data_5W39 # _model_server_result.job_id -6NVXxJq2yhpmDurKLhKIQ _model_server_result.datetime_utc '2024-11-08 08:59:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5W39 # _exptl.entry_id 5W39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W39 _cell.length_a 178.242 _cell.length_b 178.242 _cell.length_c 50.599 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.121 -154.3621 0 3 'crystal symmetry operation' 9_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 50.599 4 'crystal symmetry operation' 12_546 x,x-y-1,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.121 -154.3621 50.599 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 221 n n C1 H11 LFA sing 222 n n C1 H12 LFA sing 223 n n C1 H13 LFA sing 224 n n C2 C3 LFA sing 225 n n C2 H21 LFA sing 226 n n C2 H22 LFA sing 227 n n C3 C4 LFA sing 228 n n C3 H31 LFA sing 229 n n C3 H32 LFA sing 230 n n C4 C5 LFA sing 231 n n C4 H41 LFA sing 232 n n C4 H42 LFA sing 233 n n C5 C6 LFA sing 234 n n C5 H51 LFA sing 235 n n C5 H52 LFA sing 236 n n C6 C7 LFA sing 237 n n C6 H61 LFA sing 238 n n C6 H62 LFA sing 239 n n C7 C8 LFA sing 240 n n C7 H71 LFA sing 241 n n C7 H72 LFA sing 242 n n C8 C9 LFA sing 243 n n C8 H81 LFA sing 244 n n C8 H82 LFA sing 245 n n C9 C10 LFA sing 246 n n C9 H91 LFA sing 247 n n C9 H92 LFA sing 248 n n C10 C11 LFA sing 249 n n C10 H101 LFA sing 250 n n C10 H102 LFA sing 251 n n C11 C12 LFA sing 252 n n C11 H111 LFA sing 253 n n C11 H112 LFA sing 254 n n C12 C13 LFA sing 255 n n C12 H121 LFA sing 256 n n C12 H122 LFA sing 257 n n C13 C14 LFA sing 258 n n C13 H131 LFA sing 259 n n C13 H132 LFA sing 260 n n C14 C15 LFA sing 261 n n C14 H141 LFA sing 262 n n C14 H142 LFA sing 263 n n C15 C16 LFA sing 264 n n C15 H151 LFA sing 265 n n C15 H152 LFA sing 266 n n C16 C17 LFA sing 267 n n C16 H161 LFA sing 268 n n C16 H162 LFA sing 269 n n C17 C18 LFA sing 270 n n C17 H171 LFA sing 271 n n C17 H172 LFA sing 272 n n C18 C19 LFA sing 273 n n C18 H181 LFA sing 274 n n C18 H182 LFA sing 275 n n C19 C20 LFA sing 276 n n C19 H191 LFA sing 277 n n C19 H192 LFA sing 278 n n C20 H201 LFA sing 279 n n C20 H202 LFA sing 280 n n C20 H203 LFA sing 281 n n # _atom_sites.entry_id 5W39 _atom_sites.fract_transf_matrix[1][1] 0.00561 _atom_sites.fract_transf_matrix[1][2] 0.003239 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 301 1 LFA LFA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 9UM A 1 304 1 9UM MBB . F 5 HOH A 1 401 25 HOH HOH . F 5 HOH A 2 402 17 HOH HOH . F 5 HOH A 3 403 6 HOH HOH . F 5 HOH A 4 404 7 HOH HOH . F 5 HOH A 5 405 19 HOH HOH . F 5 HOH A 6 406 14 HOH HOH . F 5 HOH A 7 407 27 HOH HOH . F 5 HOH A 8 408 1 HOH HOH . F 5 HOH A 9 409 26 HOH HOH . F 5 HOH A 10 410 22 HOH HOH . F 5 HOH A 11 411 9 HOH HOH . F 5 HOH A 12 412 10 HOH HOH . F 5 HOH A 13 413 5 HOH HOH . F 5 HOH A 14 414 4 HOH HOH . F 5 HOH A 15 415 12 HOH HOH . F 5 HOH A 16 416 15 HOH HOH . F 5 HOH A 17 417 2 HOH HOH . F 5 HOH A 18 418 11 HOH HOH . F 5 HOH A 19 419 8 HOH HOH . F 5 HOH A 20 420 20 HOH HOH . F 5 HOH A 21 421 3 HOH HOH . F 5 HOH A 22 422 18 HOH HOH . F 5 HOH A 23 423 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . B 2 19.782 -81.591 12.704 1 60.57 ? C1 LFA 301 A 1 HETATM 2 C C2 LFA . . . B 2 20.695 -80.393 13.089 1 76.08 ? C2 LFA 301 A 1 HETATM 3 C C3 LFA . . . B 2 22.205 -80.461 12.767 1 66.78 ? C3 LFA 301 A 1 HETATM 4 C C4 LFA . . . B 2 23.077 -79.282 13.268 1 65.01 ? C4 LFA 301 A 1 HETATM 5 C C5 LFA . . . B 2 24.572 -79.676 13.144 1 63.08 ? C5 LFA 301 A 1 HETATM 6 C C6 LFA . . . B 2 25.527 -78.523 12.811 1 67.52 ? C6 LFA 301 A 1 HETATM 7 C C7 LFA . . . B 2 27.042 -78.798 12.925 1 66.28 ? C7 LFA 301 A 1 HETATM 8 C C8 LFA . . . B 2 27.688 -77.487 13.436 1 67.96 ? C8 LFA 301 A 1 HETATM 9 C C9 LFA . . . B 2 29.229 -77.439 13.529 1 66.97 ? C9 LFA 301 A 1 HETATM 10 C C10 LFA . . . B 2 29.795 -76.043 13.917 1 66.48 ? C10 LFA 301 A 1 HETATM 11 C C11 LFA . . . B 2 31.343 -75.891 14.109 1 67.57 ? C11 LFA 301 A 1 HETATM 12 C C12 LFA . . . B 2 31.79 -74.501 14.637 1 62.56 ? C12 LFA 301 A 1 HETATM 13 C C13 LFA . . . B 2 33.293 -74.208 14.557 1 68.48 ? C13 LFA 301 A 1 HETATM 14 C C14 LFA . . . B 2 33.643 -72.784 15.051 1 83.25 ? C14 LFA 301 A 1 HETATM 15 C C15 LFA . . . B 2 35.025 -72.213 14.639 1 88.46 ? C15 LFA 301 A 1 HETATM 16 C C16 LFA . . . B 2 36.204 -72.502 15.589 1 93.49 ? C16 LFA 301 A 1 HETATM 17 C C17 LFA . . . B 2 37.57 -72.278 14.934 1 88.64 ? C17 LFA 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 17 #