data_5W3C # _model_server_result.job_id pozlkav8eR3nz7FdcjMG1w _model_server_result.datetime_utc '2024-11-08 05:42:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5W3C # _exptl.entry_id 5W3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.053 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SELENOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W3C _cell.length_a 180.341 _cell.length_b 180.341 _cell.length_c 50.588 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 90.1705 -156.179887 0 3 'crystal symmetry operation' 9_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 50.588 4 'crystal symmetry operation' 12_546 x,x-y-1,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 90.1705 -156.179887 50.588 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 162 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 182 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id SE _struct_conn.ptnr2_label_comp_id SEC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SEC _struct_conn.ptnr2_auth_seq_id 304 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.039 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H7 N O2 Se' _chem_comp.formula_weight 168.053 _chem_comp.id SEC _chem_comp.mon_nstd_flag y _chem_comp.name SELENOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SEC sing 338 n n N H SEC sing 339 n n N H2 SEC sing 340 n n CA CB SEC sing 341 n n CA C SEC sing 342 n n CA HA SEC sing 343 n n CB SE SEC sing 344 n n CB HB2 SEC sing 345 n n CB HB3 SEC sing 346 n n SE HE SEC sing 347 n n C O SEC doub 348 n n C OXT SEC sing 349 n n OXT HXT SEC sing 350 n n # _atom_sites.entry_id 5W3C _atom_sites.fract_transf_matrix[1][1] 0.005545 _atom_sites.fract_transf_matrix[1][2] 0.003201 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 301 1 LFA LFA . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 SEC A 1 304 1 SEC SEC . F 5 HOH A 1 401 26 HOH HOH . F 5 HOH A 2 402 17 HOH HOH . F 5 HOH A 3 403 12 HOH HOH . F 5 HOH A 4 404 25 HOH HOH . F 5 HOH A 5 405 7 HOH HOH . F 5 HOH A 6 406 22 HOH HOH . F 5 HOH A 7 407 10 HOH HOH . F 5 HOH A 8 408 14 HOH HOH . F 5 HOH A 9 409 11 HOH HOH . F 5 HOH A 10 410 2 HOH HOH . F 5 HOH A 11 411 4 HOH HOH . F 5 HOH A 12 412 5 HOH HOH . F 5 HOH A 13 413 9 HOH HOH . F 5 HOH A 14 414 28 HOH HOH . F 5 HOH A 15 415 8 HOH HOH . F 5 HOH A 16 416 18 HOH HOH . F 5 HOH A 17 417 3 HOH HOH . F 5 HOH A 18 418 21 HOH HOH . F 5 HOH A 19 419 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SEC . . . E 4 16.785 -79.927 26.519 1 109.62 ? N SEC 304 A 1 HETATM 2 C CA SEC . . . E 4 18.226 -80.315 26.421 1 114.91 ? CA SEC 304 A 1 HETATM 3 C CB SEC . . . E 4 18.473 -81.148 25.147 1 112.65 ? CB SEC 304 A 1 HETATM 4 SE SE SEC . . . E 4 17.852 -80.24 23.521 1 100.41 ? SE SEC 304 A 1 HETATM 5 C C SEC . . . E 4 19.068 -79.061 26.477 1 124.68 ? C SEC 304 A 1 HETATM 6 O O SEC . . . E 4 19.705 -78.655 25.5 1 127.4 ? O SEC 304 A 1 HETATM 7 O OXT SEC . . . E 4 19.145 -78.392 27.514 1 132.52 ? OXT SEC 304 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #