data_5W06
#
_model_server_result.job_id            Mc4aiqDef7zNZwclePLNJg 
_model_server_result.datetime_utc      '2025-02-05 18:05:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    5W06 
#
_exptl.entry_id    5W06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5W06 
_cell.length_a            68.1 
_cell.length_b            175.56 
_cell.length_c            63.31 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 45 T CYS 49 1_555 A SG CYS 53 T CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 182 T CYS 186 1_555 A SG CYS 205 T CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 B SG CYS 140 L CYS 140 1_555 B SG CYS 200 L CYS 200 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 147 H CYS 147 1_555 C SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5W06 
_atom_sites.fract_transf_matrix[1][1]    0.014684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005696 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015795 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL L 1 901 901 GOL GOL . 
E 5 HOH T 1 301 89 HOH HOH . 
E 5 HOH T 2 302 15 HOH HOH . 
E 5 HOH T 3 303 29 HOH HOH . 
E 5 HOH T 4 304 45 HOH HOH . 
E 5 HOH T 5 305 99 HOH HOH . 
E 5 HOH T 6 306 61 HOH HOH . 
E 5 HOH T 7 307 4 HOH HOH . 
E 5 HOH T 8 308 100 HOH HOH . 
E 5 HOH T 9 309 58 HOH HOH . 
E 5 HOH T 10 310 21 HOH HOH . 
E 5 HOH T 11 311 3 HOH HOH . 
E 5 HOH T 12 312 16 HOH HOH . 
E 5 HOH T 13 313 92 HOH HOH . 
E 5 HOH T 14 314 94 HOH HOH . 
E 5 HOH T 15 315 8 HOH HOH . 
E 5 HOH T 16 316 6 HOH HOH . 
E 5 HOH T 17 317 43 HOH HOH . 
E 5 HOH T 18 318 78 HOH HOH . 
E 5 HOH T 19 319 72 HOH HOH . 
E 5 HOH T 20 320 88 HOH HOH . 
E 5 HOH T 21 321 63 HOH HOH . 
E 5 HOH T 22 322 54 HOH HOH . 
E 5 HOH T 23 323 67 HOH HOH . 
E 5 HOH T 24 324 40 HOH HOH . 
E 5 HOH T 25 325 84 HOH HOH . 
E 5 HOH T 26 326 46 HOH HOH . 
E 5 HOH T 27 327 31 HOH HOH . 
E 5 HOH T 28 328 37 HOH HOH . 
F 5 HOH L 1 1001 93 HOH HOH . 
F 5 HOH L 2 1002 49 HOH HOH . 
F 5 HOH L 3 1003 1 HOH HOH . 
F 5 HOH L 4 1004 25 HOH HOH . 
F 5 HOH L 5 1005 98 HOH HOH . 
F 5 HOH L 6 1006 38 HOH HOH . 
F 5 HOH L 7 1007 20 HOH HOH . 
F 5 HOH L 8 1008 73 HOH HOH . 
F 5 HOH L 9 1009 66 HOH HOH . 
F 5 HOH L 10 1010 56 HOH HOH . 
F 5 HOH L 11 1011 55 HOH HOH . 
F 5 HOH L 12 1012 91 HOH HOH . 
F 5 HOH L 13 1013 68 HOH HOH . 
F 5 HOH L 14 1014 95 HOH HOH . 
F 5 HOH L 15 1015 22 HOH HOH . 
F 5 HOH L 16 1016 33 HOH HOH . 
F 5 HOH L 17 1017 23 HOH HOH . 
F 5 HOH L 18 1018 36 HOH HOH . 
F 5 HOH L 19 1019 90 HOH HOH . 
F 5 HOH L 20 1020 102 HOH HOH . 
F 5 HOH L 21 1021 51 HOH HOH . 
F 5 HOH L 22 1022 87 HOH HOH . 
F 5 HOH L 23 1023 35 HOH HOH . 
F 5 HOH L 24 1024 18 HOH HOH . 
F 5 HOH L 25 1025 107 HOH HOH . 
F 5 HOH L 26 1026 74 HOH HOH . 
F 5 HOH L 27 1027 26 HOH HOH . 
F 5 HOH L 28 1028 52 HOH HOH . 
F 5 HOH L 29 1029 57 HOH HOH . 
F 5 HOH L 30 1030 104 HOH HOH . 
F 5 HOH L 31 1031 101 HOH HOH . 
F 5 HOH L 32 1032 83 HOH HOH . 
F 5 HOH L 33 1033 34 HOH HOH . 
F 5 HOH L 34 1034 106 HOH HOH . 
F 5 HOH L 35 1035 11 HOH HOH . 
F 5 HOH L 36 1036 79 HOH HOH . 
G 5 HOH H 1 301 59 HOH HOH . 
G 5 HOH H 2 302 17 HOH HOH . 
G 5 HOH H 3 303 32 HOH HOH . 
G 5 HOH H 4 304 12 HOH HOH . 
G 5 HOH H 5 305 42 HOH HOH . 
G 5 HOH H 6 306 86 HOH HOH . 
G 5 HOH H 7 307 2 HOH HOH . 
G 5 HOH H 8 308 77 HOH HOH . 
G 5 HOH H 9 309 103 HOH HOH . 
G 5 HOH H 10 310 5 HOH HOH . 
G 5 HOH H 11 311 105 HOH HOH . 
G 5 HOH H 12 312 30 HOH HOH . 
G 5 HOH H 13 313 64 HOH HOH . 
G 5 HOH H 14 314 60 HOH HOH . 
G 5 HOH H 15 315 27 HOH HOH . 
G 5 HOH H 16 316 82 HOH HOH . 
G 5 HOH H 17 317 39 HOH HOH . 
G 5 HOH H 18 318 7 HOH HOH . 
G 5 HOH H 19 319 75 HOH HOH . 
G 5 HOH H 20 320 10 HOH HOH . 
G 5 HOH H 21 321 85 HOH HOH . 
G 5 HOH H 22 322 14 HOH HOH . 
G 5 HOH H 23 323 81 HOH HOH . 
G 5 HOH H 24 324 62 HOH HOH . 
G 5 HOH H 25 325 50 HOH HOH . 
G 5 HOH H 26 326 76 HOH HOH . 
G 5 HOH H 27 327 97 HOH HOH . 
G 5 HOH H 28 328 13 HOH HOH . 
G 5 HOH H 29 329 24 HOH HOH . 
G 5 HOH H 30 330 53 HOH HOH . 
G 5 HOH H 31 331 65 HOH HOH . 
G 5 HOH H 32 332 80 HOH HOH . 
G 5 HOH H 33 333 44 HOH HOH . 
G 5 HOH H 34 334 28 HOH HOH . 
G 5 HOH H 35 335 41 HOH HOH . 
G 5 HOH H 36 336 19 HOH HOH . 
G 5 HOH H 37 337 48 HOH HOH . 
G 5 HOH H 38 338 47 HOH HOH . 
G 5 HOH H 39 339 69 HOH HOH . 
G 5 HOH H 40 340 9 HOH HOH . 
G 5 HOH H 41 341 70 HOH HOH . 
G 5 HOH H 42 342 96 HOH HOH . 
G 5 HOH H 43 343 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -14.008 51.836 -25.991 1 44.66 ? C1 GOL 901 L 1 
HETATM 2 O O1 GOL . . . D 4 -13.91 53.179 -26.469 1 43.41 ? O1 GOL 901 L 1 
HETATM 3 C C2 GOL . . . D 4 -13.463 50.916 -27.071 1 47.7 ? C2 GOL 901 L 1 
HETATM 4 O O2 GOL . . . D 4 -14.546 50.423 -27.871 1 52.13 ? O2 GOL 901 L 1 
HETATM 5 C C3 GOL . . . D 4 -12.739 49.761 -26.397 1 51.36 ? C3 GOL 901 L 1 
HETATM 6 O O3 GOL . . . D 4 -11.335 49.876 -26.655 1 52.19 ? O3 GOL 901 L 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           6 
#