data_5W30 # _model_server_result.job_id 8gF8EZfT331kl1ggevzgTg _model_server_result.datetime_utc '2024-11-27 11:27:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5W30 # _exptl.entry_id 5W30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 271.111 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(bromomethyl)-2,5,6-trimethyl-1H,7H-pyrazolo[1,2-a]pyrazole-1,7-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W30 _cell.length_a 180.25 _cell.length_b 180.25 _cell.length_c 50.968 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 90.125 -156.101079 0 3 'crystal symmetry operation' 9_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 50.968 4 'crystal symmetry operation' 12_546 x,x-y-1,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 90.125 -156.101079 50.968 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 28 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 48 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id 9UM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 9UM _struct_conn.ptnr2_auth_seq_id 304 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.552 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H11 Br N2 O2' _chem_comp.formula_weight 271.111 _chem_comp.id 9UM _chem_comp.mon_nstd_flag . _chem_comp.name 3-(bromomethyl)-2,5,6-trimethyl-1H,7H-pyrazolo[1,2-a]pyrazole-1,7-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C4 9UM sing 1 n n C7 C5 9UM sing 2 n n C4 C5 9UM doub 3 n n C4 N1 9UM sing 4 n n C5 C6 9UM sing 5 n n N1 C3 9UM sing 6 n n N1 N2 9UM sing 7 n n C6 O2 9UM doub 8 n n C6 N2 9UM sing 9 n n C9 C3 9UM sing 10 n n C3 C2 9UM doub 11 n n N2 C1 9UM sing 12 n n C2 C1 9UM sing 13 n n C2 C10 9UM sing 14 n n C1 O1 9UM doub 15 n n C8 BR1 9UM sing 16 n n C7 H1 9UM sing 17 n n C7 H2 9UM sing 18 n n C7 H3 9UM sing 19 n n C8 H4 9UM sing 20 n n C8 H5 9UM sing 21 n n C9 H6 9UM sing 22 n n C9 H7 9UM sing 23 n n C9 H8 9UM sing 24 n n C10 H9 9UM sing 25 n n C10 H10 9UM sing 26 n n C10 H11 9UM sing 27 n n # _atom_sites.entry_id 5W30 _atom_sites.fract_transf_matrix[1][1] 0.005548 _atom_sites.fract_transf_matrix[1][2] 0.003203 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 301 1 UNL LFA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 9UM A 1 304 1 9UM MBB . F 5 HOH A 1 401 17 HOH HOH . F 5 HOH A 2 402 26 HOH HOH . F 5 HOH A 3 403 1 HOH HOH . F 5 HOH A 4 404 7 HOH HOH . F 5 HOH A 5 405 14 HOH HOH . F 5 HOH A 6 406 10 HOH HOH . F 5 HOH A 7 407 12 HOH HOH . F 5 HOH A 8 408 27 HOH HOH . F 5 HOH A 9 409 9 HOH HOH . F 5 HOH A 10 410 4 HOH HOH . F 5 HOH A 11 411 28 HOH HOH . F 5 HOH A 12 412 22 HOH HOH . F 5 HOH A 13 413 5 HOH HOH . F 5 HOH A 14 414 8 HOH HOH . F 5 HOH A 15 415 2 HOH HOH . F 5 HOH A 16 416 3 HOH HOH . F 5 HOH A 17 417 23 HOH HOH . F 5 HOH A 18 418 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9UM . . . E 4 22.439 -69.971 20.244 1 171.89 ? C1 9UM 304 A 1 HETATM 2 C C2 9UM . . . E 4 22.055 -71.343 20.19 1 176.19 ? C2 9UM 304 A 1 HETATM 3 C C3 9UM . . . E 4 21.198 -71.485 19.078 1 180.11 ? C3 9UM 304 A 1 HETATM 4 C C4 9UM . . . E 4 20.407 -69.52 17.412 1 170.68 ? C4 9UM 304 A 1 HETATM 5 C C5 9UM . . . E 4 20.782 -68.151 17.5 1 173.3 ? C5 9UM 304 A 1 HETATM 6 C C6 9UM . . . E 4 21.667 -68.038 18.614 1 179.96 ? C6 9UM 304 A 1 HETATM 7 C C7 9UM . . . E 4 20.338 -67.035 16.596 1 151.39 ? C7 9UM 304 A 1 HETATM 8 C C8 9UM . . . E 4 19.508 -70.14 16.401 1 150.39 ? C8 9UM 304 A 1 HETATM 9 C C9 9UM . . . E 4 20.545 -72.751 18.639 1 174.18 ? C9 9UM 304 A 1 HETATM 10 C C10 9UM . . . E 4 22.472 -72.451 21.116 1 161.42 ? C10 9UM 304 A 1 HETATM 11 N N1 9UM . . . E 4 21.034 -70.225 18.463 1 177.78 ? N1 9UM 304 A 1 HETATM 12 N N2 9UM . . . E 4 21.801 -69.307 19.188 1 176.28 ? N2 9UM 304 A 1 HETATM 13 O O1 9UM . . . E 4 23.177 -69.411 21.044 1 161.59 ? O1 9UM 304 A 1 HETATM 14 O O2 9UM . . . E 4 22.221 -67.038 19.06 1 195.63 ? O2 9UM 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 658 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #