data_5W4I
#
_model_server_result.job_id            7LZv4K12NKZAspM4LpsE6g 
_model_server_result.datetime_utc      '2024-11-12 20:41:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w4i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":103}' 
#
_entry.id    5W4I 
#
_exptl.entry_id    5W4I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5W4I 
_cell.length_a            67.746 
_cell.length_b            67.746 
_cell.length_c            67.746 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W4I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        207 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 67.746 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 67.746 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 
6 'crystal symmetry operation' 18_655 -x+1,z,y -1 0 0 0 0 1 0 1 0 67.746 0 0 
7 'crystal symmetry operation' 19_655 -x+1,-z,-y -1 0 0 0 0 -1 0 -1 0 67.746 0 0 
8 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE ORN 1 A ORN 1 1_555 A C VAL 16 A VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
covale ? covale2 A C ORN 1 A ORN 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale3 A C VAL 4 A VAL 4 1_555 A N MEA 5 A MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C MEA 5 A MEA 5 1_555 A N PHE 6 A PHE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C GLU 8 A GLU 8 1_555 A NE ORN 9 A ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale6 A C ORN 9 A ORN 9 1_555 A N ALA 10 A ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale7 B NE ORN 1 B ORN 1 1_555 B C VAL 16 B VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale8 B C ORN 1 B ORN 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
covale ? covale9 B C VAL 4 B VAL 4 1_555 B N MEA 5 B MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale10 B C MEA 5 B MEA 5 1_555 B N PHE 6 B PHE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 B C GLU 8 B GLU 8 1_555 B NE ORN 9 B ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? 
covale ? covale12 B C ORN 9 B ORN 9 1_555 B N ALA 10 B ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? 
covale ? covale13 C NE ORN 1 C ORN 1 1_555 C C VAL 16 C VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale14 C C ORN 1 C ORN 1 1_555 C N LYS 2 C LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
covale ? covale15 C C VAL 4 C VAL 4 1_555 C N MEA 5 C MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale16 C C MEA 5 C MEA 5 1_555 C N PHE 6 C PHE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale17 C C GLU 8 C GLU 8 1_555 C NE ORN 9 C ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? 
covale ? covale18 C C ORN 9 C ORN 9 1_555 C N ALA 10 C ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5W4I 
_atom_sites.fract_transf_matrix[1][1]    0.014761 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014761 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014761 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CL A 1 101 2 CL CL . 
E 2 CL A 1 102 3 CL CL . 
F 3 IOD A 1 103 2 IOD IOD . 
G 3 IOD A 1 104 3 IOD IOD . 
H 3 IOD A 1 105 6 IOD IOD . 
I 2 CL B 1 101 1 CL CL . 
J 3 IOD B 1 102 1 IOD IOD . 
K 3 IOD B 1 103 4 IOD IOD . 
L 4 HOH A 1 201 32 HOH HOH . 
L 4 HOH A 2 202 20 HOH HOH . 
L 4 HOH A 3 203 13 HOH HOH . 
L 4 HOH A 4 204 37 HOH HOH . 
L 4 HOH A 5 205 28 HOH HOH . 
L 4 HOH A 6 206 31 HOH HOH . 
L 4 HOH A 7 207 38 HOH HOH . 
L 4 HOH A 8 208 33 HOH HOH . 
L 4 HOH A 9 209 30 HOH HOH . 
M 4 HOH B 1 201 14 HOH HOH . 
M 4 HOH B 2 202 25 HOH HOH . 
M 4 HOH B 3 203 12 HOH HOH . 
M 4 HOH B 4 204 1 HOH HOH . 
M 4 HOH B 5 205 21 HOH HOH . 
M 4 HOH B 6 206 6 HOH HOH . 
M 4 HOH B 7 207 10 HOH HOH . 
M 4 HOH B 8 208 36 HOH HOH . 
M 4 HOH B 9 209 22 HOH HOH . 
M 4 HOH B 10 210 39 HOH HOH . 
M 4 HOH B 11 211 26 HOH HOH . 
M 4 HOH B 12 212 27 HOH HOH . 
M 4 HOH B 13 213 35 HOH HOH . 
N 4 HOH C 1 101 18 HOH HOH . 
N 4 HOH C 2 102 8 HOH HOH . 
N 4 HOH C 3 103 7 HOH HOH . 
N 4 HOH C 4 104 41 HOH HOH . 
N 4 HOH C 5 105 24 HOH HOH . 
N 4 HOH C 6 106 23 HOH HOH . 
N 4 HOH C 7 107 34 HOH HOH . 
N 4 HOH C 8 108 19 HOH HOH . 
N 4 HOH C 9 109 29 HOH HOH . 
N 4 HOH C 10 110 40 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               10.67 
_atom_site.Cartn_y               10.67 
_atom_site.Cartn_z               0 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        49.82 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           103 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#