data_5W31 # _model_server_result.job_id VDFrmeQaRCBvJyjBaLQDZw _model_server_result.datetime_utc '2024-11-08 05:59:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5W31 # _exptl.entry_id 5W31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.703 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURIBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W31 _cell.length_a 178.793 _cell.length_b 178.793 _cell.length_c 50.814 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.3965 -154.83928 0 3 'crystal symmetry operation' 9_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 50.814 4 'crystal symmetry operation' 12_546 x,x-y-1,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.3965 -154.83928 50.814 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 28 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 48 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id HG _struct_conn.ptnr2_label_comp_id MBO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MBO _struct_conn.ptnr2_auth_seq_id 304 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.356 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H5 Hg O2' _chem_comp.formula_weight 321.703 _chem_comp.id MBO _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURIBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG CE1 MBO sing 218 n n CE1 CE2 MBO sing 219 n y CE1 CE6 MBO doub 220 n y CE2 CE3 MBO doub 221 n y CE2 HE2 MBO sing 222 n n CE3 CE4 MBO sing 223 n y CE3 HE3 MBO sing 224 n n CE4 CE5 MBO doub 225 n y CE4 CZ MBO sing 226 n n CE5 CE6 MBO sing 227 n y CE5 HE5 MBO sing 228 n n CE6 HE6 MBO sing 229 n n CZ OZ1 MBO doub 230 n n CZ OZ2 MBO sing 231 n n OZ2 HZ2 MBO sing 232 n n # _atom_sites.entry_id 5W31 _atom_sites.fract_transf_matrix[1][1] 0.005593 _atom_sites.fract_transf_matrix[1][2] 0.003229 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 301 1 UNL LFA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 MBO A 1 304 1 MBO MBO . F 5 HOH A 1 401 17 HOH HOH . F 5 HOH A 2 402 26 HOH HOH . F 5 HOH A 3 403 7 HOH HOH . F 5 HOH A 4 404 1 HOH HOH . F 5 HOH A 5 405 9 HOH HOH . F 5 HOH A 6 406 14 HOH HOH . F 5 HOH A 7 407 22 HOH HOH . F 5 HOH A 8 408 27 HOH HOH . F 5 HOH A 9 409 10 HOH HOH . F 5 HOH A 10 410 4 HOH HOH . F 5 HOH A 11 411 5 HOH HOH . F 5 HOH A 12 412 12 HOH HOH . F 5 HOH A 13 413 2 HOH HOH . F 5 HOH A 14 414 3 HOH HOH . F 5 HOH A 15 415 8 HOH HOH . F 5 HOH A 16 416 23 HOH HOH . F 5 HOH A 17 417 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG MBO . . . E 4 21.53 -68.779 16.649 0.85 107.69 ? HG MBO 304 A 1 HETATM 2 C CE1 MBO . . . E 4 22.732 -67.967 18.428 0.85 115.8 ? CE1 MBO 304 A 1 HETATM 3 C CE2 MBO . . . E 4 24.091 -68.287 18.431 0.85 113.75 ? CE2 MBO 304 A 1 HETATM 4 C CE3 MBO . . . E 4 24.908 -67.833 19.456 0.85 114.03 ? CE3 MBO 304 A 1 HETATM 5 C CE4 MBO . . . E 4 24.367 -67.064 20.489 0.85 114.47 ? CE4 MBO 304 A 1 HETATM 6 C CE5 MBO . . . E 4 22.992 -66.733 20.494 0.85 113.66 ? CE5 MBO 304 A 1 HETATM 7 C CE6 MBO . . . E 4 22.162 -67.187 19.455 0.85 110.69 ? CE6 MBO 304 A 1 HETATM 8 C CZ MBO . . . E 4 25.319 -66.596 21.558 0.85 111.4 ? CZ MBO 304 A 1 HETATM 9 O OZ1 MBO . . . E 4 26.552 -66.839 21.431 0.85 98.63 ? OZ1 MBO 304 A 1 HETATM 10 O OZ2 MBO . . . E 4 24.862 -65.949 22.528 0.85 110.99 ? OZ2 MBO 304 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #