data_5W2I # _model_server_result.job_id cfNCL8Ol-2x7LcaY6p2B9A _model_server_result.datetime_utc '2024-11-05 00:12:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 5W2I # _exptl.entry_id 5W2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.096 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W2I _cell.length_a 78.09 _cell.length_b 78.09 _cell.length_c 86.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 226 A ASP 385 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A OD1 ASP 226 A ASP 385 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc3 A OD2 ASP 226 A ASP 385 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 B MG MG . A MG 701 1_555 D O2A ADP . A ADP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 B MG MG . A MG 701 1_555 D O3B ADP . A ADP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc6 B MG MG . A MG 701 1_555 F O HOH . A HOH 826 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 B MG MG . A MG 701 1_555 F O HOH . A HOH 855 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc8 B MG MG . A MG 701 1_555 F O HOH . A HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc9 C MG MG . A MG 702 1_555 D O1B ADP . A ADP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc10 C MG MG . A MG 702 1_555 F O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc11 C MG MG . A MG 702 1_555 F O HOH . A HOH 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 C MG MG . A MG 702 1_555 F O HOH . A HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc13 C MG MG . A MG 702 1_555 F O HOH . A HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 196 n n C1 C6 I3P sing 197 n n C1 O1 I3P sing 198 n n C1 H1 I3P sing 199 n n C2 C3 I3P sing 200 n n C2 O2 I3P sing 201 n n C2 H2 I3P sing 202 n n C3 C4 I3P sing 203 n n C3 O3 I3P sing 204 n n C3 H3 I3P sing 205 n n C4 C5 I3P sing 206 n n C4 O4 I3P sing 207 n n C4 H4 I3P sing 208 n n C5 C6 I3P sing 209 n n C5 O5 I3P sing 210 n n C5 H5 I3P sing 211 n n C6 O6 I3P sing 212 n n C6 H6 I3P sing 213 n n O1 P1 I3P sing 214 n n O2 HO2 I3P sing 215 n n O3 HO3 I3P sing 216 n n O4 P4 I3P sing 217 n n O5 P5 I3P sing 218 n n O6 HO6 I3P sing 219 n n P1 O11 I3P doub 220 n n P1 O12 I3P sing 221 n n P1 O13 I3P sing 222 n n O12 HO12 I3P sing 223 n n O13 HO13 I3P sing 224 n n P4 O41 I3P doub 225 n n P4 O42 I3P sing 226 n n P4 O43 I3P sing 227 n n O42 HO42 I3P sing 228 n n O43 HO43 I3P sing 229 n n P5 O51 I3P doub 230 n n P5 O52 I3P sing 231 n n P5 O53 I3P sing 232 n n O52 HO52 I3P sing 233 n n O53 HO53 I3P sing 234 n n # _atom_sites.entry_id 5W2I _atom_sites.fract_transf_matrix[1][1] 0.012806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 501 MG MG . C 2 MG A 1 702 502 MG MG . D 3 ADP A 1 703 1001 ADP ADP . E 4 I3P A 1 704 1002 I3P I3P . F 5 HOH A 1 800 155 HOH HOH . F 5 HOH A 2 801 153 HOH HOH . F 5 HOH A 3 802 87 HOH HOH . F 5 HOH A 4 803 52 HOH HOH . F 5 HOH A 5 804 152 HOH HOH . F 5 HOH A 6 805 132 HOH HOH . F 5 HOH A 7 806 84 HOH HOH . F 5 HOH A 8 807 159 HOH HOH . F 5 HOH A 9 808 72 HOH HOH . F 5 HOH A 10 809 171 HOH HOH . F 5 HOH A 11 810 173 HOH HOH . F 5 HOH A 12 811 125 HOH HOH . F 5 HOH A 13 812 70 HOH HOH . F 5 HOH A 14 813 35 HOH HOH . F 5 HOH A 15 814 69 HOH HOH . F 5 HOH A 16 815 25 HOH HOH . F 5 HOH A 17 816 135 HOH HOH . F 5 HOH A 18 817 94 HOH HOH . F 5 HOH A 19 818 24 HOH HOH . F 5 HOH A 20 819 100 HOH HOH . F 5 HOH A 21 820 38 HOH HOH . F 5 HOH A 22 821 180 HOH HOH . F 5 HOH A 23 822 107 HOH HOH . F 5 HOH A 24 823 81 HOH HOH . F 5 HOH A 25 824 73 HOH HOH . F 5 HOH A 26 825 3 HOH HOH . F 5 HOH A 27 826 88 HOH HOH . F 5 HOH A 28 827 59 HOH HOH . F 5 HOH A 29 828 61 HOH HOH . F 5 HOH A 30 829 10 HOH HOH . F 5 HOH A 31 830 136 HOH HOH . F 5 HOH A 32 831 142 HOH HOH . F 5 HOH A 33 832 51 HOH HOH . F 5 HOH A 34 833 174 HOH HOH . F 5 HOH A 35 834 45 HOH HOH . F 5 HOH A 36 835 37 HOH HOH . F 5 HOH A 37 836 105 HOH HOH . F 5 HOH A 38 837 122 HOH HOH . F 5 HOH A 39 838 66 HOH HOH . F 5 HOH A 40 839 164 HOH HOH . F 5 HOH A 41 840 23 HOH HOH . F 5 HOH A 42 841 12 HOH HOH . F 5 HOH A 43 842 83 HOH HOH . F 5 HOH A 44 843 68 HOH HOH . F 5 HOH A 45 844 11 HOH HOH . F 5 HOH A 46 845 182 HOH HOH . F 5 HOH A 47 846 97 HOH HOH . F 5 HOH A 48 847 120 HOH HOH . F 5 HOH A 49 848 6 HOH HOH . F 5 HOH A 50 849 33 HOH HOH . F 5 HOH A 51 850 101 HOH HOH . F 5 HOH A 52 851 112 HOH HOH . F 5 HOH A 53 852 2 HOH HOH . F 5 HOH A 54 853 78 HOH HOH . F 5 HOH A 55 854 4 HOH HOH . F 5 HOH A 56 855 63 HOH HOH . F 5 HOH A 57 856 18 HOH HOH . F 5 HOH A 58 857 128 HOH HOH . F 5 HOH A 59 858 21 HOH HOH . F 5 HOH A 60 859 127 HOH HOH . F 5 HOH A 61 860 116 HOH HOH . F 5 HOH A 62 861 140 HOH HOH . F 5 HOH A 63 862 106 HOH HOH . F 5 HOH A 64 863 109 HOH HOH . F 5 HOH A 65 864 118 HOH HOH . F 5 HOH A 66 865 126 HOH HOH . F 5 HOH A 67 866 110 HOH HOH . F 5 HOH A 68 867 58 HOH HOH . F 5 HOH A 69 868 8 HOH HOH . F 5 HOH A 70 869 42 HOH HOH . F 5 HOH A 71 870 56 HOH HOH . F 5 HOH A 72 871 16 HOH HOH . F 5 HOH A 73 872 34 HOH HOH . F 5 HOH A 74 873 1 HOH HOH . F 5 HOH A 75 874 137 HOH HOH . F 5 HOH A 76 875 26 HOH HOH . F 5 HOH A 77 876 76 HOH HOH . F 5 HOH A 78 877 166 HOH HOH . F 5 HOH A 79 878 123 HOH HOH . F 5 HOH A 80 879 22 HOH HOH . F 5 HOH A 81 880 71 HOH HOH . F 5 HOH A 82 881 27 HOH HOH . F 5 HOH A 83 882 62 HOH HOH . F 5 HOH A 84 883 47 HOH HOH . F 5 HOH A 85 884 49 HOH HOH . F 5 HOH A 86 885 13 HOH HOH . F 5 HOH A 87 886 131 HOH HOH . F 5 HOH A 88 887 133 HOH HOH . F 5 HOH A 89 888 147 HOH HOH . F 5 HOH A 90 889 93 HOH HOH . F 5 HOH A 91 890 5 HOH HOH . F 5 HOH A 92 891 170 HOH HOH . F 5 HOH A 93 892 89 HOH HOH . F 5 HOH A 94 893 98 HOH HOH . F 5 HOH A 95 894 108 HOH HOH . F 5 HOH A 96 895 17 HOH HOH . F 5 HOH A 97 896 117 HOH HOH . F 5 HOH A 98 897 80 HOH HOH . F 5 HOH A 99 898 141 HOH HOH . F 5 HOH A 100 899 39 HOH HOH . F 5 HOH A 101 900 99 HOH HOH . F 5 HOH A 102 901 36 HOH HOH . F 5 HOH A 103 902 91 HOH HOH . F 5 HOH A 104 903 44 HOH HOH . F 5 HOH A 105 904 9 HOH HOH . F 5 HOH A 106 905 31 HOH HOH . F 5 HOH A 107 906 90 HOH HOH . F 5 HOH A 108 907 46 HOH HOH . F 5 HOH A 109 908 148 HOH HOH . F 5 HOH A 110 909 144 HOH HOH . F 5 HOH A 111 910 20 HOH HOH . F 5 HOH A 112 911 124 HOH HOH . F 5 HOH A 113 912 121 HOH HOH . F 5 HOH A 114 913 150 HOH HOH . F 5 HOH A 115 914 55 HOH HOH . F 5 HOH A 116 915 64 HOH HOH . F 5 HOH A 117 916 7 HOH HOH . F 5 HOH A 118 917 14 HOH HOH . F 5 HOH A 119 918 162 HOH HOH . F 5 HOH A 120 919 134 HOH HOH . F 5 HOH A 121 920 75 HOH HOH . F 5 HOH A 122 921 32 HOH HOH . F 5 HOH A 123 922 50 HOH HOH . F 5 HOH A 124 923 43 HOH HOH . F 5 HOH A 125 924 19 HOH HOH . F 5 HOH A 126 925 104 HOH HOH . F 5 HOH A 127 926 86 HOH HOH . F 5 HOH A 128 927 77 HOH HOH . F 5 HOH A 129 928 151 HOH HOH . F 5 HOH A 130 929 40 HOH HOH . F 5 HOH A 131 930 139 HOH HOH . F 5 HOH A 132 931 114 HOH HOH . F 5 HOH A 133 932 96 HOH HOH . F 5 HOH A 134 933 29 HOH HOH . F 5 HOH A 135 934 30 HOH HOH . F 5 HOH A 136 935 28 HOH HOH . F 5 HOH A 137 936 57 HOH HOH . F 5 HOH A 138 937 130 HOH HOH . F 5 HOH A 139 938 178 HOH HOH . F 5 HOH A 140 939 67 HOH HOH . F 5 HOH A 141 940 15 HOH HOH . F 5 HOH A 142 941 129 HOH HOH . F 5 HOH A 143 942 157 HOH HOH . F 5 HOH A 144 943 95 HOH HOH . F 5 HOH A 145 944 41 HOH HOH . F 5 HOH A 146 945 149 HOH HOH . F 5 HOH A 147 946 60 HOH HOH . F 5 HOH A 148 947 181 HOH HOH . F 5 HOH A 149 948 92 HOH HOH . F 5 HOH A 150 949 161 HOH HOH . F 5 HOH A 151 950 103 HOH HOH . F 5 HOH A 152 951 53 HOH HOH . F 5 HOH A 153 952 158 HOH HOH . F 5 HOH A 154 953 82 HOH HOH . F 5 HOH A 155 954 115 HOH HOH . F 5 HOH A 156 955 169 HOH HOH . F 5 HOH A 157 956 113 HOH HOH . F 5 HOH A 158 957 74 HOH HOH . F 5 HOH A 159 958 85 HOH HOH . F 5 HOH A 160 959 119 HOH HOH . F 5 HOH A 161 960 54 HOH HOH . F 5 HOH A 162 961 163 HOH HOH . F 5 HOH A 163 962 102 HOH HOH . F 5 HOH A 164 963 48 HOH HOH . F 5 HOH A 165 964 168 HOH HOH . F 5 HOH A 166 965 167 HOH HOH . F 5 HOH A 167 966 165 HOH HOH . F 5 HOH A 168 967 79 HOH HOH . F 5 HOH A 169 968 156 HOH HOH . F 5 HOH A 170 969 146 HOH HOH . F 5 HOH A 171 970 138 HOH HOH . F 5 HOH A 172 971 111 HOH HOH . F 5 HOH A 173 972 176 HOH HOH . F 5 HOH A 174 973 160 HOH HOH . F 5 HOH A 175 974 177 HOH HOH . F 5 HOH A 176 975 143 HOH HOH . F 5 HOH A 177 976 175 HOH HOH . F 5 HOH A 178 977 179 HOH HOH . F 5 HOH A 179 978 145 HOH HOH . F 5 HOH A 180 979 65 HOH HOH . F 5 HOH A 181 980 154 HOH HOH . F 5 HOH A 182 981 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . E 4 15.085 17.279 35.384 1 24.08 ? C1 I3P 704 A 1 HETATM 2 C C2 I3P . . . E 4 13.912 16.714 34.58 1 22.9 ? C2 I3P 704 A 1 HETATM 3 C C3 I3P . . . E 4 14.239 16.818 33.092 1 19.34 ? C3 I3P 704 A 1 HETATM 4 C C4 I3P . . . E 4 15.535 16.065 32.765 1 19.6 ? C4 I3P 704 A 1 HETATM 5 C C5 I3P . . . E 4 16.696 16.561 33.623 1 21.9 ? C5 I3P 704 A 1 HETATM 6 C C6 I3P . . . E 4 16.35 16.476 35.105 1 22.36 ? C6 I3P 704 A 1 HETATM 7 O O1 I3P . . . E 4 14.803 17.277 36.785 1 28.88 ? O1 I3P 704 A 1 HETATM 8 O O2 I3P . . . E 4 13.662 15.348 34.932 1 24.4 ? O2 I3P 704 A 1 HETATM 9 O O3 I3P . . . E 4 13.132 16.316 32.319 1 23.67 ? O3 I3P 704 A 1 HETATM 10 O O4 I3P . . . E 4 15.896 16.261 31.41 1 17.75 ? O4 I3P 704 A 1 HETATM 11 O O5 I3P . . . E 4 17.853 15.778 33.343 1 24 ? O5 I3P 704 A 1 HETATM 12 O O6 I3P . . . E 4 17.422 17.005 35.882 1 27.14 ? O6 I3P 704 A 1 HETATM 13 P P1 I3P . . . E 4 14.252 18.625 37.471 1 30.3 ? P1 I3P 704 A 1 HETATM 14 O O11 I3P . . . E 4 13.122 19.047 36.553 1 34.23 ? O11 I3P 704 A 1 HETATM 15 O O12 I3P . . . E 4 15.459 19.541 37.5 1 35.89 ? O12 I3P 704 A 1 HETATM 16 O O13 I3P . . . E 4 13.814 18.178 38.837 1 29.16 ? O13 I3P 704 A 1 HETATM 17 P P4 I3P . . . E 4 15.669 15.162 30.252 1 17.89 ? P4 I3P 704 A 1 HETATM 18 O O41 I3P . . . E 4 16.217 15.802 28.992 1 14.69 ? O41 I3P 704 A 1 HETATM 19 O O42 I3P . . . E 4 14.165 15.023 30.222 1 18.77 ? O42 I3P 704 A 1 HETATM 20 O O43 I3P . . . E 4 16.423 13.946 30.713 1 26.09 ? O43 I3P 704 A 1 HETATM 21 P P5 I3P . . . E 4 19.342 16.401 33.234 1 27.2 ? P5 I3P 704 A 1 HETATM 22 O O51 I3P . . . E 4 19.189 17.577 32.288 1 30.5 ? O51 I3P 704 A 1 HETATM 23 O O52 I3P . . . E 4 20.183 15.275 32.673 1 32.51 ? O52 I3P 704 A 1 HETATM 24 O O53 I3P . . . E 4 19.68 16.764 34.658 1 30.94 ? O53 I3P 704 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #