data_5W2Q # _model_server_result.job_id JzwA8IStb8CRRhvu8RQfzA _model_server_result.datetime_utc '2024-11-28 04:20:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 5W2Q # _exptl.entry_id 5W2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.186 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3',3''-phosphanetriyltripropanoic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W2Q _cell.length_a 77.289 _cell.length_b 77.289 _cell.length_c 145.126 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -48.375333 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 332 A ASN 309 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc2 A OD1 ASN 332 A ASN 309 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 A O ALA 333 A ALA 310 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc4 A OE1 GLU 377 A GLU 354 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 A OD1 ASN 422 A ASN 399 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc6 A O ASN 423 A ASN 400 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? # _chem_comp.formula 'C9 H15 O6 P' _chem_comp.formula_weight 250.186 _chem_comp.id TCE _chem_comp.mon_nstd_flag . _chem_comp.name "3,3',3''-phosphanetriyltripropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[bis(2-carboxyethyl)phosphanyl]propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C14 TCE doub 350 n n C14 O15 TCE sing 351 n n C14 C5 TCE sing 352 n n O15 HO15 TCE sing 353 n n C2 C5 TCE sing 354 n n C5 H5 TCE sing 355 n n C5 H5A TCE sing 356 n n C2 P TCE sing 357 n n C2 H2 TCE sing 358 n n C2 H2A TCE sing 359 n n C1 P TCE sing 360 n n P C3 TCE sing 361 n n C3 C6 TCE sing 362 n n C3 H3 TCE sing 363 n n C3 H3A TCE sing 364 n n C6 C8 TCE sing 365 n n C6 H6 TCE sing 366 n n C6 H6A TCE sing 367 n n O10 C8 TCE doub 368 n n C8 O9 TCE sing 369 n n O9 HO9 TCE sing 370 n n C4 C1 TCE sing 371 n n C1 H1 TCE sing 372 n n C1 H1A TCE sing 373 n n C11 C4 TCE sing 374 n n C4 H4 TCE sing 375 n n C4 H4A TCE sing 376 n n O13 C11 TCE doub 377 n n O12 C11 TCE sing 378 n n O12 HO12 TCE sing 379 n n # _atom_sites.entry_id 5W2Q _atom_sites.fract_transf_matrix[1][1] 0.012938 _atom_sites.fract_transf_matrix[1][2] 0.00747 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6U5 A 1 501 1 6U5 6U5 . C 2 6U5 A 1 502 2 6U5 6U5 . D 3 GOL A 1 503 1 GOL GOL . E 4 NA A 1 504 1 NA NA . F 5 IPA A 1 505 1 IPA IPA . G 5 IPA A 1 506 2 IPA IPA . H 5 IPA A 1 507 3 IPA IPA . I 6 TCE A 1 508 1 TCE TCP . J 7 HOH A 1 601 150 HOH HOH . J 7 HOH A 2 602 142 HOH HOH . J 7 HOH A 3 603 174 HOH HOH . J 7 HOH A 4 604 188 HOH HOH . J 7 HOH A 5 605 71 HOH HOH . J 7 HOH A 6 606 62 HOH HOH . J 7 HOH A 7 607 155 HOH HOH . J 7 HOH A 8 608 137 HOH HOH . J 7 HOH A 9 609 82 HOH HOH . J 7 HOH A 10 610 77 HOH HOH . J 7 HOH A 11 611 193 HOH HOH . J 7 HOH A 12 612 163 HOH HOH . J 7 HOH A 13 613 34 HOH HOH . J 7 HOH A 14 614 73 HOH HOH . J 7 HOH A 15 615 69 HOH HOH . J 7 HOH A 16 616 96 HOH HOH . J 7 HOH A 17 617 61 HOH HOH . J 7 HOH A 18 618 181 HOH HOH . J 7 HOH A 19 619 173 HOH HOH . J 7 HOH A 20 620 31 HOH HOH . J 7 HOH A 21 621 109 HOH HOH . J 7 HOH A 22 622 97 HOH HOH . J 7 HOH A 23 623 110 HOH HOH . J 7 HOH A 24 624 6 HOH HOH . J 7 HOH A 25 625 130 HOH HOH . J 7 HOH A 26 626 28 HOH HOH . J 7 HOH A 27 627 170 HOH HOH . J 7 HOH A 28 628 148 HOH HOH . J 7 HOH A 29 629 179 HOH HOH . J 7 HOH A 30 630 10 HOH HOH . J 7 HOH A 31 631 79 HOH HOH . J 7 HOH A 32 632 180 HOH HOH . J 7 HOH A 33 633 177 HOH HOH . J 7 HOH A 34 634 39 HOH HOH . J 7 HOH A 35 635 29 HOH HOH . J 7 HOH A 36 636 189 HOH HOH . J 7 HOH A 37 637 158 HOH HOH . J 7 HOH A 38 638 11 HOH HOH . J 7 HOH A 39 639 53 HOH HOH . J 7 HOH A 40 640 124 HOH HOH . J 7 HOH A 41 641 118 HOH HOH . J 7 HOH A 42 642 46 HOH HOH . J 7 HOH A 43 643 32 HOH HOH . J 7 HOH A 44 644 120 HOH HOH . J 7 HOH A 45 645 17 HOH HOH . J 7 HOH A 46 646 100 HOH HOH . J 7 HOH A 47 647 42 HOH HOH . J 7 HOH A 48 648 171 HOH HOH . J 7 HOH A 49 649 41 HOH HOH . J 7 HOH A 50 650 66 HOH HOH . J 7 HOH A 51 651 156 HOH HOH . J 7 HOH A 52 652 43 HOH HOH . J 7 HOH A 53 653 93 HOH HOH . J 7 HOH A 54 654 153 HOH HOH . J 7 HOH A 55 655 149 HOH HOH . J 7 HOH A 56 656 45 HOH HOH . J 7 HOH A 57 657 63 HOH HOH . J 7 HOH A 58 658 21 HOH HOH . J 7 HOH A 59 659 99 HOH HOH . J 7 HOH A 60 660 2 HOH HOH . J 7 HOH A 61 661 131 HOH HOH . J 7 HOH A 62 662 94 HOH HOH . J 7 HOH A 63 663 95 HOH HOH . J 7 HOH A 64 664 83 HOH HOH . J 7 HOH A 65 665 54 HOH HOH . J 7 HOH A 66 666 27 HOH HOH . J 7 HOH A 67 667 12 HOH HOH . J 7 HOH A 68 668 160 HOH HOH . J 7 HOH A 69 669 7 HOH HOH . J 7 HOH A 70 670 134 HOH HOH . J 7 HOH A 71 671 175 HOH HOH . J 7 HOH A 72 672 20 HOH HOH . J 7 HOH A 73 673 40 HOH HOH . J 7 HOH A 74 674 3 HOH HOH . J 7 HOH A 75 675 44 HOH HOH . J 7 HOH A 76 676 51 HOH HOH . J 7 HOH A 77 677 139 HOH HOH . J 7 HOH A 78 678 119 HOH HOH . J 7 HOH A 79 679 81 HOH HOH . J 7 HOH A 80 680 168 HOH HOH . J 7 HOH A 81 681 132 HOH HOH . J 7 HOH A 82 682 85 HOH HOH . J 7 HOH A 83 683 105 HOH HOH . J 7 HOH A 84 684 59 HOH HOH . J 7 HOH A 85 685 4 HOH HOH . J 7 HOH A 86 686 144 HOH HOH . J 7 HOH A 87 687 183 HOH HOH . J 7 HOH A 88 688 199 HOH HOH . J 7 HOH A 89 689 107 HOH HOH . J 7 HOH A 90 690 128 HOH HOH . J 7 HOH A 91 691 25 HOH HOH . J 7 HOH A 92 692 115 HOH HOH . J 7 HOH A 93 693 197 HOH HOH . J 7 HOH A 94 694 74 HOH HOH . J 7 HOH A 95 695 108 HOH HOH . J 7 HOH A 96 696 49 HOH HOH . J 7 HOH A 97 697 26 HOH HOH . J 7 HOH A 98 698 187 HOH HOH . J 7 HOH A 99 699 35 HOH HOH . J 7 HOH A 100 700 37 HOH HOH . J 7 HOH A 101 701 48 HOH HOH . J 7 HOH A 102 702 184 HOH HOH . J 7 HOH A 103 703 102 HOH HOH . J 7 HOH A 104 704 76 HOH HOH . J 7 HOH A 105 705 147 HOH HOH . J 7 HOH A 106 706 8 HOH HOH . J 7 HOH A 107 707 91 HOH HOH . J 7 HOH A 108 708 75 HOH HOH . J 7 HOH A 109 709 141 HOH HOH . J 7 HOH A 110 710 196 HOH HOH . J 7 HOH A 111 711 9 HOH HOH . J 7 HOH A 112 712 123 HOH HOH . J 7 HOH A 113 713 165 HOH HOH . J 7 HOH A 114 714 140 HOH HOH . J 7 HOH A 115 715 190 HOH HOH . J 7 HOH A 116 716 116 HOH HOH . J 7 HOH A 117 717 87 HOH HOH . J 7 HOH A 118 718 92 HOH HOH . J 7 HOH A 119 719 57 HOH HOH . J 7 HOH A 120 720 88 HOH HOH . J 7 HOH A 121 721 5 HOH HOH . J 7 HOH A 122 722 113 HOH HOH . J 7 HOH A 123 723 84 HOH HOH . J 7 HOH A 124 724 47 HOH HOH . J 7 HOH A 125 725 23 HOH HOH . J 7 HOH A 126 726 122 HOH HOH . J 7 HOH A 127 727 138 HOH HOH . J 7 HOH A 128 728 50 HOH HOH . J 7 HOH A 129 729 133 HOH HOH . J 7 HOH A 130 730 166 HOH HOH . J 7 HOH A 131 731 70 HOH HOH . J 7 HOH A 132 732 19 HOH HOH . J 7 HOH A 133 733 157 HOH HOH . J 7 HOH A 134 734 33 HOH HOH . J 7 HOH A 135 735 106 HOH HOH . J 7 HOH A 136 736 117 HOH HOH . J 7 HOH A 137 737 154 HOH HOH . J 7 HOH A 138 738 125 HOH HOH . J 7 HOH A 139 739 198 HOH HOH . J 7 HOH A 140 740 192 HOH HOH . J 7 HOH A 141 741 55 HOH HOH . J 7 HOH A 142 742 67 HOH HOH . J 7 HOH A 143 743 65 HOH HOH . J 7 HOH A 144 744 13 HOH HOH . J 7 HOH A 145 745 68 HOH HOH . J 7 HOH A 146 746 90 HOH HOH . J 7 HOH A 147 747 72 HOH HOH . J 7 HOH A 148 748 159 HOH HOH . J 7 HOH A 149 749 169 HOH HOH . J 7 HOH A 150 750 151 HOH HOH . J 7 HOH A 151 751 194 HOH HOH . J 7 HOH A 152 752 38 HOH HOH . J 7 HOH A 153 753 191 HOH HOH . J 7 HOH A 154 754 52 HOH HOH . J 7 HOH A 155 755 1 HOH HOH . J 7 HOH A 156 756 30 HOH HOH . J 7 HOH A 157 757 24 HOH HOH . J 7 HOH A 158 758 98 HOH HOH . J 7 HOH A 159 759 127 HOH HOH . J 7 HOH A 160 760 64 HOH HOH . J 7 HOH A 161 761 15 HOH HOH . J 7 HOH A 162 762 56 HOH HOH . J 7 HOH A 163 763 104 HOH HOH . J 7 HOH A 164 764 58 HOH HOH . J 7 HOH A 165 765 60 HOH HOH . J 7 HOH A 166 766 78 HOH HOH . J 7 HOH A 167 767 22 HOH HOH . J 7 HOH A 168 768 80 HOH HOH . J 7 HOH A 169 769 36 HOH HOH . J 7 HOH A 170 770 186 HOH HOH . J 7 HOH A 171 771 18 HOH HOH . J 7 HOH A 172 772 121 HOH HOH . J 7 HOH A 173 773 178 HOH HOH . J 7 HOH A 174 774 14 HOH HOH . J 7 HOH A 175 775 114 HOH HOH . J 7 HOH A 176 776 89 HOH HOH . J 7 HOH A 177 777 182 HOH HOH . J 7 HOH A 178 778 101 HOH HOH . J 7 HOH A 179 779 111 HOH HOH . J 7 HOH A 180 780 176 HOH HOH . J 7 HOH A 181 781 145 HOH HOH . J 7 HOH A 182 782 146 HOH HOH . J 7 HOH A 183 783 200 HOH HOH . J 7 HOH A 184 784 143 HOH HOH . J 7 HOH A 185 785 152 HOH HOH . J 7 HOH A 186 786 86 HOH HOH . J 7 HOH A 187 787 185 HOH HOH . J 7 HOH A 188 788 167 HOH HOH . J 7 HOH A 189 789 161 HOH HOH . J 7 HOH A 190 790 195 HOH HOH . J 7 HOH A 191 791 126 HOH HOH . J 7 HOH A 192 792 103 HOH HOH . J 7 HOH A 193 793 164 HOH HOH . J 7 HOH A 194 794 135 HOH HOH . J 7 HOH A 195 795 136 HOH HOH . J 7 HOH A 196 796 129 HOH HOH . J 7 HOH A 197 797 112 HOH HOH . J 7 HOH A 198 798 162 HOH HOH . J 7 HOH A 199 799 16 HOH HOH . J 7 HOH A 200 800 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 TCE . . . I 6 30.689 -18.72 -37.896 1 88.79 ? O16 TCE 508 A 1 HETATM 2 C C14 TCE . . . I 6 31.236 -19.57 -37.144 1 86.14 ? C14 TCE 508 A 1 HETATM 3 O O15 TCE . . . I 6 32.488 -19.715 -37.161 1 84.62 ? O15 TCE 508 A 1 HETATM 4 C C5 TCE . . . I 6 30.375 -20.423 -36.213 1 85.12 ? C5 TCE 508 A 1 HETATM 5 C C2 TCE . . . I 6 31.192 -21.452 -35.433 1 86.57 ? C2 TCE 508 A 1 HETATM 6 P P TCE . . . I 6 30.216 -22.374 -34.135 1 87.99 ? P TCE 508 A 1 HETATM 7 C C3 TCE . . . I 6 28.673 -21.46 -33.626 1 81.22 ? C3 TCE 508 A 1 HETATM 8 C C6 TCE . . . I 6 27.528 -21.662 -34.615 1 77.78 ? C6 TCE 508 A 1 HETATM 9 C C8 TCE . . . I 6 26.427 -20.609 -34.481 1 71.33 ? C8 TCE 508 A 1 HETATM 10 O O10 TCE . . . I 6 26.626 -19.4 -34.819 1 71.42 ? O10 TCE 508 A 1 HETATM 11 O O9 TCE . . . I 6 25.309 -20.975 -34.035 1 59.22 ? O9 TCE 508 A 1 HETATM 12 C C1 TCE . . . I 6 31.287 -22.608 -32.632 1 79.3 ? C1 TCE 508 A 1 HETATM 13 C C4 TCE . . . I 6 32.105 -23.891 -32.687 1 70.41 ? C4 TCE 508 A 1 HETATM 14 C C11 TCE . . . I 6 33.548 -23.615 -32.278 1 69.44 ? C11 TCE 508 A 1 HETATM 15 O O12 TCE . . . I 6 33.834 -23.318 -31.082 1 62.03 ? O12 TCE 508 A 1 HETATM 16 O O13 TCE . . . I 6 34.451 -23.68 -33.154 1 74.28 ? O13 TCE 508 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #