data_5W0I # _model_server_result.job_id RdN8NLJBFuOw3Stgi9dviw _model_server_result.datetime_utc '2024-10-20 00:55:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 5W0I # _exptl.entry_id 5W0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W0I _cell.length_a 34.879 _cell.length_b 48.602 _cell.length_c 80.763 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 154 n n S C1 DMS sing 155 n n S C2 DMS sing 156 n n C1 H11 DMS sing 157 n n C1 H12 DMS sing 158 n n C1 H13 DMS sing 159 n n C2 H21 DMS sing 160 n n C2 H22 DMS sing 161 n n C2 H23 DMS sing 162 n n # _atom_sites.entry_id 5W0I _atom_sites.fract_transf_matrix[1][1] 0.028671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9UA A 1 1201 1 9UA DRG . C 3 DMS A 1 1202 1 DMS DMS . D 3 DMS A 1 1203 2 DMS DMS . E 4 GOL A 1 1204 3 GOL GOL . F 5 HOH A 1 1301 143 HOH HOH . F 5 HOH A 2 1302 145 HOH HOH . F 5 HOH A 3 1303 64 HOH HOH . F 5 HOH A 4 1304 139 HOH HOH . F 5 HOH A 5 1305 85 HOH HOH . F 5 HOH A 6 1306 68 HOH HOH . F 5 HOH A 7 1307 123 HOH HOH . F 5 HOH A 8 1308 125 HOH HOH . F 5 HOH A 9 1309 119 HOH HOH . F 5 HOH A 10 1310 80 HOH HOH . F 5 HOH A 11 1311 82 HOH HOH . F 5 HOH A 12 1312 97 HOH HOH . F 5 HOH A 13 1313 1 HOH HOH . F 5 HOH A 14 1314 41 HOH HOH . F 5 HOH A 15 1315 87 HOH HOH . F 5 HOH A 16 1316 141 HOH HOH . F 5 HOH A 17 1317 60 HOH HOH . F 5 HOH A 18 1318 40 HOH HOH . F 5 HOH A 19 1319 58 HOH HOH . F 5 HOH A 20 1320 54 HOH HOH . F 5 HOH A 21 1321 19 HOH HOH . F 5 HOH A 22 1322 3 HOH HOH . F 5 HOH A 23 1323 132 HOH HOH . F 5 HOH A 24 1324 140 HOH HOH . F 5 HOH A 25 1325 34 HOH HOH . F 5 HOH A 26 1326 38 HOH HOH . F 5 HOH A 27 1327 6 HOH HOH . F 5 HOH A 28 1328 93 HOH HOH . F 5 HOH A 29 1329 4 HOH HOH . F 5 HOH A 30 1330 24 HOH HOH . F 5 HOH A 31 1331 137 HOH HOH . F 5 HOH A 32 1332 99 HOH HOH . F 5 HOH A 33 1333 20 HOH HOH . F 5 HOH A 34 1334 74 HOH HOH . F 5 HOH A 35 1335 8 HOH HOH . F 5 HOH A 36 1336 42 HOH HOH . F 5 HOH A 37 1337 70 HOH HOH . F 5 HOH A 38 1338 9 HOH HOH . F 5 HOH A 39 1339 59 HOH HOH . F 5 HOH A 40 1340 61 HOH HOH . F 5 HOH A 41 1341 25 HOH HOH . F 5 HOH A 42 1342 13 HOH HOH . F 5 HOH A 43 1343 33 HOH HOH . F 5 HOH A 44 1344 21 HOH HOH . F 5 HOH A 45 1345 17 HOH HOH . F 5 HOH A 46 1346 78 HOH HOH . F 5 HOH A 47 1347 75 HOH HOH . F 5 HOH A 48 1348 18 HOH HOH . F 5 HOH A 49 1349 55 HOH HOH . F 5 HOH A 50 1350 37 HOH HOH . F 5 HOH A 51 1351 14 HOH HOH . F 5 HOH A 52 1352 111 HOH HOH . F 5 HOH A 53 1353 56 HOH HOH . F 5 HOH A 54 1354 44 HOH HOH . F 5 HOH A 55 1355 126 HOH HOH . F 5 HOH A 56 1356 135 HOH HOH . F 5 HOH A 57 1357 16 HOH HOH . F 5 HOH A 58 1358 134 HOH HOH . F 5 HOH A 59 1359 11 HOH HOH . F 5 HOH A 60 1360 32 HOH HOH . F 5 HOH A 61 1361 7 HOH HOH . F 5 HOH A 62 1362 27 HOH HOH . F 5 HOH A 63 1363 116 HOH HOH . F 5 HOH A 64 1364 36 HOH HOH . F 5 HOH A 65 1365 53 HOH HOH . F 5 HOH A 66 1366 39 HOH HOH . F 5 HOH A 67 1367 67 HOH HOH . F 5 HOH A 68 1368 120 HOH HOH . F 5 HOH A 69 1369 66 HOH HOH . F 5 HOH A 70 1370 10 HOH HOH . F 5 HOH A 71 1371 45 HOH HOH . F 5 HOH A 72 1372 5 HOH HOH . F 5 HOH A 73 1373 50 HOH HOH . F 5 HOH A 74 1374 133 HOH HOH . F 5 HOH A 75 1375 89 HOH HOH . F 5 HOH A 76 1376 49 HOH HOH . F 5 HOH A 77 1377 28 HOH HOH . F 5 HOH A 78 1378 102 HOH HOH . F 5 HOH A 79 1379 31 HOH HOH . F 5 HOH A 80 1380 100 HOH HOH . F 5 HOH A 81 1381 15 HOH HOH . F 5 HOH A 82 1382 22 HOH HOH . F 5 HOH A 83 1383 23 HOH HOH . F 5 HOH A 84 1384 51 HOH HOH . F 5 HOH A 85 1385 109 HOH HOH . F 5 HOH A 86 1386 2 HOH HOH . F 5 HOH A 87 1387 62 HOH HOH . F 5 HOH A 88 1388 108 HOH HOH . F 5 HOH A 89 1389 136 HOH HOH . F 5 HOH A 90 1390 98 HOH HOH . F 5 HOH A 91 1391 43 HOH HOH . F 5 HOH A 92 1392 117 HOH HOH . F 5 HOH A 93 1393 26 HOH HOH . F 5 HOH A 94 1394 73 HOH HOH . F 5 HOH A 95 1395 138 HOH HOH . F 5 HOH A 96 1396 52 HOH HOH . F 5 HOH A 97 1397 110 HOH HOH . F 5 HOH A 98 1398 71 HOH HOH . F 5 HOH A 99 1399 115 HOH HOH . F 5 HOH A 100 1400 12 HOH HOH . F 5 HOH A 101 1401 95 HOH HOH . F 5 HOH A 102 1402 84 HOH HOH . F 5 HOH A 103 1403 104 HOH HOH . F 5 HOH A 104 1404 128 HOH HOH . F 5 HOH A 105 1405 124 HOH HOH . F 5 HOH A 106 1406 77 HOH HOH . F 5 HOH A 107 1407 146 HOH HOH . F 5 HOH A 108 1408 96 HOH HOH . F 5 HOH A 109 1409 88 HOH HOH . F 5 HOH A 110 1410 121 HOH HOH . F 5 HOH A 111 1411 131 HOH HOH . F 5 HOH A 112 1412 144 HOH HOH . F 5 HOH A 113 1413 47 HOH HOH . F 5 HOH A 114 1414 65 HOH HOH . F 5 HOH A 115 1415 122 HOH HOH . F 5 HOH A 116 1416 103 HOH HOH . F 5 HOH A 117 1417 113 HOH HOH . F 5 HOH A 118 1418 142 HOH HOH . F 5 HOH A 119 1419 92 HOH HOH . F 5 HOH A 120 1420 48 HOH HOH . F 5 HOH A 121 1421 76 HOH HOH . F 5 HOH A 122 1422 46 HOH HOH . F 5 HOH A 123 1423 94 HOH HOH . F 5 HOH A 124 1424 69 HOH HOH . F 5 HOH A 125 1425 35 HOH HOH . F 5 HOH A 126 1426 130 HOH HOH . F 5 HOH A 127 1427 91 HOH HOH . F 5 HOH A 128 1428 79 HOH HOH . F 5 HOH A 129 1429 72 HOH HOH . F 5 HOH A 130 1430 105 HOH HOH . F 5 HOH A 131 1431 30 HOH HOH . F 5 HOH A 132 1432 129 HOH HOH . F 5 HOH A 133 1433 29 HOH HOH . F 5 HOH A 134 1434 90 HOH HOH . F 5 HOH A 135 1435 63 HOH HOH . F 5 HOH A 136 1436 127 HOH HOH . F 5 HOH A 137 1437 112 HOH HOH . F 5 HOH A 138 1438 57 HOH HOH . F 5 HOH A 139 1439 106 HOH HOH . F 5 HOH A 140 1440 118 HOH HOH . F 5 HOH A 141 1441 147 HOH HOH . F 5 HOH A 142 1442 107 HOH HOH . F 5 HOH A 143 1443 114 HOH HOH . F 5 HOH A 144 1444 83 HOH HOH . F 5 HOH A 145 1445 101 HOH HOH . F 5 HOH A 146 1446 81 HOH HOH . F 5 HOH A 147 1447 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 0.235 -1.445 9.758 0.9 31.69 ? S DMS 1202 A 1 HETATM 2 O O DMS . . . C 3 0.72 -2.172 8.56 0.9 32.18 ? O DMS 1202 A 1 HETATM 3 C C1 DMS . . . C 3 1.462 -0.716 10.775 0.9 25.88 ? C1 DMS 1202 A 1 HETATM 4 C C2 DMS . . . C 3 -0.767 -0.015 9.407 0.9 34.81 ? C2 DMS 1202 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #