data_5W3B # _model_server_result.job_id otrQfQlB5We4lmAX2PvoLw _model_server_result.datetime_utc '2024-11-24 03:28:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5W3B # _exptl.entry_id 5W3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.703 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURIBENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W3B _cell.length_a 179.065 _cell.length_b 179.065 _cell.length_c 50.648 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.5325 -155.074839 0 3 'crystal symmetry operation' 9_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 50.648 4 'crystal symmetry operation' 12_546 x,x-y-1,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.5325 -155.074839 50.648 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 136 A ASN 156 1_555 F HG MBO . A MBO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 A O LEU 161 A LEU 181 1_555 E HG MBO . A MBO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? # _chem_comp.formula 'C7 H5 Hg O2' _chem_comp.formula_weight 321.703 _chem_comp.id MBO _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURIBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG CE1 MBO sing 279 n n CE1 CE2 MBO sing 280 n y CE1 CE6 MBO doub 281 n y CE2 CE3 MBO doub 282 n y CE2 HE2 MBO sing 283 n n CE3 CE4 MBO sing 284 n y CE3 HE3 MBO sing 285 n n CE4 CE5 MBO doub 286 n y CE4 CZ MBO sing 287 n n CE5 CE6 MBO sing 288 n y CE5 HE5 MBO sing 289 n n CE6 HE6 MBO sing 290 n n CZ OZ1 MBO doub 291 n n CZ OZ2 MBO sing 292 n n OZ2 HZ2 MBO sing 293 n n # _atom_sites.entry_id 5W3B _atom_sites.fract_transf_matrix[1][1] 0.005585 _atom_sites.fract_transf_matrix[1][2] 0.003224 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 301 1 LFA LFA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 MBO A 1 304 1 MBO MBO . F 4 MBO A 1 305 2 MBO MBO . G 5 HOH A 1 401 25 HOH HOH . G 5 HOH A 2 402 17 HOH HOH . G 5 HOH A 3 403 6 HOH HOH . G 5 HOH A 4 404 14 HOH HOH . G 5 HOH A 5 405 7 HOH HOH . G 5 HOH A 6 406 19 HOH HOH . G 5 HOH A 7 407 9 HOH HOH . G 5 HOH A 8 408 10 HOH HOH . G 5 HOH A 9 409 1 HOH HOH . G 5 HOH A 10 410 22 HOH HOH . G 5 HOH A 11 411 12 HOH HOH . G 5 HOH A 12 412 5 HOH HOH . G 5 HOH A 13 413 4 HOH HOH . G 5 HOH A 14 414 20 HOH HOH . G 5 HOH A 15 415 15 HOH HOH . G 5 HOH A 16 416 3 HOH HOH . G 5 HOH A 17 417 11 HOH HOH . G 5 HOH A 18 418 8 HOH HOH . G 5 HOH A 19 419 2 HOH HOH . G 5 HOH A 20 420 18 HOH HOH . G 5 HOH A 21 421 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG MBO . . . E 4 21.774 -80.033 23.269 0.5 75.33 ? HG MBO 304 A 1 HETATM 2 C CE1 MBO . . . E 4 21.885 -81.92 24.551 0.5 67.17 ? CE1 MBO 304 A 1 HETATM 3 C CE2 MBO . . . E 4 21.312 -81.92 25.828 0.5 63.68 ? CE2 MBO 304 A 1 HETATM 4 C CE3 MBO . . . E 4 21.395 -83.071 26.588 0.5 69.16 ? CE3 MBO 304 A 1 HETATM 5 C CE4 MBO . . . E 4 22.042 -84.195 26.062 0.5 71.41 ? CE4 MBO 304 A 1 HETATM 6 C CE5 MBO . . . E 4 22.608 -84.182 24.782 0.5 66.71 ? CE5 MBO 304 A 1 HETATM 7 C CE6 MBO . . . E 4 22.536 -83.028 24.02 0.5 63.22 ? CE6 MBO 304 A 1 HETATM 8 C CZ MBO . . . E 4 22.121 -85.444 26.89 0.5 69.12 ? CZ MBO 304 A 1 HETATM 9 O OZ1 MBO . . . E 4 22.828 -86.405 26.508 0.5 68.07 ? OZ1 MBO 304 A 1 HETATM 10 O OZ2 MBO . . . E 4 21.463 -85.481 27.945 0.5 64.58 ? OZ2 MBO 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #