data_5W2P # _model_server_result.job_id nKz5Pb4NtFfTicwfcqmZiA _model_server_result.datetime_utc '2024-11-24 04:43:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 5W2P # _exptl.entry_id 5W2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.186 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3',3''-phosphanetriyltripropanoic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W2P _cell.length_a 77.298 _cell.length_b 77.298 _cell.length_c 145.208 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -48.402667 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 332 A ASN 309 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc2 A OD1 ASN 332 A ASN 309 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc3 A O ALA 333 A ALA 310 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 A OE1 GLU 377 A GLU 354 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 A OD1 ASN 422 A ASN 399 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 A O ASN 423 A ASN 400 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? # _chem_comp.formula 'C9 H15 O6 P' _chem_comp.formula_weight 250.186 _chem_comp.id TCE _chem_comp.mon_nstd_flag . _chem_comp.name "3,3',3''-phosphanetriyltripropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[bis(2-carboxyethyl)phosphanyl]propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C14 TCE doub 350 n n C14 O15 TCE sing 351 n n C14 C5 TCE sing 352 n n O15 HO15 TCE sing 353 n n C2 C5 TCE sing 354 n n C5 H5 TCE sing 355 n n C5 H5A TCE sing 356 n n C2 P TCE sing 357 n n C2 H2 TCE sing 358 n n C2 H2A TCE sing 359 n n C1 P TCE sing 360 n n P C3 TCE sing 361 n n C3 C6 TCE sing 362 n n C3 H3 TCE sing 363 n n C3 H3A TCE sing 364 n n C6 C8 TCE sing 365 n n C6 H6 TCE sing 366 n n C6 H6A TCE sing 367 n n O10 C8 TCE doub 368 n n C8 O9 TCE sing 369 n n O9 HO9 TCE sing 370 n n C4 C1 TCE sing 371 n n C1 H1 TCE sing 372 n n C1 H1A TCE sing 373 n n C11 C4 TCE sing 374 n n C4 H4 TCE sing 375 n n C4 H4A TCE sing 376 n n O13 C11 TCE doub 377 n n O12 C11 TCE sing 378 n n O12 HO12 TCE sing 379 n n # _atom_sites.entry_id 5W2P _atom_sites.fract_transf_matrix[1][1] 0.012937 _atom_sites.fract_transf_matrix[1][2] 0.007469 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6U5 A 1 501 1 6U5 6U5 . C 2 6U5 A 1 502 2 6U5 6U5 . D 3 GOL A 1 503 1 GOL GOL . E 4 NA A 1 504 1 NA NA . F 5 IPA A 1 505 1 IPA IPA . G 5 IPA A 1 506 2 IPA IPA . H 5 IPA A 1 507 3 IPA IPA . I 6 TCE A 1 508 1 TCE TCP . J 7 HOH A 1 601 138 HOH HOH . J 7 HOH A 2 602 69 HOH HOH . J 7 HOH A 3 603 75 HOH HOH . J 7 HOH A 4 604 136 HOH HOH . J 7 HOH A 5 605 53 HOH HOH . J 7 HOH A 6 606 79 HOH HOH . J 7 HOH A 7 607 32 HOH HOH . J 7 HOH A 8 608 146 HOH HOH . J 7 HOH A 9 609 34 HOH HOH . J 7 HOH A 10 610 147 HOH HOH . J 7 HOH A 11 611 120 HOH HOH . J 7 HOH A 12 612 137 HOH HOH . J 7 HOH A 13 613 91 HOH HOH . J 7 HOH A 14 614 29 HOH HOH . J 7 HOH A 15 615 17 HOH HOH . J 7 HOH A 16 616 67 HOH HOH . J 7 HOH A 17 617 130 HOH HOH . J 7 HOH A 18 618 31 HOH HOH . J 7 HOH A 19 619 113 HOH HOH . J 7 HOH A 20 620 21 HOH HOH . J 7 HOH A 21 621 11 HOH HOH . J 7 HOH A 22 622 117 HOH HOH . J 7 HOH A 23 623 33 HOH HOH . J 7 HOH A 24 624 41 HOH HOH . J 7 HOH A 25 625 129 HOH HOH . J 7 HOH A 26 626 6 HOH HOH . J 7 HOH A 27 627 101 HOH HOH . J 7 HOH A 28 628 42 HOH HOH . J 7 HOH A 29 629 28 HOH HOH . J 7 HOH A 30 630 71 HOH HOH . J 7 HOH A 31 631 94 HOH HOH . J 7 HOH A 32 632 108 HOH HOH . J 7 HOH A 33 633 40 HOH HOH . J 7 HOH A 34 634 7 HOH HOH . J 7 HOH A 35 635 10 HOH HOH . J 7 HOH A 36 636 27 HOH HOH . J 7 HOH A 37 637 3 HOH HOH . J 7 HOH A 38 638 122 HOH HOH . J 7 HOH A 39 639 110 HOH HOH . J 7 HOH A 40 640 131 HOH HOH . J 7 HOH A 41 641 88 HOH HOH . J 7 HOH A 42 642 127 HOH HOH . J 7 HOH A 43 643 59 HOH HOH . J 7 HOH A 44 644 64 HOH HOH . J 7 HOH A 45 645 43 HOH HOH . J 7 HOH A 46 646 87 HOH HOH . J 7 HOH A 47 647 25 HOH HOH . J 7 HOH A 48 648 102 HOH HOH . J 7 HOH A 49 649 20 HOH HOH . J 7 HOH A 50 650 63 HOH HOH . J 7 HOH A 51 651 162 HOH HOH . J 7 HOH A 52 652 93 HOH HOH . J 7 HOH A 53 653 54 HOH HOH . J 7 HOH A 54 654 76 HOH HOH . J 7 HOH A 55 655 61 HOH HOH . J 7 HOH A 56 656 89 HOH HOH . J 7 HOH A 57 657 45 HOH HOH . J 7 HOH A 58 658 109 HOH HOH . J 7 HOH A 59 659 105 HOH HOH . J 7 HOH A 60 660 118 HOH HOH . J 7 HOH A 61 661 81 HOH HOH . J 7 HOH A 62 662 12 HOH HOH . J 7 HOH A 63 663 133 HOH HOH . J 7 HOH A 64 664 51 HOH HOH . J 7 HOH A 65 665 82 HOH HOH . J 7 HOH A 66 666 115 HOH HOH . J 7 HOH A 67 667 57 HOH HOH . J 7 HOH A 68 668 161 HOH HOH . J 7 HOH A 69 669 49 HOH HOH . J 7 HOH A 70 670 97 HOH HOH . J 7 HOH A 71 671 84 HOH HOH . J 7 HOH A 72 672 9 HOH HOH . J 7 HOH A 73 673 35 HOH HOH . J 7 HOH A 74 674 38 HOH HOH . J 7 HOH A 75 675 39 HOH HOH . J 7 HOH A 76 676 46 HOH HOH . J 7 HOH A 77 677 100 HOH HOH . J 7 HOH A 78 678 72 HOH HOH . J 7 HOH A 79 679 74 HOH HOH . J 7 HOH A 80 680 5 HOH HOH . J 7 HOH A 81 681 80 HOH HOH . J 7 HOH A 82 682 70 HOH HOH . J 7 HOH A 83 683 128 HOH HOH . J 7 HOH A 84 684 50 HOH HOH . J 7 HOH A 85 685 98 HOH HOH . J 7 HOH A 86 686 142 HOH HOH . J 7 HOH A 87 687 96 HOH HOH . J 7 HOH A 88 688 154 HOH HOH . J 7 HOH A 89 689 135 HOH HOH . J 7 HOH A 90 690 139 HOH HOH . J 7 HOH A 91 691 2 HOH HOH . J 7 HOH A 92 692 37 HOH HOH . J 7 HOH A 93 693 8 HOH HOH . J 7 HOH A 94 694 66 HOH HOH . J 7 HOH A 95 695 4 HOH HOH . J 7 HOH A 96 696 90 HOH HOH . J 7 HOH A 97 697 23 HOH HOH . J 7 HOH A 98 698 148 HOH HOH . J 7 HOH A 99 699 48 HOH HOH . J 7 HOH A 100 700 73 HOH HOH . J 7 HOH A 101 701 150 HOH HOH . J 7 HOH A 102 702 55 HOH HOH . J 7 HOH A 103 703 14 HOH HOH . J 7 HOH A 104 704 99 HOH HOH . J 7 HOH A 105 705 123 HOH HOH . J 7 HOH A 106 706 145 HOH HOH . J 7 HOH A 107 707 1 HOH HOH . J 7 HOH A 108 708 104 HOH HOH . J 7 HOH A 109 709 121 HOH HOH . J 7 HOH A 110 710 155 HOH HOH . J 7 HOH A 111 711 22 HOH HOH . J 7 HOH A 112 712 19 HOH HOH . J 7 HOH A 113 713 44 HOH HOH . J 7 HOH A 114 714 153 HOH HOH . J 7 HOH A 115 715 107 HOH HOH . J 7 HOH A 116 716 15 HOH HOH . J 7 HOH A 117 717 13 HOH HOH . J 7 HOH A 118 718 106 HOH HOH . J 7 HOH A 119 719 86 HOH HOH . J 7 HOH A 120 720 24 HOH HOH . J 7 HOH A 121 721 36 HOH HOH . J 7 HOH A 122 722 134 HOH HOH . J 7 HOH A 123 723 124 HOH HOH . J 7 HOH A 124 724 149 HOH HOH . J 7 HOH A 125 725 26 HOH HOH . J 7 HOH A 126 726 68 HOH HOH . J 7 HOH A 127 727 30 HOH HOH . J 7 HOH A 128 728 47 HOH HOH . J 7 HOH A 129 729 62 HOH HOH . J 7 HOH A 130 730 156 HOH HOH . J 7 HOH A 131 731 52 HOH HOH . J 7 HOH A 132 732 111 HOH HOH . J 7 HOH A 133 733 83 HOH HOH . J 7 HOH A 134 734 58 HOH HOH . J 7 HOH A 135 735 56 HOH HOH . J 7 HOH A 136 736 92 HOH HOH . J 7 HOH A 137 737 163 HOH HOH . J 7 HOH A 138 738 112 HOH HOH . J 7 HOH A 139 739 77 HOH HOH . J 7 HOH A 140 740 60 HOH HOH . J 7 HOH A 141 741 78 HOH HOH . J 7 HOH A 142 742 141 HOH HOH . J 7 HOH A 143 743 65 HOH HOH . J 7 HOH A 144 744 157 HOH HOH . J 7 HOH A 145 745 103 HOH HOH . J 7 HOH A 146 746 144 HOH HOH . J 7 HOH A 147 747 95 HOH HOH . J 7 HOH A 148 748 85 HOH HOH . J 7 HOH A 149 749 18 HOH HOH . J 7 HOH A 150 750 160 HOH HOH . J 7 HOH A 151 751 159 HOH HOH . J 7 HOH A 152 752 126 HOH HOH . J 7 HOH A 153 753 151 HOH HOH . J 7 HOH A 154 754 125 HOH HOH . J 7 HOH A 155 755 140 HOH HOH . J 7 HOH A 156 756 158 HOH HOH . J 7 HOH A 157 757 143 HOH HOH . J 7 HOH A 158 758 152 HOH HOH . J 7 HOH A 159 759 114 HOH HOH . J 7 HOH A 160 760 119 HOH HOH . J 7 HOH A 161 761 116 HOH HOH . J 7 HOH A 162 762 16 HOH HOH . J 7 HOH A 163 763 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 TCE . . . I 6 31.361 -18.758 -37.91 1 88.97 ? O16 TCE 508 A 1 HETATM 2 C C14 TCE . . . I 6 31.977 -19.674 -37.301 1 90.24 ? C14 TCE 508 A 1 HETATM 3 O O15 TCE . . . I 6 33.075 -20.111 -37.746 1 89.17 ? O15 TCE 508 A 1 HETATM 4 C C5 TCE . . . I 6 31.393 -20.252 -36.013 1 91.2 ? C5 TCE 508 A 1 HETATM 5 C C2 TCE . . . I 6 30.293 -21.284 -36.248 1 94.84 ? C2 TCE 508 A 1 HETATM 6 P P TCE . . . I 6 29.959 -22.292 -34.712 1 96.97 ? P TCE 508 A 1 HETATM 7 C C3 TCE . . . I 6 28.359 -21.725 -33.948 1 90.83 ? C3 TCE 508 A 1 HETATM 8 C C6 TCE . . . I 6 27.364 -21.409 -35.064 1 88.52 ? C6 TCE 508 A 1 HETATM 9 C C8 TCE . . . I 6 26.267 -20.433 -34.647 1 78.98 ? C8 TCE 508 A 1 HETATM 10 O O10 TCE . . . I 6 26.394 -19.186 -34.862 1 74 ? O10 TCE 508 A 1 HETATM 11 O O9 TCE . . . I 6 25.237 -20.901 -34.092 1 68.55 ? O9 TCE 508 A 1 HETATM 12 C C1 TCE . . . I 6 31.378 -22.121 -33.518 1 87.36 ? C1 TCE 508 A 1 HETATM 13 C C4 TCE . . . I 6 31.643 -23.405 -32.733 1 76.28 ? C4 TCE 508 A 1 HETATM 14 C C11 TCE . . . I 6 33.134 -23.562 -32.44 1 74.82 ? C11 TCE 508 A 1 HETATM 15 O O12 TCE . . . I 6 33.587 -23.416 -31.267 1 73.01 ? O12 TCE 508 A 1 HETATM 16 O O13 TCE . . . I 6 33.918 -23.83 -33.392 1 75.14 ? O13 TCE 508 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 434 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #