data_5W3A # _model_server_result.job_id q7EnxmBdmPqzabygz7FvKw _model_server_result.datetime_utc '2024-11-23 19:02:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5W3A # _exptl.entry_id 5W3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.184 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-MERCAPTO-2-NITRO-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W3A _cell.length_a 180.329 _cell.length_b 180.329 _cell.length_c 50.566 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 90.1645 -156.169495 0 3 'crystal symmetry operation' 9_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 50.566 4 'crystal symmetry operation' 12_546 x,x-y-1,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 90.1645 -156.169495 50.566 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 162 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 182 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id S5 _struct_conn.ptnr2_label_comp_id MNB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MNB _struct_conn.ptnr2_auth_seq_id 304 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.994 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H5 N O4 S' _chem_comp.formula_weight 199.184 _chem_comp.id MNB _chem_comp.mon_nstd_flag . _chem_comp.name '5-MERCAPTO-2-NITRO-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 MNB doub 298 n y C6 C5 MNB sing 299 n y C6 HC6 MNB sing 300 n n C1 C2 MNB sing 301 n y C1 C10 MNB sing 302 n n C2 C3 MNB doub 303 n y C2 N7 MNB sing 304 n n C3 C4 MNB sing 305 n y C3 HC3 MNB sing 306 n n C4 C5 MNB doub 307 n y C4 HC4 MNB sing 308 n n C5 S5 MNB sing 309 n n S5 HS5 MNB sing 310 n n C10 O12 MNB sing 311 n n C10 O11 MNB doub 312 n n O12 H12 MNB sing 313 n n N7 O9 MNB doub 314 n n N7 O8 MNB sing 315 n n # _atom_sites.entry_id 5W3A _atom_sites.fract_transf_matrix[1][1] 0.005545 _atom_sites.fract_transf_matrix[1][2] 0.003202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 301 1 LFA LFA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 MNB A 1 304 1 MNB MNB . F 5 HOH A 1 401 25 HOH HOH . F 5 HOH A 2 402 17 HOH HOH . F 5 HOH A 3 403 1 HOH HOH . F 5 HOH A 4 404 19 HOH HOH . F 5 HOH A 5 405 12 HOH HOH . F 5 HOH A 6 406 7 HOH HOH . F 5 HOH A 7 407 22 HOH HOH . F 5 HOH A 8 408 26 HOH HOH . F 5 HOH A 9 409 14 HOH HOH . F 5 HOH A 10 410 10 HOH HOH . F 5 HOH A 11 411 4 HOH HOH . F 5 HOH A 12 412 5 HOH HOH . F 5 HOH A 13 413 11 HOH HOH . F 5 HOH A 14 414 27 HOH HOH . F 5 HOH A 15 415 2 HOH HOH . F 5 HOH A 16 416 18 HOH HOH . F 5 HOH A 17 417 8 HOH HOH . F 5 HOH A 18 418 3 HOH HOH . F 5 HOH A 19 419 9 HOH HOH . F 5 HOH A 20 420 15 HOH HOH . F 5 HOH A 21 421 20 HOH HOH . F 5 HOH A 22 422 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 MNB . . . E 4 19.275 -79.992 25.006 1 100.64 ? C6 MNB 304 A 1 HETATM 2 C C1 MNB . . . E 4 19.709 -80.441 26.243 1 109.66 ? C1 MNB 304 A 1 HETATM 3 C C2 MNB . . . E 4 18.823 -81.407 26.978 1 111.91 ? C2 MNB 304 A 1 HETATM 4 C C3 MNB . . . E 4 17.613 -81.824 26.426 1 99.04 ? C3 MNB 304 A 1 HETATM 5 C C4 MNB . . . E 4 17.245 -81.328 25.183 1 94.22 ? C4 MNB 304 A 1 HETATM 6 C C5 MNB . . . E 4 18.064 -80.439 24.494 1 88.93 ? C5 MNB 304 A 1 HETATM 7 S S5 MNB . . . E 4 17.567 -79.855 22.97 1 90.72 ? S5 MNB 304 A 1 HETATM 8 C C10 MNB . . . E 4 21.027 -79.928 26.767 1 107.61 ? C10 MNB 304 A 1 HETATM 9 O O12 MNB . . . E 4 21.036 -79.327 27.861 1 105.89 ? O12 MNB 304 A 1 HETATM 10 O O11 MNB . . . E 4 22.072 -80.087 26.095 1 106.66 ? O11 MNB 304 A 1 HETATM 11 N N7 MNB . . . E 4 19.174 -81.913 28.222 1 118.91 ? N7 MNB 304 A 1 HETATM 12 O O9 MNB . . . E 4 18.357 -81.852 29.121 1 127.23 ? O9 MNB 304 A 1 HETATM 13 O O8 MNB . . . E 4 20.437 -82.489 28.42 1 126.55 ? O8 MNB 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 13 #