data_5W4M
#
_model_server_result.job_id            P5F5Cw8UYlV_ruPE9dcEQA 
_model_server_result.datetime_utc      '2024-10-22 09:16:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5W4M 
#
_exptl.entry_id    5W4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5W4M 
_cell.length_a            174.982 
_cell.length_b            174.982 
_cell.length_c            57.63 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 L N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             46 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              46 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            J 
_struct_conn.ptnr2_label_atom_id            K 
_struct_conn.ptnr2_label_comp_id            K 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             K 
_struct_conn.ptnr2_auth_seq_id              303 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                3.418 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     5W4M 
_atom_sites.fract_transf_matrix[1][1]    0.005715 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 301 1 GOL GOL . 
D 3 SCN A 1 302 1 SCN SCN . 
E 3 SCN A 1 303 3 SCN SCN . 
F 4 DMS A 1 304 2 DMS DMS . 
G 4 DMS A 1 305 3 DMS DMS . 
H 5 K B 1 301 1 K K . 
I 5 K B 1 302 2 K K . 
J 5 K B 1 303 3 K K . 
K 6 CL B 1 304 1 CL CL . 
L 2 GOL B 1 305 2 GOL GOL . 
M 3 SCN B 1 306 2 SCN SCN . 
N 4 DMS B 1 307 1 DMS DMS . 
O 7 HOH A 1 401 54 HOH HOH . 
O 7 HOH A 2 402 72 HOH HOH . 
O 7 HOH A 3 403 31 HOH HOH . 
O 7 HOH A 4 404 40 HOH HOH . 
O 7 HOH A 5 405 44 HOH HOH . 
O 7 HOH A 6 406 83 HOH HOH . 
O 7 HOH A 7 407 93 HOH HOH . 
O 7 HOH A 8 408 67 HOH HOH . 
O 7 HOH A 9 409 57 HOH HOH . 
O 7 HOH A 10 410 81 HOH HOH . 
O 7 HOH A 11 411 86 HOH HOH . 
O 7 HOH A 12 412 94 HOH HOH . 
O 7 HOH A 13 413 71 HOH HOH . 
O 7 HOH A 14 414 35 HOH HOH . 
O 7 HOH A 15 415 5 HOH HOH . 
O 7 HOH A 16 416 77 HOH HOH . 
O 7 HOH A 17 417 78 HOH HOH . 
O 7 HOH A 18 418 43 HOH HOH . 
O 7 HOH A 19 419 25 HOH HOH . 
O 7 HOH A 20 420 21 HOH HOH . 
O 7 HOH A 21 421 79 HOH HOH . 
O 7 HOH A 22 422 11 HOH HOH . 
O 7 HOH A 23 423 82 HOH HOH . 
O 7 HOH A 24 424 63 HOH HOH . 
O 7 HOH A 25 425 2 HOH HOH . 
O 7 HOH A 26 426 62 HOH HOH . 
O 7 HOH A 27 427 7 HOH HOH . 
O 7 HOH A 28 428 51 HOH HOH . 
O 7 HOH A 29 429 14 HOH HOH . 
O 7 HOH A 30 430 96 HOH HOH . 
O 7 HOH A 31 431 26 HOH HOH . 
O 7 HOH A 32 432 38 HOH HOH . 
O 7 HOH A 33 433 66 HOH HOH . 
O 7 HOH A 34 434 46 HOH HOH . 
O 7 HOH A 35 435 60 HOH HOH . 
O 7 HOH A 36 436 49 HOH HOH . 
O 7 HOH A 37 437 32 HOH HOH . 
O 7 HOH A 38 438 98 HOH HOH . 
O 7 HOH A 39 439 59 HOH HOH . 
O 7 HOH A 40 440 29 HOH HOH . 
O 7 HOH A 41 441 27 HOH HOH . 
O 7 HOH A 42 442 41 HOH HOH . 
O 7 HOH A 43 443 6 HOH HOH . 
O 7 HOH A 44 444 55 HOH HOH . 
O 7 HOH A 45 445 56 HOH HOH . 
O 7 HOH A 46 446 58 HOH HOH . 
O 7 HOH A 47 447 37 HOH HOH . 
O 7 HOH A 48 448 75 HOH HOH . 
O 7 HOH A 49 449 99 HOH HOH . 
O 7 HOH A 50 450 47 HOH HOH . 
O 7 HOH A 51 451 24 HOH HOH . 
O 7 HOH A 52 452 64 HOH HOH . 
P 7 HOH B 1 401 53 HOH HOH . 
P 7 HOH B 2 402 48 HOH HOH . 
P 7 HOH B 3 403 9 HOH HOH . 
P 7 HOH B 4 404 34 HOH HOH . 
P 7 HOH B 5 405 4 HOH HOH . 
P 7 HOH B 6 406 19 HOH HOH . 
P 7 HOH B 7 407 22 HOH HOH . 
P 7 HOH B 8 408 28 HOH HOH . 
P 7 HOH B 9 409 3 HOH HOH . 
P 7 HOH B 10 410 20 HOH HOH . 
P 7 HOH B 11 411 84 HOH HOH . 
P 7 HOH B 12 412 88 HOH HOH . 
P 7 HOH B 13 413 15 HOH HOH . 
P 7 HOH B 14 414 89 HOH HOH . 
P 7 HOH B 15 415 85 HOH HOH . 
P 7 HOH B 16 416 69 HOH HOH . 
P 7 HOH B 17 417 90 HOH HOH . 
P 7 HOH B 18 418 10 HOH HOH . 
P 7 HOH B 19 419 45 HOH HOH . 
P 7 HOH B 20 420 80 HOH HOH . 
P 7 HOH B 21 421 36 HOH HOH . 
P 7 HOH B 22 422 8 HOH HOH . 
P 7 HOH B 23 423 18 HOH HOH . 
P 7 HOH B 24 424 70 HOH HOH . 
P 7 HOH B 25 425 17 HOH HOH . 
P 7 HOH B 26 426 39 HOH HOH . 
P 7 HOH B 27 427 23 HOH HOH . 
P 7 HOH B 28 428 68 HOH HOH . 
P 7 HOH B 29 429 16 HOH HOH . 
P 7 HOH B 30 430 50 HOH HOH . 
P 7 HOH B 31 431 30 HOH HOH . 
P 7 HOH B 32 432 95 HOH HOH . 
P 7 HOH B 33 433 13 HOH HOH . 
P 7 HOH B 34 434 33 HOH HOH . 
P 7 HOH B 35 435 12 HOH HOH . 
P 7 HOH B 36 436 42 HOH HOH . 
P 7 HOH B 37 437 92 HOH HOH . 
P 7 HOH B 38 438 97 HOH HOH . 
P 7 HOH B 39 439 61 HOH HOH . 
P 7 HOH B 40 440 1 HOH HOH . 
P 7 HOH B 41 441 87 HOH HOH . 
P 7 HOH B 42 442 100 HOH HOH . 
P 7 HOH B 43 443 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -38.834 -41.524 -7.17 1 71.79 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . C 2 -38.884 -42.224 -5.947 1 69.73 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . C 2 -37.386 -41.217 -7.538 1 71.89 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . C 2 -37.189 -41.411 -8.922 1 68.3 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . C 2 -36.435 -42.104 -6.738 1 72.53 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . C 2 -36.369 -41.656 -5.4 1 69.37 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#