 405 109 HOH HOH . W 6 HOH I 6 406 27 HOH HOH . W 6 HOH I 7 407 45 HOH HOH . W 6 HOH I 8 408 69 HOH HOH . W 6 HOH I 9 409 1 HOH HOH . W 6 HOH I 10 410 83 HOH HOH . W 6 HOH I 11 411 15 HOH HOH . W 6 HOH I 12 412 52 HOH HOH . W 6 HOH I 13 413 86 HOH HOH . W 6 HOH I 14 414 123 HOH HOH . W 6 HOH I 15 415 88 HOH HOH . W 6 HOH I 16 416 62 HOH HOH . W 6 HOH I 17 417 32 HOH HOH . W 6 HOH I 18 418 116 HOH HOH . W 6 HOH I 19 419 92 HOH HOH . W 6 HOH I 20 420 80 HOH HOH . W 6 HOH I 21 421 43 HOH HOH . W 6 HOH I 22 422 97 HOH HOH . W 6 HOH I 23 423 64 HOH HOH . W 6 HOH I 24 424 133 HOH HOH . W 6 HOH I 25 425 112 HOH HOH . W 6 HOH I 26 426 29 HOH HOH . W 6 HOH I 27 427 108 HOH HOH . W 6 HOH I 28 428 70 HOH HOH . W 6 HOH I 29 429 76 HOH HOH . W 6 HOH I 30 430 85 HOH HOH . W 6 HOH I 31 431 66 HOH HOH . W 6 HOH I 32 432 72 HOH HOH . W 6 HOH I 33 433 128 HOH HOH . W 6 HOH I 34 434 124 HOH HOH . W 6 HOH I 35 435 135 HOH HOH . W 6 HOH I 36 436 107 HOH HOH . W 6 HOH I 37 437 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . L 3 33.626 36.579 87.807 1 129.04 ? S SO4 306 L 1 HETATM 2 O O1 SO4 . . . L 3 34.45 36.782 86.616 1 127.38 ? O1 SO4 306 L 1 HETATM 3 O O2 SO4 . . . L 3 32.243 36.297 87.426 1 129.4 ? O2 SO4 306 L 1 HETATM 4 O O3 SO4 . . . L 3 34.146 35.446 88.569 1 129.45 ? O3 SO4 306 L 1 HETATM 5 O O4 SO4 . . . L 3 33.666 37.791 88.622 1 127.17 ? O4 SO4 306 L 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #