data_5W0C
#
_model_server_result.job_id            s-lkXF4nBRW_WR4OeD7oLQ 
_model_server_result.datetime_utc      '2024-11-23 07:47:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w0c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5W0C 
#
_exptl.entry_id    5W0C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5W0C 
_cell.length_a            91.394 
_cell.length_b            91.394 
_cell.length_c            169.225 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W0C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 418 A CYS 435 1_555 B FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc2 B FE HEM . A HEM 500 1_555 E O HOH . A HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 168 n n 
C1 C2 GOL sing 169 n n 
C1 H11 GOL sing 170 n n 
C1 H12 GOL sing 171 n n 
O1 HO1 GOL sing 172 n n 
C2 O2 GOL sing 173 n n 
C2 C3 GOL sing 174 n n 
C2 H2 GOL sing 175 n n 
O2 HO2 GOL sing 176 n n 
C3 O3 GOL sing 177 n n 
C3 H31 GOL sing 178 n n 
C3 H32 GOL sing 179 n n 
O3 HO3 GOL sing 180 n n 
#
_atom_sites.entry_id                     5W0C 
_atom_sites.fract_transf_matrix[1][1]    0.010942 
_atom_sites.fract_transf_matrix[1][2]    0.006317 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012634 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005909 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 500 500 HEM HEM . 
C 3 9W6 A 1 501 501 9W6 9W6 . 
D 4 GOL A 1 502 502 GOL GOL . 
E 5 HOH A 1 601 662 HOH HOH . 
E 5 HOH A 2 602 613 HOH HOH . 
E 5 HOH A 3 603 778 HOH HOH . 
E 5 HOH A 4 604 692 HOH HOH . 
E 5 HOH A 5 605 664 HOH HOH . 
E 5 HOH A 6 606 652 HOH HOH . 
E 5 HOH A 7 607 749 HOH HOH . 
E 5 HOH A 8 608 687 HOH HOH . 
E 5 HOH A 9 609 777 HOH HOH . 
E 5 HOH A 10 610 745 HOH HOH . 
E 5 HOH A 11 611 717 HOH HOH . 
E 5 HOH A 12 612 666 HOH HOH . 
E 5 HOH A 13 613 739 HOH HOH . 
E 5 HOH A 14 614 682 HOH HOH . 
E 5 HOH A 15 615 741 HOH HOH . 
E 5 HOH A 16 616 701 HOH HOH . 
E 5 HOH A 17 617 738 HOH HOH . 
E 5 HOH A 18 618 698 HOH HOH . 
E 5 HOH A 19 619 669 HOH HOH . 
E 5 HOH A 20 620 671 HOH HOH . 
E 5 HOH A 21 621 660 HOH HOH . 
E 5 HOH A 22 622 659 HOH HOH . 
E 5 HOH A 23 623 759 HOH HOH . 
E 5 HOH A 24 624 675 HOH HOH . 
E 5 HOH A 25 625 791 HOH HOH . 
E 5 HOH A 26 626 670 HOH HOH . 
E 5 HOH A 27 627 693 HOH HOH . 
E 5 HOH A 28 628 620 HOH HOH . 
E 5 HOH A 29 629 616 HOH HOH . 
E 5 HOH A 30 630 723 HOH HOH . 
E 5 HOH A 31 631 637 HOH HOH . 
E 5 HOH A 32 632 658 HOH HOH . 
E 5 HOH A 33 633 761 HOH HOH . 
E 5 HOH A 34 634 770 HOH HOH . 
E 5 HOH A 35 635 712 HOH HOH . 
E 5 HOH A 36 636 609 HOH HOH . 
E 5 HOH A 37 637 720 HOH HOH . 
E 5 HOH A 38 638 740 HOH HOH . 
E 5 HOH A 39 639 713 HOH HOH . 
E 5 HOH A 40 640 610 HOH HOH . 
E 5 HOH A 41 641 623 HOH HOH . 
E 5 HOH A 42 642 819 HOH HOH . 
E 5 HOH A 43 643 651 HOH HOH . 
E 5 HOH A 44 644 665 HOH HOH . 
E 5 HOH A 45 645 667 HOH HOH . 
E 5 HOH A 46 646 726 HOH HOH . 
E 5 HOH A 47 647 633 HOH HOH . 
E 5 HOH A 48 648 617 HOH HOH . 
E 5 HOH A 49 649 767 HOH HOH . 
E 5 HOH A 50 650 612 HOH HOH . 
E 5 HOH A 51 651 653 HOH HOH . 
E 5 HOH A 52 652 646 HOH HOH . 
E 5 HOH A 53 653 608 HOH HOH . 
E 5 HOH A 54 654 622 HOH HOH . 
E 5 HOH A 55 655 606 HOH HOH . 
E 5 HOH A 56 656 821 HOH HOH . 
E 5 HOH A 57 657 727 HOH HOH . 
E 5 HOH A 58 658 696 HOH HOH . 
E 5 HOH A 59 659 630 HOH HOH . 
E 5 HOH A 60 660 773 HOH HOH . 
E 5 HOH A 61 661 638 HOH HOH . 
E 5 HOH A 62 662 674 HOH HOH . 
E 5 HOH A 63 663 753 HOH HOH . 
E 5 HOH A 64 664 650 HOH HOH . 
E 5 HOH A 65 665 702 HOH HOH . 
E 5 HOH A 66 666 615 HOH HOH . 
E 5 HOH A 67 667 699 HOH HOH . 
E 5 HOH A 68 668 678 HOH HOH . 
E 5 HOH A 69 669 690 HOH HOH . 
E 5 HOH A 70 670 752 HOH HOH . 
E 5 HOH A 71 671 736 HOH HOH . 
E 5 HOH A 72 672 721 HOH HOH . 
E 5 HOH A 73 673 700 HOH HOH . 
E 5 HOH A 74 674 763 HOH HOH . 
E 5 HOH A 75 675 715 HOH HOH . 
E 5 HOH A 76 676 804 HOH HOH . 
E 5 HOH A 77 677 805 HOH HOH . 
E 5 HOH A 78 678 631 HOH HOH . 
E 5 HOH A 79 679 711 HOH HOH . 
E 5 HOH A 80 680 624 HOH HOH . 
E 5 HOH A 81 681 772 HOH HOH . 
E 5 HOH A 82 682 648 HOH HOH . 
E 5 HOH A 83 683 695 HOH HOH . 
E 5 HOH A 84 684 685 HOH HOH . 
E 5 HOH A 85 685 765 HOH HOH . 
E 5 HOH A 86 686 627 HOH HOH . 
E 5 HOH A 87 687 768 HOH HOH . 
E 5 HOH A 88 688 643 HOH HOH . 
E 5 HOH A 89 689 754 HOH HOH . 
E 5 HOH A 90 690 799 HOH HOH . 
E 5 HOH A 91 691 603 HOH HOH . 
E 5 HOH A 92 692 789 HOH HOH . 
E 5 HOH A 93 693 743 HOH HOH . 
E 5 HOH A 94 694 784 HOH HOH . 
E 5 HOH A 95 695 601 HOH HOH . 
E 5 HOH A 96 696 668 HOH HOH . 
E 5 HOH A 97 697 719 HOH HOH . 
E 5 HOH A 98 698 625 HOH HOH . 
E 5 HOH A 99 699 823 HOH HOH . 
E 5 HOH A 100 700 655 HOH HOH . 
E 5 HOH A 101 701 697 HOH HOH . 
E 5 HOH A 102 702 689 HOH HOH . 
E 5 HOH A 103 703 611 HOH HOH . 
E 5 HOH A 104 704 619 HOH HOH . 
E 5 HOH A 105 705 663 HOH HOH . 
E 5 HOH A 106 706 684 HOH HOH . 
E 5 HOH A 107 707 769 HOH HOH . 
E 5 HOH A 108 708 686 HOH HOH . 
E 5 HOH A 109 709 822 HOH HOH . 
E 5 HOH A 110 710 621 HOH HOH . 
E 5 HOH A 111 711 781 HOH HOH . 
E 5 HOH A 112 712 602 HOH HOH . 
E 5 HOH A 113 713 790 HOH HOH . 
E 5 HOH A 114 714 604 HOH HOH . 
E 5 HOH A 115 715 792 HOH HOH . 
E 5 HOH A 116 716 607 HOH HOH . 
E 5 HOH A 117 717 644 HOH HOH . 
E 5 HOH A 118 718 632 HOH HOH . 
E 5 HOH A 119 719 756 HOH HOH . 
E 5 HOH A 120 720 807 HOH HOH . 
E 5 HOH A 121 721 795 HOH HOH . 
E 5 HOH A 122 722 728 HOH HOH . 
E 5 HOH A 123 723 710 HOH HOH . 
E 5 HOH A 124 724 764 HOH HOH . 
E 5 HOH A 125 725 691 HOH HOH . 
E 5 HOH A 126 726 755 HOH HOH . 
E 5 HOH A 127 727 641 HOH HOH . 
E 5 HOH A 128 728 676 HOH HOH . 
E 5 HOH A 129 729 813 HOH HOH . 
E 5 HOH A 130 730 780 HOH HOH . 
E 5 HOH A 131 731 704 HOH HOH . 
E 5 HOH A 132 732 746 HOH HOH . 
E 5 HOH A 133 733 775 HOH HOH . 
E 5 HOH A 134 734 680 HOH HOH . 
E 5 HOH A 135 735 661 HOH HOH . 
E 5 HOH A 136 736 733 HOH HOH . 
E 5 HOH A 137 737 732 HOH HOH . 
E 5 HOH A 138 738 731 HOH HOH . 
E 5 HOH A 139 739 832 HOH HOH . 
E 5 HOH A 140 740 640 HOH HOH . 
E 5 HOH A 141 741 730 HOH HOH . 
E 5 HOH A 142 742 694 HOH HOH . 
E 5 HOH A 143 743 649 HOH HOH . 
E 5 HOH A 144 744 751 HOH HOH . 
E 5 HOH A 145 745 679 HOH HOH . 
E 5 HOH A 146 746 796 HOH HOH . 
E 5 HOH A 147 747 814 HOH HOH . 
E 5 HOH A 148 748 729 HOH HOH . 
E 5 HOH A 149 749 688 HOH HOH . 
E 5 HOH A 150 750 735 HOH HOH . 
E 5 HOH A 151 751 771 HOH HOH . 
E 5 HOH A 152 752 683 HOH HOH . 
E 5 HOH A 153 753 815 HOH HOH . 
E 5 HOH A 154 754 618 HOH HOH . 
E 5 HOH A 155 755 605 HOH HOH . 
E 5 HOH A 156 756 725 HOH HOH . 
E 5 HOH A 157 757 636 HOH HOH . 
E 5 HOH A 158 758 802 HOH HOH . 
E 5 HOH A 159 759 681 HOH HOH . 
E 5 HOH A 160 760 614 HOH HOH . 
E 5 HOH A 161 761 635 HOH HOH . 
E 5 HOH A 162 762 677 HOH HOH . 
E 5 HOH A 163 763 776 HOH HOH . 
E 5 HOH A 164 764 779 HOH HOH . 
E 5 HOH A 165 765 797 HOH HOH . 
E 5 HOH A 166 766 709 HOH HOH . 
E 5 HOH A 167 767 766 HOH HOH . 
E 5 HOH A 168 768 657 HOH HOH . 
E 5 HOH A 169 769 654 HOH HOH . 
E 5 HOH A 170 770 642 HOH HOH . 
E 5 HOH A 171 771 645 HOH HOH . 
E 5 HOH A 172 772 628 HOH HOH . 
E 5 HOH A 173 773 748 HOH HOH . 
E 5 HOH A 174 774 647 HOH HOH . 
E 5 HOH A 175 775 718 HOH HOH . 
E 5 HOH A 176 776 734 HOH HOH . 
E 5 HOH A 177 777 634 HOH HOH . 
E 5 HOH A 178 778 673 HOH HOH . 
E 5 HOH A 179 779 724 HOH HOH . 
E 5 HOH A 180 780 803 HOH HOH . 
E 5 HOH A 181 781 629 HOH HOH . 
E 5 HOH A 182 782 758 HOH HOH . 
E 5 HOH A 183 783 783 HOH HOH . 
E 5 HOH A 184 784 672 HOH HOH . 
E 5 HOH A 185 785 714 HOH HOH . 
E 5 HOH A 186 786 757 HOH HOH . 
E 5 HOH A 187 787 828 HOH HOH . 
E 5 HOH A 188 788 716 HOH HOH . 
E 5 HOH A 189 790 747 HOH HOH . 
E 5 HOH A 190 791 787 HOH HOH . 
E 5 HOH A 191 792 834 HOH HOH . 
E 5 HOH A 192 793 833 HOH HOH . 
E 5 HOH A 193 794 708 HOH HOH . 
E 5 HOH A 194 795 788 HOH HOH . 
E 5 HOH A 195 796 820 HOH HOH . 
E 5 HOH A 196 798 760 HOH HOH . 
E 5 HOH A 197 799 785 HOH HOH . 
E 5 HOH A 198 800 811 HOH HOH . 
E 5 HOH A 199 801 706 HOH HOH . 
E 5 HOH A 200 802 750 HOH HOH . 
E 5 HOH A 201 803 774 HOH HOH . 
E 5 HOH A 202 804 812 HOH HOH . 
E 5 HOH A 203 805 793 HOH HOH . 
E 5 HOH A 204 806 703 HOH HOH . 
E 5 HOH A 205 807 744 HOH HOH . 
E 5 HOH A 206 808 742 HOH HOH . 
E 5 HOH A 207 809 830 HOH HOH . 
E 5 HOH A 208 810 800 HOH HOH . 
E 5 HOH A 209 811 722 HOH HOH . 
E 5 HOH A 210 812 818 HOH HOH . 
E 5 HOH A 211 813 786 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -31.963 74.3 0.7 1 44.41 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . D 4 -32.12 75.102 -0.452 1 47.91 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . D 4 -31.033 73.116 0.426 1 46.98 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . D 4 -29.892 73.454 -0.358 1 47.75 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . D 4 -30.604 72.515 1.756 1 43.18 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . D 4 -29.879 71.32 1.535 1 44.27 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#