data_5W4X
#
_model_server_result.job_id            ny9tZ1_sQJtE_Pn8YI85UA 
_model_server_result.datetime_utc      '2024-11-08 11:57:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w4x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    5W4X 
#
_exptl.entry_id    5W4X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              178.226 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.85 
_cell.angle_gamma         90 
_cell.entry_id            5W4X 
_cell.length_a            178.19 
_cell.length_b            114.066 
_cell.length_c            97.239 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W4X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C8 H18 O4' 
_chem_comp.formula_weight    178.226 
_chem_comp.id                PG5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PG5 sing 237 n n 
C1 H11 PG5 sing 238 n n 
C1 H12 PG5 sing 239 n n 
C1 H13 PG5 sing 240 n n 
O1 C2 PG5 sing 241 n n 
C2 C3 PG5 sing 242 n n 
C2 H21 PG5 sing 243 n n 
C2 H22 PG5 sing 244 n n 
C3 O2 PG5 sing 245 n n 
C3 H31 PG5 sing 246 n n 
C3 H32 PG5 sing 247 n n 
O2 C4 PG5 sing 248 n n 
C4 C5 PG5 sing 249 n n 
C4 H41 PG5 sing 250 n n 
C4 H42 PG5 sing 251 n n 
C5 O3 PG5 sing 252 n n 
C5 H51 PG5 sing 253 n n 
C5 H52 PG5 sing 254 n n 
O3 C6 PG5 sing 255 n n 
C6 C7 PG5 sing 256 n n 
C6 H61 PG5 sing 257 n n 
C6 H62 PG5 sing 258 n n 
C7 O4 PG5 sing 259 n n 
C7 H71 PG5 sing 260 n n 
C7 H72 PG5 sing 261 n n 
O4 C8 PG5 sing 262 n n 
C8 H81 PG5 sing 263 n n 
C8 H82 PG5 sing 264 n n 
C8 H83 PG5 sing 265 n n 
#
_atom_sites.entry_id                     5W4X 
_atom_sites.fract_transf_matrix[1][1]    0.005612 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002841 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011527 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PG5 A 1 501 501 PG5 PE4 . 
E 2 PG5 B 1 501 501 PG5 PE4 . 
F 2 PG5 C 1 501 501 PG5 PE4 . 
G 3 HOH A 1 601 604 HOH HOH . 
G 3 HOH A 2 602 608 HOH HOH . 
G 3 HOH A 3 603 606 HOH HOH . 
G 3 HOH A 4 604 601 HOH HOH . 
G 3 HOH A 5 605 607 HOH HOH . 
G 3 HOH A 6 606 603 HOH HOH . 
G 3 HOH A 7 607 605 HOH HOH . 
G 3 HOH A 8 608 602 HOH HOH . 
H 3 HOH B 1 601 616 HOH HOH . 
H 3 HOH B 2 602 621 HOH HOH . 
H 3 HOH B 3 603 601 HOH HOH . 
H 3 HOH B 4 604 612 HOH HOH . 
H 3 HOH B 5 605 620 HOH HOH . 
H 3 HOH B 6 606 606 HOH HOH . 
H 3 HOH B 7 607 619 HOH HOH . 
H 3 HOH B 8 608 602 HOH HOH . 
H 3 HOH B 9 609 617 HOH HOH . 
H 3 HOH B 10 610 607 HOH HOH . 
H 3 HOH B 11 611 611 HOH HOH . 
H 3 HOH B 12 612 609 HOH HOH . 
H 3 HOH B 13 613 605 HOH HOH . 
H 3 HOH B 14 614 618 HOH HOH . 
H 3 HOH B 15 615 603 HOH HOH . 
H 3 HOH B 16 616 604 HOH HOH . 
H 3 HOH B 17 617 610 HOH HOH . 
H 3 HOH B 18 618 608 HOH HOH . 
H 3 HOH B 19 619 615 HOH HOH . 
H 3 HOH B 20 620 614 HOH HOH . 
H 3 HOH B 21 621 613 HOH HOH . 
I 3 HOH C 1 601 607 HOH HOH . 
I 3 HOH C 2 602 605 HOH HOH . 
I 3 HOH C 3 603 604 HOH HOH . 
I 3 HOH C 4 604 606 HOH HOH . 
I 3 HOH C 5 605 601 HOH HOH . 
I 3 HOH C 6 606 603 HOH HOH . 
I 3 HOH C 7 607 602 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PG5 . . . E 2 -11.165 30.901 12.212 1 80.71 ? C1 PG5 501 B 1 
HETATM 2 O O1 PG5 . . . E 2 -11.259 31.319 10.85 1 84.6 ? O1 PG5 501 B 1 
HETATM 3 C C2 PG5 . . . E 2 -12.168 32.412 10.687 1 87.79 ? C2 PG5 501 B 1 
HETATM 4 C C3 PG5 . . . E 2 -11.669 33.352 9.594 1 86.23 ? C3 PG5 501 B 1 
HETATM 5 O O2 PG5 . . . E 2 -10.751 34.295 10.152 1 85.41 ? O2 PG5 501 B 1 
HETATM 6 C C4 PG5 . . . E 2 -9.4 33.856 9.992 1 84.41 ? C4 PG5 501 B 1 
HETATM 7 C C5 PG5 . . . E 2 -8.495 34.973 9.481 1 84.2 ? C5 PG5 501 B 1 
HETATM 8 O O3 PG5 . . . E 2 -7.882 35.705 10.54 1 84.01 ? O3 PG5 501 B 1 
HETATM 9 C C6 PG5 . . . E 2 -6.463 35.72 10.365 1 84.78 ? C6 PG5 501 B 1 
HETATM 10 C C7 PG5 . . . E 2 -5.866 37.084 10.707 1 83.84 ? C7 PG5 501 B 1 
HETATM 11 O O4 PG5 . . . E 2 -6.13 38.021 9.658 1 77.14 ? O4 PG5 501 B 1 
HETATM 12 C C8 PG5 . . . E 2 -5.112 39.014 9.538 1 68.67 ? C8 PG5 501 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#