data_5W23 # _model_server_result.job_id I92nE5eRG8G-yfMxb1jpJQ _model_server_result.datetime_utc '2024-10-28 02:27:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 5W23 # _exptl.entry_id 5W23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W23 _cell.length_a 183.36 _cell.length_b 183.36 _cell.length_c 275.9 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 37 1_555 A SG CYS 439 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 69 A CYS 69 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 313 A CYS 313 1_555 A SG CYS 343 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 322 A CYS 322 1_555 A SG CYS 333 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 358 A CYS 358 1_555 A SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf6 A SG CYS 382 A CYS 382 1_555 A SG CYS 393 A CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 416 A CYS 416 1_555 A SG CYS 422 A CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 B SG CYS 37 B CYS 37 1_555 B SG CYS 439 B CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf9 B SG CYS 69 B CYS 69 1_555 B SG CYS 212 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 313 B CYS 313 1_555 B SG CYS 343 B CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf11 B SG CYS 322 B CYS 322 1_555 B SG CYS 333 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 B SG CYS 358 B CYS 358 1_555 B SG CYS 367 B CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf13 B SG CYS 382 B CYS 382 1_555 B SG CYS 393 B CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf14 B SG CYS 416 B CYS 416 1_555 B SG CYS 422 B CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf15 C SG CYS 37 C CYS 37 1_555 C SG CYS 439 C CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf16 C SG CYS 69 C CYS 69 1_555 C SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 C SG CYS 313 C CYS 313 1_555 C SG CYS 343 C CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 C SG CYS 322 C CYS 322 1_555 C SG CYS 333 C CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 C SG CYS 358 C CYS 358 1_555 C SG CYS 367 C CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf20 C SG CYS 382 C CYS 382 1_555 C SG CYS 393 C CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 C SG CYS 416 C CYS 416 1_555 C SG CYS 422 C CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf22 D SG CYS 45 H CYS 22 1_555 D SG CYS 119 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf23 D SG CYS 174 H CYS 140 1_555 D SG CYS 229 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf24 E SG CYS 46 L CYS 23 1_555 E SG CYS 115 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf25 E SG CYS 161 L CYS 134 1_555 E SG CYS 221 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf26 F SG CYS 45 I CYS 22 1_555 F SG CYS 119 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf27 F SG CYS 174 I CYS 140 1_555 F SG CYS 229 I CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf28 G SG CYS 46 M CYS 23 1_555 G SG CYS 115 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf29 G SG CYS 161 M CYS 134 1_555 G SG CYS 221 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf30 H SG CYS 45 J CYS 22 1_555 H SG CYS 119 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf31 H SG CYS 174 J CYS 140 1_555 H SG CYS 229 J CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf32 I SG CYS 46 N CYS 23 1_555 I SG CYS 115 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf33 I SG CYS 161 N CYS 134 1_555 I SG CYS 221 N CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 H ND1 HIS 80 J HIS 56 1_555 O ZN ZN . J ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 I OE1 GLU 50 N GLU 27 1_555 Q ZN ZN . N ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 I OE1 GLU 120 N GLU 93 1_555 Q ZN ZN . N ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W23 _atom_sites.fract_transf_matrix[1][1] 0.005454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 ZN A 1 601 5 ZN ZN . K 4 ZN B 1 601 6 ZN ZN . L 4 ZN C 1 601 9 ZN ZN . M 4 ZN H 1 301 8 ZN ZN . N 4 ZN I 1 301 7 ZN ZN . O 4 ZN J 1 301 3 ZN ZN . P 4 ZN J 1 302 10 ZN ZN . Q 4 ZN N 1 301 2 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x 142.135 _atom_site.Cartn_y 9.517 _atom_site.Cartn_z 314.431 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 120.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 174 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #