data_5W1U # _model_server_result.job_id kFp-ABNYEbFnIElgkMqi4A _model_server_result.datetime_utc '2024-11-24 11:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5W1U # _exptl.entry_id 5W1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W1U _cell.length_a 125.07 _cell.length_b 125.07 _cell.length_c 168.811 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 270 n n C1 C3 MLI sing 271 n n C1 H11 MLI sing 272 n n C1 H12 MLI sing 273 n n C2 O6 MLI doub 274 n n C2 O7 MLI sing 275 n n C3 O8 MLI doub 276 n n C3 O9 MLI sing 277 n n # _atom_sites.entry_id 5W1U _atom_sites.fract_transf_matrix[1][1] 0.007996 _atom_sites.fract_transf_matrix[1][2] 0.004616 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EPE A 1 600 600 EPE EPE . D 3 MLI A 1 601 601 MLI MLI . E 2 EPE B 1 600 600 EPE EPE . F 3 MLI B 1 601 601 MLI MLI . G 4 HOH A 1 701 200 HOH HOH . G 4 HOH A 2 702 179 HOH HOH . G 4 HOH A 3 703 91 HOH HOH . G 4 HOH A 4 704 181 HOH HOH . G 4 HOH A 5 705 160 HOH HOH . G 4 HOH A 6 706 283 HOH HOH . G 4 HOH A 7 707 92 HOH HOH . G 4 HOH A 8 708 132 HOH HOH . G 4 HOH A 9 709 145 HOH HOH . G 4 HOH A 10 710 138 HOH HOH . G 4 HOH A 11 711 177 HOH HOH . G 4 HOH A 12 712 198 HOH HOH . G 4 HOH A 13 713 98 HOH HOH . G 4 HOH A 14 714 275 HOH HOH . G 4 HOH A 15 715 150 HOH HOH . G 4 HOH A 16 716 193 HOH HOH . G 4 HOH A 17 717 287 HOH HOH . G 4 HOH A 18 718 143 HOH HOH . G 4 HOH A 19 719 134 HOH HOH . G 4 HOH A 20 720 259 HOH HOH . G 4 HOH A 21 721 93 HOH HOH . G 4 HOH A 22 722 282 HOH HOH . G 4 HOH A 23 723 166 HOH HOH . G 4 HOH A 24 724 35 HOH HOH . G 4 HOH A 25 725 182 HOH HOH . G 4 HOH A 26 726 11 HOH HOH . G 4 HOH A 27 727 32 HOH HOH . G 4 HOH A 28 728 37 HOH HOH . G 4 HOH A 29 729 3 HOH HOH . G 4 HOH A 30 730 286 HOH HOH . G 4 HOH A 31 731 70 HOH HOH . G 4 HOH A 32 732 67 HOH HOH . G 4 HOH A 33 733 191 HOH HOH . G 4 HOH A 34 734 25 HOH HOH . G 4 HOH A 35 735 176 HOH HOH . G 4 HOH A 36 736 44 HOH HOH . G 4 HOH A 37 737 28 HOH HOH . G 4 HOH A 38 738 111 HOH HOH . G 4 HOH A 39 739 38 HOH HOH . G 4 HOH A 40 740 6 HOH HOH . G 4 HOH A 41 741 1 HOH HOH . G 4 HOH A 42 742 158 HOH HOH . G 4 HOH A 43 743 47 HOH HOH . G 4 HOH A 44 744 236 HOH HOH . G 4 HOH A 45 745 162 HOH HOH . G 4 HOH A 46 746 84 HOH HOH . G 4 HOH A 47 747 146 HOH HOH . G 4 HOH A 48 748 110 HOH HOH . G 4 HOH A 49 749 24 HOH HOH . G 4 HOH A 50 750 205 HOH HOH . G 4 HOH A 51 751 88 HOH HOH . G 4 HOH A 52 752 123 HOH HOH . G 4 HOH A 53 753 218 HOH HOH . G 4 HOH A 54 754 83 HOH HOH . G 4 HOH A 55 755 264 HOH HOH . G 4 HOH A 56 756 186 HOH HOH . G 4 HOH A 57 757 238 HOH HOH . G 4 HOH A 58 758 157 HOH HOH . G 4 HOH A 59 759 77 HOH HOH . G 4 HOH A 60 760 184 HOH HOH . G 4 HOH A 61 761 153 HOH HOH . G 4 HOH A 62 762 49 HOH HOH . G 4 HOH A 63 763 152 HOH HOH . G 4 HOH A 64 764 41 HOH HOH . G 4 HOH A 65 765 255 HOH HOH . G 4 HOH A 66 766 135 HOH HOH . G 4 HOH A 67 767 19 HOH HOH . G 4 HOH A 68 768 10 HOH HOH . G 4 HOH A 69 769 76 HOH HOH . G 4 HOH A 70 770 141 HOH HOH . G 4 HOH A 71 771 62 HOH HOH . G 4 HOH A 72 772 31 HOH HOH . G 4 HOH A 73 773 39 HOH HOH . G 4 HOH A 74 774 117 HOH HOH . G 4 HOH A 75 775 52 HOH HOH . G 4 HOH A 76 776 178 HOH HOH . G 4 HOH A 77 777 154 HOH HOH . G 4 HOH A 78 778 81 HOH HOH . G 4 HOH A 79 779 69 HOH HOH . G 4 HOH A 80 780 16 HOH HOH . G 4 HOH A 81 781 196 HOH HOH . G 4 HOH A 82 782 164 HOH HOH . G 4 HOH A 83 783 72 HOH HOH . G 4 HOH A 84 784 194 HOH HOH . G 4 HOH A 85 785 13 HOH HOH . G 4 HOH A 86 786 183 HOH HOH . G 4 HOH A 87 787 210 HOH HOH . G 4 HOH A 88 788 4 HOH HOH . G 4 HOH A 89 789 284 HOH HOH . G 4 HOH A 90 790 57 HOH HOH . G 4 HOH A 91 791 40 HOH HOH . G 4 HOH A 92 792 115 HOH HOH . G 4 HOH A 93 793 36 HOH HOH . G 4 HOH A 94 794 50 HOH HOH . G 4 HOH A 95 795 42 HOH HOH . G 4 HOH A 96 796 71 HOH HOH . G 4 HOH A 97 797 34 HOH HOH . G 4 HOH A 98 798 212 HOH HOH . G 4 HOH A 99 799 20 HOH HOH . G 4 HOH A 100 800 108 HOH HOH . G 4 HOH A 101 801 273 HOH HOH . G 4 HOH A 102 802 203 HOH HOH . G 4 HOH A 103 803 202 HOH HOH . G 4 HOH A 104 804 163 HOH HOH . G 4 HOH A 105 805 58 HOH HOH . G 4 HOH A 106 806 54 HOH HOH . G 4 HOH A 107 807 274 HOH HOH . G 4 HOH A 108 808 109 HOH HOH . G 4 HOH A 109 809 206 HOH HOH . G 4 HOH A 110 810 272 HOH HOH . G 4 HOH A 111 811 46 HOH HOH . G 4 HOH A 112 812 267 HOH HOH . G 4 HOH A 113 813 266 HOH HOH . G 4 HOH A 114 814 66 HOH HOH . G 4 HOH A 115 815 250 HOH HOH . G 4 HOH A 116 816 208 HOH HOH . G 4 HOH A 117 817 231 HOH HOH . G 4 HOH A 118 818 227 HOH HOH . G 4 HOH A 119 819 204 HOH HOH . G 4 HOH A 120 820 260 HOH HOH . G 4 HOH A 121 821 229 HOH HOH . G 4 HOH A 122 822 129 HOH HOH . G 4 HOH A 123 823 223 HOH HOH . G 4 HOH A 124 824 105 HOH HOH . G 4 HOH A 125 825 258 HOH HOH . H 4 HOH B 1 701 271 HOH HOH . H 4 HOH B 2 702 45 HOH HOH . H 4 HOH B 3 703 133 HOH HOH . H 4 HOH B 4 704 100 HOH HOH . H 4 HOH B 5 705 256 HOH HOH . H 4 HOH B 6 706 197 HOH HOH . H 4 HOH B 7 707 9 HOH HOH . H 4 HOH B 8 708 188 HOH HOH . H 4 HOH B 9 709 96 HOH HOH . H 4 HOH B 10 710 277 HOH HOH . H 4 HOH B 11 711 95 HOH HOH . H 4 HOH B 12 712 278 HOH HOH . H 4 HOH B 13 713 219 HOH HOH . H 4 HOH B 14 714 126 HOH HOH . H 4 HOH B 15 715 199 HOH HOH . H 4 HOH B 16 716 245 HOH HOH . H 4 HOH B 17 717 79 HOH HOH . H 4 HOH B 18 718 156 HOH HOH . H 4 HOH B 19 719 122 HOH HOH . H 4 HOH B 20 720 130 HOH HOH . H 4 HOH B 21 721 87 HOH HOH . H 4 HOH B 22 722 159 HOH HOH . H 4 HOH B 23 723 22 HOH HOH . H 4 HOH B 24 724 268 HOH HOH . H 4 HOH B 25 725 99 HOH HOH . H 4 HOH B 26 726 33 HOH HOH . H 4 HOH B 27 727 63 HOH HOH . H 4 HOH B 28 728 254 HOH HOH . H 4 HOH B 29 729 175 HOH HOH . H 4 HOH B 30 730 23 HOH HOH . H 4 HOH B 31 731 136 HOH HOH . H 4 HOH B 32 732 74 HOH HOH . H 4 HOH B 33 733 102 HOH HOH . H 4 HOH B 34 734 30 HOH HOH . H 4 HOH B 35 735 114 HOH HOH . H 4 HOH B 36 736 14 HOH HOH . H 4 HOH B 37 737 221 HOH HOH . H 4 HOH B 38 738 224 HOH HOH . H 4 HOH B 39 739 118 HOH HOH . H 4 HOH B 40 740 233 HOH HOH . H 4 HOH B 41 741 149 HOH HOH . H 4 HOH B 42 742 187 HOH HOH . H 4 HOH B 43 743 48 HOH HOH . H 4 HOH B 44 744 29 HOH HOH . H 4 HOH B 45 745 192 HOH HOH . H 4 HOH B 46 746 265 HOH HOH . H 4 HOH B 47 747 53 HOH HOH . H 4 HOH B 48 748 75 HOH HOH . H 4 HOH B 49 749 180 HOH HOH . H 4 HOH B 50 750 43 HOH HOH . H 4 HOH B 51 751 8 HOH HOH . H 4 HOH B 52 752 230 HOH HOH . H 4 HOH B 53 753 15 HOH HOH . H 4 HOH B 54 754 151 HOH HOH . H 4 HOH B 55 755 21 HOH HOH . H 4 HOH B 56 756 144 HOH HOH . H 4 HOH B 57 757 280 HOH HOH . H 4 HOH B 58 758 7 HOH HOH . H 4 HOH B 59 759 89 HOH HOH . H 4 HOH B 60 760 251 HOH HOH . H 4 HOH B 61 761 232 HOH HOH . H 4 HOH B 62 762 168 HOH HOH . H 4 HOH B 63 763 51 HOH HOH . H 4 HOH B 64 764 246 HOH HOH . H 4 HOH B 65 765 261 HOH HOH . H 4 HOH B 66 766 17 HOH HOH . H 4 HOH B 67 767 216 HOH HOH . H 4 HOH B 68 768 128 HOH HOH . H 4 HOH B 69 769 262 HOH HOH . H 4 HOH B 70 770 107 HOH HOH . H 4 HOH B 71 771 121 HOH HOH . H 4 HOH B 72 772 78 HOH HOH . H 4 HOH B 73 773 73 HOH HOH . H 4 HOH B 74 774 195 HOH HOH . H 4 HOH B 75 775 12 HOH HOH . H 4 HOH B 76 776 120 HOH HOH . H 4 HOH B 77 777 68 HOH HOH . H 4 HOH B 78 778 119 HOH HOH . H 4 HOH B 79 779 124 HOH HOH . H 4 HOH B 80 780 222 HOH HOH . H 4 HOH B 81 781 167 HOH HOH . H 4 HOH B 82 782 190 HOH HOH . H 4 HOH B 83 783 113 HOH HOH . H 4 HOH B 84 784 116 HOH HOH . H 4 HOH B 85 785 82 HOH HOH . H 4 HOH B 86 786 253 HOH HOH . H 4 HOH B 87 787 101 HOH HOH . H 4 HOH B 88 788 209 HOH HOH . H 4 HOH B 89 789 170 HOH HOH . H 4 HOH B 90 790 127 HOH HOH . H 4 HOH B 91 791 214 HOH HOH . H 4 HOH B 92 792 80 HOH HOH . H 4 HOH B 93 793 270 HOH HOH . H 4 HOH B 94 794 106 HOH HOH . H 4 HOH B 95 795 213 HOH HOH . H 4 HOH B 96 796 56 HOH HOH . H 4 HOH B 97 797 244 HOH HOH . H 4 HOH B 98 798 65 HOH HOH . H 4 HOH B 99 799 234 HOH HOH . H 4 HOH B 100 800 61 HOH HOH . H 4 HOH B 101 801 5 HOH HOH . H 4 HOH B 102 802 18 HOH HOH . H 4 HOH B 103 803 104 HOH HOH . H 4 HOH B 104 804 189 HOH HOH . H 4 HOH B 105 805 173 HOH HOH . H 4 HOH B 106 806 85 HOH HOH . H 4 HOH B 107 807 169 HOH HOH . H 4 HOH B 108 808 27 HOH HOH . H 4 HOH B 109 809 112 HOH HOH . H 4 HOH B 110 810 125 HOH HOH . H 4 HOH B 111 811 239 HOH HOH . H 4 HOH B 112 812 263 HOH HOH . H 4 HOH B 113 813 215 HOH HOH . H 4 HOH B 114 814 226 HOH HOH . H 4 HOH B 115 815 279 HOH HOH . H 4 HOH B 116 816 2 HOH HOH . H 4 HOH B 117 817 241 HOH HOH . H 4 HOH B 118 818 276 HOH HOH . H 4 HOH B 119 819 252 HOH HOH . H 4 HOH B 120 820 55 HOH HOH . H 4 HOH B 121 821 211 HOH HOH . H 4 HOH B 122 822 243 HOH HOH . H 4 HOH B 123 823 217 HOH HOH . H 4 HOH B 124 824 139 HOH HOH . H 4 HOH B 125 825 171 HOH HOH . H 4 HOH B 126 826 235 HOH HOH . H 4 HOH B 127 827 242 HOH HOH . H 4 HOH B 128 828 228 HOH HOH . H 4 HOH B 129 829 220 HOH HOH . H 4 HOH B 130 830 148 HOH HOH . H 4 HOH B 131 831 174 HOH HOH . H 4 HOH B 132 832 269 HOH HOH . H 4 HOH B 133 833 60 HOH HOH . H 4 HOH B 134 834 64 HOH HOH . H 4 HOH B 135 835 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . F 3 67.744 59.618 22.792 1 79.98 ? C1 MLI 601 B 1 HETATM 2 C C2 MLI . . . F 3 67.371 59.235 21.4 1 60.74 ? C2 MLI 601 B 1 HETATM 3 C C3 MLI . . . F 3 67.253 61.029 22.859 1 68.5 ? C3 MLI 601 B 1 HETATM 4 O O6 MLI . . . F 3 67.97 59.783 20.46 1 38.44 ? O6 MLI 601 B 1 HETATM 5 O O7 MLI . . . F 3 66.435 58.402 21.23 1 60.12 ? O7 MLI 601 B 1 HETATM 6 O O8 MLI . . . F 3 67.882 61.807 22.102 1 56.88 ? O8 MLI 601 B 1 HETATM 7 O O9 MLI . . . F 3 66.251 61.381 23.589 1 58.64 ? O9 MLI 601 B 1 HETATM 8 H H11 MLI . . . F 3 67.283 59.057 23.444 1 95.97 ? H11 MLI 601 B 1 HETATM 9 H H12 MLI . . . F 3 68.712 59.579 22.916 1 95.97 ? H12 MLI 601 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #