data_5W3B # _model_server_result.job_id pAXHmxpedMleYohtlqEfnA _model_server_result.datetime_utc '2024-11-24 03:52:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5W3B # _exptl.entry_id 5W3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W3B _cell.length_a 179.065 _cell.length_b 179.065 _cell.length_c 50.648 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.5325 -155.074839 0 3 'crystal symmetry operation' 9_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 50.648 4 'crystal symmetry operation' 12_546 x,x-y-1,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.5325 -155.074839 50.648 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 136 A ASN 156 1_555 F HG MBO . A MBO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 A O LEU 161 A LEU 181 1_555 E HG MBO . A MBO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 194 n n C1 H11 LFA sing 195 n n C1 H12 LFA sing 196 n n C1 H13 LFA sing 197 n n C2 C3 LFA sing 198 n n C2 H21 LFA sing 199 n n C2 H22 LFA sing 200 n n C3 C4 LFA sing 201 n n C3 H31 LFA sing 202 n n C3 H32 LFA sing 203 n n C4 C5 LFA sing 204 n n C4 H41 LFA sing 205 n n C4 H42 LFA sing 206 n n C5 C6 LFA sing 207 n n C5 H51 LFA sing 208 n n C5 H52 LFA sing 209 n n C6 C7 LFA sing 210 n n C6 H61 LFA sing 211 n n C6 H62 LFA sing 212 n n C7 C8 LFA sing 213 n n C7 H71 LFA sing 214 n n C7 H72 LFA sing 215 n n C8 C9 LFA sing 216 n n C8 H81 LFA sing 217 n n C8 H82 LFA sing 218 n n C9 C10 LFA sing 219 n n C9 H91 LFA sing 220 n n C9 H92 LFA sing 221 n n C10 C11 LFA sing 222 n n C10 H101 LFA sing 223 n n C10 H102 LFA sing 224 n n C11 C12 LFA sing 225 n n C11 H111 LFA sing 226 n n C11 H112 LFA sing 227 n n C12 C13 LFA sing 228 n n C12 H121 LFA sing 229 n n C12 H122 LFA sing 230 n n C13 C14 LFA sing 231 n n C13 H131 LFA sing 232 n n C13 H132 LFA sing 233 n n C14 C15 LFA sing 234 n n C14 H141 LFA sing 235 n n C14 H142 LFA sing 236 n n C15 C16 LFA sing 237 n n C15 H151 LFA sing 238 n n C15 H152 LFA sing 239 n n C16 C17 LFA sing 240 n n C16 H161 LFA sing 241 n n C16 H162 LFA sing 242 n n C17 C18 LFA sing 243 n n C17 H171 LFA sing 244 n n C17 H172 LFA sing 245 n n C18 C19 LFA sing 246 n n C18 H181 LFA sing 247 n n C18 H182 LFA sing 248 n n C19 C20 LFA sing 249 n n C19 H191 LFA sing 250 n n C19 H192 LFA sing 251 n n C20 H201 LFA sing 252 n n C20 H202 LFA sing 253 n n C20 H203 LFA sing 254 n n # _atom_sites.entry_id 5W3B _atom_sites.fract_transf_matrix[1][1] 0.005585 _atom_sites.fract_transf_matrix[1][2] 0.003224 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 301 1 LFA LFA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 MBO A 1 304 1 MBO MBO . F 4 MBO A 1 305 2 MBO MBO . G 5 HOH A 1 401 25 HOH HOH . G 5 HOH A 2 402 17 HOH HOH . G 5 HOH A 3 403 6 HOH HOH . G 5 HOH A 4 404 14 HOH HOH . G 5 HOH A 5 405 7 HOH HOH . G 5 HOH A 6 406 19 HOH HOH . G 5 HOH A 7 407 9 HOH HOH . G 5 HOH A 8 408 10 HOH HOH . G 5 HOH A 9 409 1 HOH HOH . G 5 HOH A 10 410 22 HOH HOH . G 5 HOH A 11 411 12 HOH HOH . G 5 HOH A 12 412 5 HOH HOH . G 5 HOH A 13 413 4 HOH HOH . G 5 HOH A 14 414 20 HOH HOH . G 5 HOH A 15 415 15 HOH HOH . G 5 HOH A 16 416 3 HOH HOH . G 5 HOH A 17 417 11 HOH HOH . G 5 HOH A 18 418 8 HOH HOH . G 5 HOH A 19 419 2 HOH HOH . G 5 HOH A 20 420 18 HOH HOH . G 5 HOH A 21 421 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . B 2 19.776 -82.052 12.737 1 50.26 ? C1 LFA 301 A 1 HETATM 2 C C2 LFA . . . B 2 20.699 -80.808 12.95 1 57.9 ? C2 LFA 301 A 1 HETATM 3 C C3 LFA . . . B 2 22.245 -80.98 12.952 1 59.17 ? C3 LFA 301 A 1 HETATM 4 C C4 LFA . . . B 2 23.171 -79.778 13.308 1 57.82 ? C4 LFA 301 A 1 HETATM 5 C C5 LFA . . . B 2 24.669 -80.135 13.052 1 56.87 ? C5 LFA 301 A 1 HETATM 6 C C6 LFA . . . B 2 25.652 -78.947 13.044 1 60.89 ? C6 LFA 301 A 1 HETATM 7 C C7 LFA . . . B 2 27.175 -79.217 13.086 1 55.33 ? C7 LFA 301 A 1 HETATM 8 C C8 LFA . . . B 2 27.857 -77.879 13.449 1 57.53 ? C8 LFA 301 A 1 HETATM 9 C C9 LFA . . . B 2 29.398 -77.831 13.621 1 58.42 ? C9 LFA 301 A 1 HETATM 10 C C10 LFA . . . B 2 29.946 -76.387 13.866 1 59.72 ? C10 LFA 301 A 1 HETATM 11 C C11 LFA . . . B 2 31.463 -76.189 14.172 1 63.73 ? C11 LFA 301 A 1 HETATM 12 C C12 LFA . . . B 2 31.887 -74.777 14.662 1 66.18 ? C12 LFA 301 A 1 HETATM 13 C C13 LFA . . . B 2 33.397 -74.481 14.535 1 73.51 ? C13 LFA 301 A 1 HETATM 14 C C14 LFA . . . B 2 33.884 -73.104 15.067 1 81.78 ? C14 LFA 301 A 1 HETATM 15 C C15 LFA . . . B 2 35.241 -72.577 14.511 1 88.85 ? C15 LFA 301 A 1 HETATM 16 C C16 LFA . . . B 2 36.393 -72.373 15.518 1 96.23 ? C16 LFA 301 A 1 HETATM 17 C C17 LFA . . . B 2 37.773 -72.699 14.942 1 88.77 ? C17 LFA 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #