data_5W0M # _model_server_result.job_id 1eZ-8m-ZnbqkE2hv-7SsYA _model_server_result.datetime_utc '2024-12-27 02:04:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1402}' # _entry.id 5W0M # _exptl.entry_id 5W0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W0M _cell.length_a 135.472 _cell.length_b 135.472 _cell.length_c 179.268 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,I,J,Q,T 1 1 B,E,K,L,R,U 2 1 C,F,M,N,O,P,S,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 L N N ? 5 O N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 371 A CYS 1347 1_555 I ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc2 A SG CYS 374 A CYS 1350 1_555 I ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A NE2 HIS 379 A HIS 1355 1_555 I ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc4 A SG CYS 384 A CYS 1360 1_555 I ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 C SG CYS 371 C CYS 1347 1_555 N ZN ZN . C ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc6 C SG CYS 374 C CYS 1350 1_555 N ZN ZN . C ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 C NE2 HIS 379 C HIS 1355 1_555 N ZN ZN . C ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc8 C SG CYS 384 C CYS 1360 1_555 N ZN ZN . C ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W0M _atom_sites.fract_transf_matrix[1][1] 0.007382 _atom_sites.fract_transf_matrix[1][2] 0.004262 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 SO4 A 1 1401 3 SO4 SO4 . H 3 SO4 A 1 1402 4 SO4 SO4 . I 4 ZN A 1 1403 1 ZN ZN . J 5 IOD A 1 1404 2 IOD IOD . K 3 SO4 B 1 1401 1 SO4 SO4 . L 5 IOD B 1 1402 3 IOD IOD . M 3 SO4 C 1 1401 5 SO4 SO4 . N 4 ZN C 1 1402 3 ZN ZN . O 5 IOD C 1 1403 1 IOD IOD . P 5 IOD C 1 1404 4 IOD IOD . Q 6 HOH A 1 1501 26 HOH HOH . Q 6 HOH A 2 1502 80 HOH HOH . Q 6 HOH A 3 1503 58 HOH HOH . Q 6 HOH A 4 1504 160 HOH HOH . Q 6 HOH A 5 1505 32 HOH HOH . Q 6 HOH A 6 1506 106 HOH HOH . Q 6 HOH A 7 1507 99 HOH HOH . Q 6 HOH A 8 1508 202 HOH HOH . Q 6 HOH A 9 1509 241 HOH HOH . Q 6 HOH A 10 1510 71 HOH HOH . Q 6 HOH A 11 1511 114 HOH HOH . Q 6 HOH A 12 1512 129 HOH HOH . Q 6 HOH A 13 1513 79 HOH HOH . Q 6 HOH A 14 1514 98 HOH HOH . Q 6 HOH A 15 1515 102 HOH HOH . Q 6 HOH A 16 1516 75 HOH HOH . Q 6 HOH A 17 1517 47 HOH HOH . Q 6 HOH A 18 1518 125 HOH HOH . Q 6 HOH A 19 1519 42 HOH HOH . Q 6 HOH A 20 1520 83 HOH HOH . Q 6 HOH A 21 1521 165 HOH HOH . Q 6 HOH A 22 1522 39 HOH HOH . Q 6 HOH A 23 1523 37 HOH HOH . Q 6 HOH A 24 1524 68 HOH HOH . Q 6 HOH A 25 1525 94 HOH HOH . Q 6 HOH A 26 1526 73 HOH HOH . Q 6 HOH A 27 1527 237 HOH HOH . Q 6 HOH A 28 1528 38 HOH HOH . Q 6 HOH A 29 1529 118 HOH HOH . Q 6 HOH A 30 1530 8 HOH HOH . Q 6 HOH A 31 1531 168 HOH HOH . Q 6 HOH A 32 1532 115 HOH HOH . Q 6 HOH A 33 1533 195 HOH HOH . Q 6 HOH A 34 1534 77 HOH HOH . Q 6 HOH A 35 1535 110 HOH HOH . Q 6 HOH A 36 1536 74 HOH HOH . Q 6 HOH A 37 1537 155 HOH HOH . Q 6 HOH A 38 1538 21 HOH HOH . Q 6 HOH A 39 1539 196 HOH HOH . Q 6 HOH A 40 1540 11 HOH HOH . Q 6 HOH A 41 1541 184 HOH HOH . Q 6 HOH A 42 1542 84 HOH HOH . Q 6 HOH A 43 1543 22 HOH HOH . Q 6 HOH A 44 1544 19 HOH HOH . Q 6 HOH A 45 1545 78 HOH HOH . Q 6 HOH A 46 1546 64 HOH HOH . Q 6 HOH A 47 1547 76 HOH HOH . Q 6 HOH A 48 1548 67 HOH HOH . Q 6 HOH A 49 1549 138 HOH HOH . Q 6 HOH A 50 1550 246 HOH HOH . Q 6 HOH A 51 1551 124 HOH HOH . Q 6 HOH A 52 1552 183 HOH HOH . Q 6 HOH A 53 1553 134 HOH HOH . Q 6 HOH A 54 1554 146 HOH HOH . Q 6 HOH A 55 1555 207 HOH HOH . Q 6 HOH A 56 1556 33 HOH HOH . Q 6 HOH A 57 1557 211 HOH HOH . Q 6 HOH A 58 1558 205 HOH HOH . Q 6 HOH A 59 1559 224 HOH HOH . Q 6 HOH A 60 1560 228 HOH HOH . Q 6 HOH A 61 1561 140 HOH HOH . R 6 HOH B 1 1501 108 HOH HOH . R 6 HOH B 2 1502 95 HOH HOH . R 6 HOH B 3 1503 25 HOH HOH . R 6 HOH B 4 1504 52 HOH HOH . R 6 HOH B 5 1505 62 HOH HOH . R 6 HOH B 6 1506 86 HOH HOH . R 6 HOH B 7 1507 128 HOH HOH . R 6 HOH B 8 1508 5 HOH HOH . R 6 HOH B 9 1509 107 HOH HOH . R 6 HOH B 10 1510 17 HOH HOH . R 6 HOH B 11 1511 92 HOH HOH . R 6 HOH B 12 1512 208 HOH HOH . R 6 HOH B 13 1513 109 HOH HOH . R 6 HOH B 14 1514 136 HOH HOH . R 6 HOH B 15 1515 87 HOH HOH . R 6 HOH B 16 1516 61 HOH HOH . R 6 HOH B 17 1517 28 HOH HOH . R 6 HOH B 18 1518 261 HOH HOH . R 6 HOH B 19 1519 45 HOH HOH . R 6 HOH B 20 1520 65 HOH HOH . R 6 HOH B 21 1521 54 HOH HOH . R 6 HOH B 22 1522 180 HOH HOH . R 6 HOH B 23 1523 40 HOH HOH . R 6 HOH B 24 1524 217 HOH HOH . R 6 HOH B 25 1525 220 HOH HOH . R 6 HOH B 26 1526 247 HOH HOH . R 6 HOH B 27 1527 239 HOH HOH . R 6 HOH B 28 1528 169 HOH HOH . R 6 HOH B 29 1529 57 HOH HOH . R 6 HOH B 30 1530 13 HOH HOH . R 6 HOH B 31 1531 112 HOH HOH . R 6 HOH B 32 1532 91 HOH HOH . R 6 HOH B 33 1533 81 HOH HOH . R 6 HOH B 34 1534 90 HOH HOH . R 6 HOH B 35 1535 23 HOH HOH . R 6 HOH B 36 1536 199 HOH HOH . R 6 HOH B 37 1537 4 HOH HOH . R 6 HOH B 38 1538 72 HOH HOH . R 6 HOH B 39 1539 60 HOH HOH . R 6 HOH B 40 1540 14 HOH HOH . R 6 HOH B 41 1541 192 HOH HOH . R 6 HOH B 42 1542 69 HOH HOH . R 6 HOH B 43 1543 121 HOH HOH . R 6 HOH B 44 1544 53 HOH HOH . R 6 HOH B 45 1545 88 HOH HOH . R 6 HOH B 46 1546 225 HOH HOH . R 6 HOH B 47 1547 131 HOH HOH . R 6 HOH B 48 1548 43 HOH HOH . S 6 HOH C 1 1501 116 HOH HOH . S 6 HOH C 2 1502 243 HOH HOH . S 6 HOH C 3 1503 15 HOH HOH . S 6 HOH C 4 1504 163 HOH HOH . S 6 HOH C 5 1505 176 HOH HOH . S 6 HOH C 6 1506 289 HOH HOH . S 6 HOH C 7 1507 158 HOH HOH . S 6 HOH C 8 1508 10 HOH HOH . S 6 HOH C 9 1509 161 HOH HOH . S 6 HOH C 10 1510 6 HOH HOH . S 6 HOH C 11 1511 133 HOH HOH . S 6 HOH C 12 1512 29 HOH HOH . S 6 HOH C 13 1513 145 HOH HOH . S 6 HOH C 14 1514 12 HOH HOH . S 6 HOH C 15 1515 63 HOH HOH . S 6 HOH C 16 1516 214 HOH HOH . S 6 HOH C 17 1517 16 HOH HOH . S 6 HOH C 18 1518 59 HOH HOH . S 6 HOH C 19 1519 240 HOH HOH . S 6 HOH C 20 1520 113 HOH HOH . S 6 HOH C 21 1521 258 HOH HOH . S 6 HOH C 22 1522 111 HOH HOH . S 6 HOH C 23 1523 193 HOH HOH . S 6 HOH C 24 1524 122 HOH HOH . S 6 HOH C 25 1525 49 HOH HOH . S 6 HOH C 26 1526 41 HOH HOH . S 6 HOH C 27 1527 3 HOH HOH . S 6 HOH C 28 1528 100 HOH HOH . S 6 HOH C 29 1529 190 HOH HOH . S 6 HOH C 30 1530 104 HOH HOH . S 6 HOH C 31 1531 120 HOH HOH . S 6 HOH C 32 1532 31 HOH HOH . S 6 HOH C 33 1533 167 HOH HOH . S 6 HOH C 34 1534 127 HOH HOH . S 6 HOH C 35 1535 103 HOH HOH . S 6 HOH C 36 1536 126 HOH HOH . S 6 HOH C 37 1537 85 HOH HOH . S 6 HOH C 38 1538 36 HOH HOH . S 6 HOH C 39 1539 20 HOH HOH . S 6 HOH C 40 1540 269 HOH HOH . S 6 HOH C 41 1541 198 HOH HOH . S 6 HOH C 42 1542 236 HOH HOH . S 6 HOH C 43 1543 287 HOH HOH . S 6 HOH C 44 1544 55 HOH HOH . S 6 HOH C 45 1545 178 HOH HOH . S 6 HOH C 46 1546 215 HOH HOH . S 6 HOH C 47 1547 35 HOH HOH . S 6 HOH C 48 1548 50 HOH HOH . S 6 HOH C 49 1549 7 HOH HOH . S 6 HOH C 50 1550 137 HOH HOH . S 6 HOH C 51 1551 44 HOH HOH . S 6 HOH C 52 1552 251 HOH HOH . S 6 HOH C 53 1553 34 HOH HOH . S 6 HOH C 54 1554 2 HOH HOH . S 6 HOH C 55 1555 82 HOH HOH . S 6 HOH C 56 1556 219 HOH HOH . S 6 HOH C 57 1557 143 HOH HOH . S 6 HOH C 58 1558 210 HOH HOH . S 6 HOH C 59 1559 48 HOH HOH . S 6 HOH C 60 1560 135 HOH HOH . S 6 HOH C 61 1561 9 HOH HOH . S 6 HOH C 62 1562 46 HOH HOH . S 6 HOH C 63 1563 147 HOH HOH . S 6 HOH C 64 1564 175 HOH HOH . S 6 HOH C 65 1565 157 HOH HOH . S 6 HOH C 66 1566 292 HOH HOH . S 6 HOH C 67 1567 162 HOH HOH . S 6 HOH C 68 1568 70 HOH HOH . S 6 HOH C 69 1569 66 HOH HOH . S 6 HOH C 70 1570 216 HOH HOH . S 6 HOH C 71 1571 105 HOH HOH . S 6 HOH C 72 1572 51 HOH HOH . S 6 HOH C 73 1573 200 HOH HOH . S 6 HOH C 74 1574 284 HOH HOH . S 6 HOH C 75 1575 288 HOH HOH . S 6 HOH C 76 1576 282 HOH HOH . T 6 HOH H 1 101 285 HOH HOH . T 6 HOH H 2 102 30 HOH HOH . T 6 HOH H 3 103 27 HOH HOH . T 6 HOH H 4 104 97 HOH HOH . T 6 HOH H 5 105 294 HOH HOH . T 6 HOH H 6 106 93 HOH HOH . U 6 HOH I 1 101 156 HOH HOH . U 6 HOH I 2 102 242 HOH HOH . U 6 HOH I 3 103 223 HOH HOH . U 6 HOH I 4 104 151 HOH HOH . V 6 HOH J 1 101 172 HOH HOH . V 6 HOH J 2 102 56 HOH HOH . V 6 HOH J 3 103 18 HOH HOH . V 6 HOH J 4 104 1 HOH HOH . V 6 HOH J 5 105 24 HOH HOH . V 6 HOH J 6 106 96 HOH HOH . V 6 HOH J 7 107 186 HOH HOH . V 6 HOH J 8 108 132 HOH HOH . V 6 HOH J 9 109 89 HOH HOH . V 6 HOH J 10 110 187 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 2.125 _atom_site.Cartn_y -77.824 _atom_site.Cartn_z -0.409 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 45.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 1402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 1 #