data_5W2S # _model_server_result.job_id mWL4SeKDJXjMO0ycUjFv0g _model_server_result.datetime_utc '2024-11-23 20:43:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5W2S # _exptl.entry_id 5W2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W2S _cell.length_a 77.038 _cell.length_b 77.038 _cell.length_c 145.807 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -97.204667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 332 A ASN 309 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc2 A OD1 ASN 332 A ASN 309 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc3 A O ALA 333 A ALA 310 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 A OE2 GLU 377 A GLU 354 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A OD1 ASN 422 A ASN 399 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 A O ASN 423 A ASN 400 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W2S _atom_sites.fract_transf_matrix[1][1] 0.012981 _atom_sites.fract_transf_matrix[1][2] 0.007494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 3 IPA A 1 502 1 IPA IPA . D 4 GOL A 1 503 1 GOL GOL . E 4 GOL A 1 504 2 GOL GOL . F 5 KMG A 1 505 1 KMG KMG . G 6 HOH A 1 601 33 HOH HOH . G 6 HOH A 2 602 41 HOH HOH . G 6 HOH A 3 603 62 HOH HOH . G 6 HOH A 4 604 78 HOH HOH . G 6 HOH A 5 605 54 HOH HOH . G 6 HOH A 6 606 31 HOH HOH . G 6 HOH A 7 607 45 HOH HOH . G 6 HOH A 8 608 48 HOH HOH . G 6 HOH A 9 609 44 HOH HOH . G 6 HOH A 10 610 42 HOH HOH . G 6 HOH A 11 611 46 HOH HOH . G 6 HOH A 12 612 16 HOH HOH . G 6 HOH A 13 613 79 HOH HOH . G 6 HOH A 14 614 77 HOH HOH . G 6 HOH A 15 615 7 HOH HOH . G 6 HOH A 16 616 5 HOH HOH . G 6 HOH A 17 617 23 HOH HOH . G 6 HOH A 18 618 64 HOH HOH . G 6 HOH A 19 619 26 HOH HOH . G 6 HOH A 20 620 20 HOH HOH . G 6 HOH A 21 621 25 HOH HOH . G 6 HOH A 22 622 21 HOH HOH . G 6 HOH A 23 623 8 HOH HOH . G 6 HOH A 24 624 43 HOH HOH . G 6 HOH A 25 625 36 HOH HOH . G 6 HOH A 26 626 53 HOH HOH . G 6 HOH A 27 627 60 HOH HOH . G 6 HOH A 28 628 66 HOH HOH . G 6 HOH A 29 629 67 HOH HOH . G 6 HOH A 30 630 32 HOH HOH . G 6 HOH A 31 631 35 HOH HOH . G 6 HOH A 32 632 72 HOH HOH . G 6 HOH A 33 633 18 HOH HOH . G 6 HOH A 34 634 75 HOH HOH . G 6 HOH A 35 635 55 HOH HOH . G 6 HOH A 36 636 49 HOH HOH . G 6 HOH A 37 637 14 HOH HOH . G 6 HOH A 38 638 15 HOH HOH . G 6 HOH A 39 639 1 HOH HOH . G 6 HOH A 40 640 63 HOH HOH . G 6 HOH A 41 641 51 HOH HOH . G 6 HOH A 42 642 9 HOH HOH . G 6 HOH A 43 643 58 HOH HOH . G 6 HOH A 44 644 50 HOH HOH . G 6 HOH A 45 645 10 HOH HOH . G 6 HOH A 46 646 37 HOH HOH . G 6 HOH A 47 647 65 HOH HOH . G 6 HOH A 48 648 70 HOH HOH . G 6 HOH A 49 649 38 HOH HOH . G 6 HOH A 50 650 17 HOH HOH . G 6 HOH A 51 651 11 HOH HOH . G 6 HOH A 52 652 76 HOH HOH . G 6 HOH A 53 653 61 HOH HOH . G 6 HOH A 54 654 3 HOH HOH . G 6 HOH A 55 655 57 HOH HOH . G 6 HOH A 56 656 73 HOH HOH . G 6 HOH A 57 657 74 HOH HOH . G 6 HOH A 58 658 19 HOH HOH . G 6 HOH A 59 659 59 HOH HOH . G 6 HOH A 60 660 47 HOH HOH . G 6 HOH A 61 661 69 HOH HOH . G 6 HOH A 62 662 29 HOH HOH . G 6 HOH A 63 663 6 HOH HOH . G 6 HOH A 64 664 28 HOH HOH . G 6 HOH A 65 665 2 HOH HOH . G 6 HOH A 66 666 12 HOH HOH . G 6 HOH A 67 667 13 HOH HOH . G 6 HOH A 68 668 56 HOH HOH . G 6 HOH A 69 669 39 HOH HOH . G 6 HOH A 70 670 30 HOH HOH . G 6 HOH A 71 671 52 HOH HOH . G 6 HOH A 72 672 22 HOH HOH . G 6 HOH A 73 673 71 HOH HOH . G 6 HOH A 74 674 24 HOH HOH . G 6 HOH A 75 675 27 HOH HOH . G 6 HOH A 76 676 68 HOH HOH . G 6 HOH A 77 677 34 HOH HOH . G 6 HOH A 78 678 4 HOH HOH . G 6 HOH A 79 679 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 30.592 _atom_site.Cartn_y -35.826 _atom_site.Cartn_z -30.863 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #