data_5W07 # _model_server_result.job_id 18bYfKOiaVoGnuRGfZqvuA _model_server_result.datetime_utc '2024-11-22 00:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 5W07 # _exptl.entry_id 5W07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 460.213 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (~{N}~{E})-~{N}-[[2-[[2-ethylsulfonyl-1,1-bis(oxidanyl)-3,4-dihydro-2,3,1$l^{4}-benzodiazaborinin-7-yl]oxy]-5-(trifluoromethyl)phenyl]methylidene]hydroxylamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W07 _cell.length_a 94.08 _cell.length_b 94.08 _cell.length_c 184.43 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H18 B F3 N3 O6 S' _chem_comp.formula_weight 460.213 _chem_comp.id 9JA _chem_comp.mon_nstd_flag . _chem_comp.name (~{N}~{E})-~{N}-[[2-[[2-ethylsulfonyl-1,1-bis(oxidanyl)-3,4-dihydro-2,3,1$l^{4}-benzodiazaborinin-7-yl]oxy]-5-(trifluoromethyl)phenyl]methylidene]hydroxylamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 S05 9JA doub 1 n n N10 C11 9JA sing 2 n n N10 N04 9JA sing 3 n n C08 C07 9JA sing 4 n n S05 C07 9JA sing 5 n n S05 N04 9JA sing 6 n n S05 O09 9JA doub 7 n n C11 C12 9JA sing 8 n n N04 B02 9JA sing 9 n n C12 C13 9JA doub 10 n y C12 C31 9JA sing 11 n y B02 O01 9JA sing 12 n n B02 C31 9JA sing 13 n n B02 O03 9JA sing 14 n n C13 C14 9JA sing 15 n y C31 C30 9JA doub 16 n y C14 C15 9JA doub 17 n y C30 C15 9JA sing 18 n y C15 O16 9JA sing 19 n n C29 C28 9JA doub 20 n y C29 C17 9JA sing 21 n y C28 C23 9JA sing 22 n y O16 C17 9JA sing 23 n n C17 C18 9JA doub 24 n y F26 C24 9JA sing 25 n n C23 C24 9JA sing 26 n n C23 C22 9JA doub 27 n y C18 C22 9JA sing 28 n y C18 C19 9JA sing 29 n n C24 F27 9JA sing 30 n n C24 F25 9JA sing 31 n n C19 N20 9JA doub 32 e n N20 O21 9JA sing 33 n n C14 H1 9JA sing 34 n n C13 H2 9JA sing 35 n n C19 H3 9JA sing 36 n n C22 H4 9JA sing 37 n n O01 H5 9JA sing 38 n n O03 H6 9JA sing 39 n n C07 H7 9JA sing 40 n n C07 H8 9JA sing 41 n n C08 H9 9JA sing 42 n n C08 H10 9JA sing 43 n n C08 H11 9JA sing 44 n n N10 H12 9JA sing 45 n n C11 H13 9JA sing 46 n n C11 H14 9JA sing 47 n n O21 H15 9JA sing 48 n n C28 H16 9JA sing 49 n n C29 H17 9JA sing 50 n n C30 H18 9JA sing 51 n n # _atom_sites.entry_id 5W07 _atom_sites.fract_transf_matrix[1][1] 0.010629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9JA A 1 300 300 9JA 855 . C 3 HOH A 1 401 20 HOH HOH . C 3 HOH A 2 402 9 HOH HOH . C 3 HOH A 3 403 15 HOH HOH . C 3 HOH A 4 404 29 HOH HOH . C 3 HOH A 5 405 11 HOH HOH . C 3 HOH A 6 406 25 HOH HOH . C 3 HOH A 7 407 14 HOH HOH . C 3 HOH A 8 408 21 HOH HOH . C 3 HOH A 9 409 28 HOH HOH . C 3 HOH A 10 410 8 HOH HOH . C 3 HOH A 11 411 10 HOH HOH . C 3 HOH A 12 412 24 HOH HOH . C 3 HOH A 13 413 5 HOH HOH . C 3 HOH A 14 414 23 HOH HOH . C 3 HOH A 15 415 13 HOH HOH . C 3 HOH A 16 416 22 HOH HOH . C 3 HOH A 17 417 4 HOH HOH . C 3 HOH A 18 418 30 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 12 HOH HOH . C 3 HOH A 21 421 7 HOH HOH . C 3 HOH A 22 422 18 HOH HOH . C 3 HOH A 23 423 16 HOH HOH . C 3 HOH A 24 424 6 HOH HOH . C 3 HOH A 25 425 27 HOH HOH . C 3 HOH A 26 426 3 HOH HOH . C 3 HOH A 27 427 2 HOH HOH . C 3 HOH A 28 428 26 HOH HOH . C 3 HOH A 29 429 1 HOH HOH . C 3 HOH A 30 430 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 9JA . . . B 2 -1.176 17.289 10.233 1 40.8 ? C12 9JA 300 A 1 HETATM 2 C C17 9JA . . . B 2 -1.856 15.176 14.696 1 40.76 ? C17 9JA 300 A 1 HETATM 3 C C14 9JA . . . B 2 -0.096 16.006 11.999 1 43.28 ? C14 9JA 300 A 1 HETATM 4 C C13 9JA . . . B 2 -0.168 16.371 10.655 1 38.72 ? C13 9JA 300 A 1 HETATM 5 C C18 9JA . . . B 2 -1.962 14.923 16.061 1 45.2 ? C18 9JA 300 A 1 HETATM 6 C C19 9JA . . . B 2 -1.05 15.669 17.017 1 47.39 ? C19 9JA 300 A 1 HETATM 7 C C22 9JA . . . B 2 -2.886 14.001 16.535 1 40.94 ? C22 9JA 300 A 1 HETATM 8 C C23 9JA . . . B 2 -3.708 13.336 15.63 1 43.01 ? C23 9JA 300 A 1 HETATM 9 O O01 9JA . . . B 2 -4.748 18.184 10.77 1 33.95 ? O01 9JA 300 A 1 HETATM 10 B B02 9JA . . . B 2 -3.232 18.862 10.625 1 54.74 ? B02 9JA 300 A 1 HETATM 11 O O03 9JA . . . B 2 -3.203 20.206 11.613 1 64.7 ? O03 9JA 300 A 1 HETATM 12 N N04 9JA . . . B 2 -3.012 19.297 9.186 1 58.07 ? N04 9JA 300 A 1 HETATM 13 S S05 9JA . . . B 2 -3.623 20.737 8.674 1 66.42 ? S05 9JA 300 A 1 HETATM 14 O O06 9JA . . . B 2 -3.94 20.662 7.268 1 66.61 ? O06 9JA 300 A 1 HETATM 15 C C07 9JA . . . B 2 -2.461 22.036 9.027 1 52.02 ? C07 9JA 300 A 1 HETATM 16 C C08 9JA . . . B 2 -1.099 21.639 8.51 1 51.78 ? C08 9JA 300 A 1 HETATM 17 O O09 9JA . . . B 2 -4.901 20.976 9.28 1 75.98 ? O09 9JA 300 A 1 HETATM 18 N N10 9JA . . . B 2 -2.297 18.517 8.281 1 53.18 ? N10 9JA 300 A 1 HETATM 19 C C11 9JA . . . B 2 -1.23 17.669 8.744 1 44.26 ? C11 9JA 300 A 1 HETATM 20 C C15 9JA . . . B 2 -1.006 16.522 12.923 1 42.57 ? C15 9JA 300 A 1 HETATM 21 O O16 9JA . . . B 2 -0.888 16.135 14.29 1 41.61 ? O16 9JA 300 A 1 HETATM 22 N N20 9JA . . . B 2 -0.919 15.243 18.258 1 49.23 ? N20 9JA 300 A 1 HETATM 23 O O21 9JA . . . B 2 -0.09 15.918 19.123 1 60.15 ? O21 9JA 300 A 1 HETATM 24 C C24 9JA . . . B 2 -4.736 12.313 16.118 1 50.13 ? C24 9JA 300 A 1 HETATM 25 F F25 9JA . . . B 2 -4.271 11.693 17.217 1 48.7 ? F25 9JA 300 A 1 HETATM 26 F F26 9JA . . . B 2 -4.946 11.413 15.148 1 58.2 ? F26 9JA 300 A 1 HETATM 27 F F27 9JA . . . B 2 -5.882 12.95 16.402 1 49.6 ? F27 9JA 300 A 1 HETATM 28 C C28 9JA . . . B 2 -3.601 13.589 14.266 1 40.27 ? C28 9JA 300 A 1 HETATM 29 C C29 9JA . . . B 2 -2.672 14.509 13.79 1 37.9 ? C29 9JA 300 A 1 HETATM 30 C C30 9JA . . . B 2 -1.993 17.425 12.51 1 39.03 ? C30 9JA 300 A 1 HETATM 31 C C31 9JA . . . B 2 -2.071 17.8 11.127 1 40.6 ? C31 9JA 300 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #