data_5W3I # _model_server_result.job_id 2O669Xte158ccFzIo0wZuA _model_server_result.datetime_utc '2024-11-13 20:44:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5W3I # _exptl.entry_id 5W3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5W3I _cell.length_a 61.162 _cell.length_b 61.162 _cell.length_c 94.813 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A OE2 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 A OD1 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 A OD2 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc5 A OE1 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc7 B MN MN . A MN 301 1_555 E O02 GY5 . A GY5 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc8 B MN MN . A MN 301 1_555 E O01 GY5 . A GY5 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc9 C MN MN . A MN 302 1_555 E O01 GY5 . A GY5 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 C MN MN . A MN 302 1_555 E O03 GY5 . A GY5 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc11 C MN MN . A MN 302 1_555 F O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc12 C MN MN . A MN 302 1_555 F O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W3I _atom_sites.fract_transf_matrix[1][1] 0.01635 _atom_sites.fract_transf_matrix[1][2] 0.00944 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 201 MN MN . C 2 MN A 1 302 202 MN MN . D 3 GOL A 1 303 1 GOL GOL . E 4 GY5 A 1 304 1 GY5 GY5 . F 5 HOH A 1 401 3 HOH HOH . F 5 HOH A 2 402 177 HOH HOH . F 5 HOH A 3 403 171 HOH HOH . F 5 HOH A 4 404 29 HOH HOH . F 5 HOH A 5 405 110 HOH HOH . F 5 HOH A 6 406 34 HOH HOH . F 5 HOH A 7 407 13 HOH HOH . F 5 HOH A 8 408 39 HOH HOH . F 5 HOH A 9 409 4 HOH HOH . F 5 HOH A 10 410 176 HOH HOH . F 5 HOH A 11 411 5 HOH HOH . F 5 HOH A 12 412 37 HOH HOH . F 5 HOH A 13 413 21 HOH HOH . F 5 HOH A 14 414 123 HOH HOH . F 5 HOH A 15 415 64 HOH HOH . F 5 HOH A 16 416 168 HOH HOH . F 5 HOH A 17 417 19 HOH HOH . F 5 HOH A 18 418 65 HOH HOH . F 5 HOH A 19 419 57 HOH HOH . F 5 HOH A 20 420 6 HOH HOH . F 5 HOH A 21 421 8 HOH HOH . F 5 HOH A 22 422 41 HOH HOH . F 5 HOH A 23 423 11 HOH HOH . F 5 HOH A 24 424 18 HOH HOH . F 5 HOH A 25 425 66 HOH HOH . F 5 HOH A 26 426 10 HOH HOH . F 5 HOH A 27 427 169 HOH HOH . F 5 HOH A 28 428 9 HOH HOH . F 5 HOH A 29 429 15 HOH HOH . F 5 HOH A 30 430 174 HOH HOH . F 5 HOH A 31 431 1 HOH HOH . F 5 HOH A 32 432 23 HOH HOH . F 5 HOH A 33 433 62 HOH HOH . F 5 HOH A 34 434 38 HOH HOH . F 5 HOH A 35 435 181 HOH HOH . F 5 HOH A 36 436 175 HOH HOH . F 5 HOH A 37 437 61 HOH HOH . F 5 HOH A 38 438 97 HOH HOH . F 5 HOH A 39 439 22 HOH HOH . F 5 HOH A 40 440 167 HOH HOH . F 5 HOH A 41 441 173 HOH HOH . F 5 HOH A 42 442 84 HOH HOH . F 5 HOH A 43 443 51 HOH HOH . F 5 HOH A 44 444 16 HOH HOH . F 5 HOH A 45 445 170 HOH HOH . F 5 HOH A 46 446 26 HOH HOH . F 5 HOH A 47 447 27 HOH HOH . F 5 HOH A 48 448 25 HOH HOH . F 5 HOH A 49 449 35 HOH HOH . F 5 HOH A 50 450 172 HOH HOH . F 5 HOH A 51 451 20 HOH HOH . F 5 HOH A 52 452 45 HOH HOH . F 5 HOH A 53 453 72 HOH HOH . F 5 HOH A 54 454 178 HOH HOH . F 5 HOH A 55 455 2 HOH HOH . F 5 HOH A 56 456 125 HOH HOH . F 5 HOH A 57 457 166 HOH HOH . F 5 HOH A 58 458 12 HOH HOH . F 5 HOH A 59 459 14 HOH HOH . F 5 HOH A 60 460 179 HOH HOH . F 5 HOH A 61 461 17 HOH HOH . F 5 HOH A 62 462 99 HOH HOH . F 5 HOH A 63 463 180 HOH HOH . F 5 HOH A 64 464 148 HOH HOH . F 5 HOH A 65 465 56 HOH HOH . F 5 HOH A 66 466 52 HOH HOH . F 5 HOH A 67 467 42 HOH HOH . F 5 HOH A 68 468 48 HOH HOH . F 5 HOH A 69 469 50 HOH HOH . F 5 HOH A 70 470 33 HOH HOH . F 5 HOH A 71 471 28 HOH HOH . F 5 HOH A 72 472 96 HOH HOH . F 5 HOH A 73 473 49 HOH HOH . F 5 HOH A 74 474 157 HOH HOH . F 5 HOH A 75 475 164 HOH HOH . F 5 HOH A 76 476 156 HOH HOH . F 5 HOH A 77 477 165 HOH HOH . F 5 HOH A 78 478 75 HOH HOH . F 5 HOH A 79 479 154 HOH HOH . F 5 HOH A 80 480 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.591 _atom_site.Cartn_y -16.753 _atom_site.Cartn_z 4.059 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #