data_5W4F # _model_server_result.job_id Kl0v_HeGkOzcWLEjubfKUQ _model_server_result.datetime_utc '2025-08-29 02:48:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5W4F # _exptl.entry_id 5W4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W4F _cell.length_a 79.005 _cell.length_b 89.819 _cell.length_c 99.541 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5W4F _atom_sites.fract_transf_matrix[1][1] 0.012657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL B 1 601 1 GOL GOL . E 3 GOL B 1 602 3 GOL GOL . F 4 HOH B 1 701 61 HOH HOH . F 4 HOH B 2 702 301 HOH HOH . F 4 HOH B 3 703 17 HOH HOH . F 4 HOH B 4 704 323 HOH HOH . F 4 HOH B 5 705 242 HOH HOH . F 4 HOH B 6 706 119 HOH HOH . F 4 HOH B 7 707 229 HOH HOH . F 4 HOH B 8 708 102 HOH HOH . F 4 HOH B 9 709 65 HOH HOH . F 4 HOH B 10 710 337 HOH HOH . F 4 HOH B 11 711 140 HOH HOH . F 4 HOH B 12 712 302 HOH HOH . F 4 HOH B 13 713 133 HOH HOH . F 4 HOH B 14 714 30 HOH HOH . F 4 HOH B 15 715 167 HOH HOH . F 4 HOH B 16 716 37 HOH HOH . F 4 HOH B 17 717 346 HOH HOH . F 4 HOH B 18 718 274 HOH HOH . F 4 HOH B 19 719 112 HOH HOH . F 4 HOH B 20 720 14 HOH HOH . F 4 HOH B 21 721 226 HOH HOH . F 4 HOH B 22 722 49 HOH HOH . F 4 HOH B 23 723 80 HOH HOH . F 4 HOH B 24 724 199 HOH HOH . F 4 HOH B 25 725 120 HOH HOH . F 4 HOH B 26 726 128 HOH HOH . F 4 HOH B 27 727 79 HOH HOH . F 4 HOH B 28 728 18 HOH HOH . F 4 HOH B 29 729 160 HOH HOH . F 4 HOH B 30 730 39 HOH HOH . F 4 HOH B 31 731 186 HOH HOH . F 4 HOH B 32 732 180 HOH HOH . F 4 HOH B 33 733 104 HOH HOH . F 4 HOH B 34 734 171 HOH HOH . F 4 HOH B 35 735 195 HOH HOH . F 4 HOH B 36 736 25 HOH HOH . F 4 HOH B 37 737 73 HOH HOH . F 4 HOH B 38 738 41 HOH HOH . F 4 HOH B 39 739 179 HOH HOH . F 4 HOH B 40 740 129 HOH HOH . F 4 HOH B 41 741 145 HOH HOH . F 4 HOH B 42 742 9 HOH HOH . F 4 HOH B 43 743 306 HOH HOH . F 4 HOH B 44 744 144 HOH HOH . F 4 HOH B 45 745 181 HOH HOH . F 4 HOH B 46 746 76 HOH HOH . F 4 HOH B 47 747 315 HOH HOH . F 4 HOH B 48 748 255 HOH HOH . F 4 HOH B 49 749 350 HOH HOH . F 4 HOH B 50 750 115 HOH HOH . F 4 HOH B 51 751 5 HOH HOH . F 4 HOH B 52 752 141 HOH HOH . F 4 HOH B 53 753 66 HOH HOH . F 4 HOH B 54 754 134 HOH HOH . F 4 HOH B 55 755 38 HOH HOH . F 4 HOH B 56 756 277 HOH HOH . F 4 HOH B 57 757 20 HOH HOH . F 4 HOH B 58 758 312 HOH HOH . F 4 HOH B 59 759 212 HOH HOH . F 4 HOH B 60 760 4 HOH HOH . F 4 HOH B 61 761 51 HOH HOH . F 4 HOH B 62 762 114 HOH HOH . F 4 HOH B 63 763 217 HOH HOH . F 4 HOH B 64 764 100 HOH HOH . F 4 HOH B 65 765 113 HOH HOH . F 4 HOH B 66 766 12 HOH HOH . F 4 HOH B 67 767 150 HOH HOH . F 4 HOH B 68 768 183 HOH HOH . F 4 HOH B 69 769 280 HOH HOH . F 4 HOH B 70 770 275 HOH HOH . F 4 HOH B 71 771 310 HOH HOH . F 4 HOH B 72 772 314 HOH HOH . F 4 HOH B 73 773 205 HOH HOH . F 4 HOH B 74 774 185 HOH HOH . F 4 HOH B 75 775 40 HOH HOH . F 4 HOH B 76 776 70 HOH HOH . F 4 HOH B 77 777 6 HOH HOH . F 4 HOH B 78 778 220 HOH HOH . F 4 HOH B 79 779 78 HOH HOH . F 4 HOH B 80 780 307 HOH HOH . F 4 HOH B 81 781 163 HOH HOH . F 4 HOH B 82 782 309 HOH HOH . F 4 HOH B 83 783 47 HOH HOH . F 4 HOH B 84 784 34 HOH HOH . F 4 HOH B 85 785 290 HOH HOH . F 4 HOH B 86 786 308 HOH HOH . F 4 HOH B 87 787 282 HOH HOH . F 4 HOH B 88 788 268 HOH HOH . F 4 HOH B 89 789 27 HOH HOH . F 4 HOH B 90 790 77 HOH HOH . F 4 HOH B 91 791 1 HOH HOH . F 4 HOH B 92 792 161 HOH HOH . F 4 HOH B 93 793 209 HOH HOH . F 4 HOH B 94 794 355 HOH HOH . F 4 HOH B 95 795 300 HOH HOH . F 4 HOH B 96 796 187 HOH HOH . F 4 HOH B 97 797 158 HOH HOH . F 4 HOH B 98 798 170 HOH HOH . F 4 HOH B 99 799 272 HOH HOH . F 4 HOH B 100 800 52 HOH HOH . F 4 HOH B 101 801 143 HOH HOH . F 4 HOH B 102 802 3 HOH HOH . F 4 HOH B 103 803 333 HOH HOH . F 4 HOH B 104 804 123 HOH HOH . F 4 HOH B 105 805 2 HOH HOH . F 4 HOH B 106 806 15 HOH HOH . F 4 HOH B 107 807 11 HOH HOH . F 4 HOH B 108 808 165 HOH HOH . F 4 HOH B 109 809 68 HOH HOH . F 4 HOH B 110 810 63 HOH HOH . F 4 HOH B 111 811 130 HOH HOH . F 4 HOH B 112 812 159 HOH HOH . F 4 HOH B 113 813 122 HOH HOH . F 4 HOH B 114 814 169 HOH HOH . F 4 HOH B 115 815 336 HOH HOH . F 4 HOH B 116 816 116 HOH HOH . F 4 HOH B 117 817 326 HOH HOH . F 4 HOH B 118 818 89 HOH HOH . F 4 HOH B 119 819 83 HOH HOH . F 4 HOH B 120 820 234 HOH HOH . F 4 HOH B 121 821 283 HOH HOH . F 4 HOH B 122 822 84 HOH HOH . F 4 HOH B 123 823 48 HOH HOH . F 4 HOH B 124 824 166 HOH HOH . F 4 HOH B 125 825 236 HOH HOH . F 4 HOH B 126 826 322 HOH HOH . F 4 HOH B 127 827 325 HOH HOH . F 4 HOH B 128 828 16 HOH HOH . F 4 HOH B 129 829 330 HOH HOH . F 4 HOH B 130 830 153 HOH HOH . F 4 HOH B 131 831 338 HOH HOH . F 4 HOH B 132 832 56 HOH HOH . F 4 HOH B 133 833 99 HOH HOH . F 4 HOH B 134 834 97 HOH HOH . F 4 HOH B 135 835 45 HOH HOH . F 4 HOH B 136 836 175 HOH HOH . F 4 HOH B 137 837 98 HOH HOH . F 4 HOH B 138 838 125 HOH HOH . F 4 HOH B 139 839 215 HOH HOH . F 4 HOH B 140 840 13 HOH HOH . F 4 HOH B 141 841 21 HOH HOH . F 4 HOH B 142 842 91 HOH HOH . F 4 HOH B 143 843 117 HOH HOH . F 4 HOH B 144 844 124 HOH HOH . F 4 HOH B 145 845 43 HOH HOH . F 4 HOH B 146 846 67 HOH HOH . F 4 HOH B 147 847 7 HOH HOH . F 4 HOH B 148 848 103 HOH HOH . F 4 HOH B 149 849 23 HOH HOH . F 4 HOH B 150 850 26 HOH HOH . F 4 HOH B 151 851 69 HOH HOH . F 4 HOH B 152 852 10 HOH HOH . F 4 HOH B 153 853 96 HOH HOH . F 4 HOH B 154 854 211 HOH HOH . F 4 HOH B 155 855 197 HOH HOH . F 4 HOH B 156 856 22 HOH HOH . F 4 HOH B 157 857 85 HOH HOH . F 4 HOH B 158 858 356 HOH HOH . F 4 HOH B 159 859 57 HOH HOH . F 4 HOH B 160 860 44 HOH HOH . F 4 HOH B 161 861 206 HOH HOH . F 4 HOH B 162 862 214 HOH HOH . F 4 HOH B 163 863 74 HOH HOH . F 4 HOH B 164 864 254 HOH HOH . F 4 HOH B 165 865 230 HOH HOH . F 4 HOH B 166 866 106 HOH HOH . F 4 HOH B 167 867 168 HOH HOH . F 4 HOH B 168 868 29 HOH HOH . F 4 HOH B 169 869 313 HOH HOH . F 4 HOH B 170 870 32 HOH HOH . F 4 HOH B 171 871 131 HOH HOH . F 4 HOH B 172 872 8 HOH HOH . F 4 HOH B 173 873 46 HOH HOH . F 4 HOH B 174 874 53 HOH HOH . F 4 HOH B 175 875 304 HOH HOH . F 4 HOH B 176 876 111 HOH HOH . F 4 HOH B 177 877 151 HOH HOH . F 4 HOH B 178 878 190 HOH HOH . F 4 HOH B 179 879 87 HOH HOH . F 4 HOH B 180 880 296 HOH HOH . F 4 HOH B 181 881 55 HOH HOH . F 4 HOH B 182 882 72 HOH HOH . F 4 HOH B 183 883 71 HOH HOH . F 4 HOH B 184 884 31 HOH HOH . F 4 HOH B 185 885 344 HOH HOH . F 4 HOH B 186 886 303 HOH HOH . F 4 HOH B 187 887 101 HOH HOH . F 4 HOH B 188 888 121 HOH HOH . F 4 HOH B 189 889 188 HOH HOH . F 4 HOH B 190 890 64 HOH HOH . F 4 HOH B 191 891 28 HOH HOH . F 4 HOH B 192 892 19 HOH HOH . F 4 HOH B 193 893 198 HOH HOH . F 4 HOH B 194 894 332 HOH HOH . F 4 HOH B 195 895 24 HOH HOH . F 4 HOH B 196 896 86 HOH HOH . F 4 HOH B 197 897 349 HOH HOH . F 4 HOH B 198 898 136 HOH HOH . F 4 HOH B 199 899 90 HOH HOH . F 4 HOH B 200 900 318 HOH HOH . F 4 HOH B 201 901 105 HOH HOH . F 4 HOH B 202 902 319 HOH HOH . F 4 HOH B 203 903 152 HOH HOH . F 4 HOH B 204 904 231 HOH HOH . F 4 HOH B 205 905 35 HOH HOH . F 4 HOH B 206 906 252 HOH HOH . F 4 HOH B 207 907 305 HOH HOH . F 4 HOH B 208 908 353 HOH HOH . F 4 HOH B 209 909 311 HOH HOH . F 4 HOH B 210 910 94 HOH HOH . F 4 HOH B 211 911 162 HOH HOH . F 4 HOH B 212 912 107 HOH HOH . F 4 HOH B 213 913 138 HOH HOH . F 4 HOH B 214 914 82 HOH HOH . F 4 HOH B 215 915 354 HOH HOH . F 4 HOH B 216 916 329 HOH HOH . F 4 HOH B 217 917 240 HOH HOH . F 4 HOH B 218 918 118 HOH HOH . F 4 HOH B 219 919 36 HOH HOH . F 4 HOH B 220 920 343 HOH HOH . F 4 HOH B 221 921 238 HOH HOH . F 4 HOH B 222 922 281 HOH HOH . F 4 HOH B 223 923 142 HOH HOH . F 4 HOH B 224 924 331 HOH HOH . F 4 HOH B 225 925 108 HOH HOH . F 4 HOH B 226 926 328 HOH HOH . F 4 HOH B 227 927 279 HOH HOH . F 4 HOH B 228 928 348 HOH HOH . F 4 HOH B 229 929 352 HOH HOH . F 4 HOH B 230 930 342 HOH HOH . F 4 HOH B 231 931 50 HOH HOH . F 4 HOH B 232 932 193 HOH HOH . F 4 HOH B 233 933 241 HOH HOH . F 4 HOH B 234 934 239 HOH HOH . F 4 HOH B 235 935 287 HOH HOH . F 4 HOH B 236 936 339 HOH HOH . F 4 HOH B 237 937 291 HOH HOH . F 4 HOH B 238 938 216 HOH HOH . F 4 HOH B 239 939 263 HOH HOH . F 4 HOH B 240 940 267 HOH HOH . F 4 HOH B 241 941 286 HOH HOH . F 4 HOH B 242 942 149 HOH HOH . F 4 HOH B 243 943 345 HOH HOH . F 4 HOH B 244 944 334 HOH HOH . F 4 HOH B 245 945 285 HOH HOH . F 4 HOH B 246 946 317 HOH HOH . F 4 HOH B 247 947 148 HOH HOH . F 4 HOH B 248 948 92 HOH HOH . F 4 HOH B 249 949 278 HOH HOH . F 4 HOH B 250 950 135 HOH HOH . F 4 HOH B 251 951 58 HOH HOH . F 4 HOH B 252 952 62 HOH HOH . F 4 HOH B 253 953 253 HOH HOH . F 4 HOH B 254 954 320 HOH HOH . F 4 HOH B 255 955 250 HOH HOH . F 4 HOH B 256 956 247 HOH HOH . F 4 HOH B 257 957 132 HOH HOH . F 4 HOH B 258 958 192 HOH HOH . F 4 HOH B 259 959 54 HOH HOH . F 4 HOH B 260 960 243 HOH HOH . F 4 HOH B 261 961 139 HOH HOH . F 4 HOH B 262 962 60 HOH HOH . F 4 HOH B 263 963 224 HOH HOH . F 4 HOH B 264 964 189 HOH HOH . F 4 HOH B 265 965 251 HOH HOH . F 4 HOH B 266 966 235 HOH HOH . F 4 HOH B 267 967 176 HOH HOH . F 4 HOH B 268 968 202 HOH HOH . F 4 HOH B 269 969 316 HOH HOH . F 4 HOH B 270 970 93 HOH HOH . F 4 HOH B 271 971 257 HOH HOH . F 4 HOH B 272 972 146 HOH HOH . F 4 HOH B 273 973 137 HOH HOH . F 4 HOH B 274 974 172 HOH HOH . F 4 HOH B 275 975 351 HOH HOH . F 4 HOH B 276 976 244 HOH HOH . F 4 HOH B 277 977 147 HOH HOH . F 4 HOH B 278 978 194 HOH HOH . F 4 HOH B 279 979 248 HOH HOH . F 4 HOH B 280 980 273 HOH HOH . F 4 HOH B 281 981 81 HOH HOH . F 4 HOH B 282 982 249 HOH HOH . F 4 HOH B 283 983 271 HOH HOH . F 4 HOH B 284 984 182 HOH HOH . F 4 HOH B 285 985 127 HOH HOH . F 4 HOH B 286 986 299 HOH HOH . F 4 HOH B 287 987 196 HOH HOH . F 4 HOH B 288 988 218 HOH HOH . F 4 HOH B 289 989 292 HOH HOH . F 4 HOH B 290 990 222 HOH HOH . F 4 HOH B 291 991 204 HOH HOH . F 4 HOH B 292 992 237 HOH HOH . F 4 HOH B 293 993 126 HOH HOH . F 4 HOH B 294 994 95 HOH HOH . F 4 HOH B 295 995 219 HOH HOH . F 4 HOH B 296 996 154 HOH HOH . F 4 HOH B 297 997 173 HOH HOH . F 4 HOH B 298 998 347 HOH HOH . F 4 HOH B 299 999 228 HOH HOH . F 4 HOH B 300 1000 155 HOH HOH . F 4 HOH B 301 1001 207 HOH HOH . F 4 HOH B 302 1002 191 HOH HOH . F 4 HOH B 303 1003 33 HOH HOH . F 4 HOH B 304 1004 184 HOH HOH . F 4 HOH B 305 1005 178 HOH HOH . F 4 HOH B 306 1006 174 HOH HOH . F 4 HOH B 307 1007 321 HOH HOH . G 4 HOH A 1 101 110 HOH HOH . G 4 HOH A 2 102 88 HOH HOH . G 4 HOH A 3 103 157 HOH HOH . G 4 HOH A 4 104 201 HOH HOH . G 4 HOH A 5 105 210 HOH HOH . G 4 HOH A 6 106 256 HOH HOH . G 4 HOH A 7 107 297 HOH HOH . G 4 HOH A 8 108 200 HOH HOH . H 4 HOH D 1 101 341 HOH HOH . H 4 HOH D 2 102 258 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -0.591 66.13 18.113 1 62.77 ? C1 GOL 601 B 1 HETATM 2 O O1 GOL . . . D 3 0.742 66.031 18.568 1 55.52 ? O1 GOL 601 B 1 HETATM 3 C C2 GOL . . . D 3 -0.589 66.402 16.611 1 69.92 ? C2 GOL 601 B 1 HETATM 4 O O2 GOL . . . D 3 0.645 65.995 16.057 1 55.89 ? O2 GOL 601 B 1 HETATM 5 C C3 GOL . . . D 3 -1.737 65.645 15.948 1 68.08 ? C3 GOL 601 B 1 HETATM 6 O O3 GOL . . . D 3 -1.601 65.673 14.542 1 66.21 ? O3 GOL 601 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #