data_5W4X # _model_server_result.job_id 1_I87EJuamqxTmU5aKXRmg _model_server_result.datetime_utc '2024-11-08 11:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 5W4X # _exptl.entry_id 5W4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.85 _cell.angle_gamma 90 _cell.entry_id 5W4X _cell.length_a 178.19 _cell.length_b 114.066 _cell.length_c 97.239 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C8 H18 O4' _chem_comp.formula_weight 178.226 _chem_comp.id PG5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PG5 sing 237 n n C1 H11 PG5 sing 238 n n C1 H12 PG5 sing 239 n n C1 H13 PG5 sing 240 n n O1 C2 PG5 sing 241 n n C2 C3 PG5 sing 242 n n C2 H21 PG5 sing 243 n n C2 H22 PG5 sing 244 n n C3 O2 PG5 sing 245 n n C3 H31 PG5 sing 246 n n C3 H32 PG5 sing 247 n n O2 C4 PG5 sing 248 n n C4 C5 PG5 sing 249 n n C4 H41 PG5 sing 250 n n C4 H42 PG5 sing 251 n n C5 O3 PG5 sing 252 n n C5 H51 PG5 sing 253 n n C5 H52 PG5 sing 254 n n O3 C6 PG5 sing 255 n n C6 C7 PG5 sing 256 n n C6 H61 PG5 sing 257 n n C6 H62 PG5 sing 258 n n C7 O4 PG5 sing 259 n n C7 H71 PG5 sing 260 n n C7 H72 PG5 sing 261 n n O4 C8 PG5 sing 262 n n C8 H81 PG5 sing 263 n n C8 H82 PG5 sing 264 n n C8 H83 PG5 sing 265 n n # _atom_sites.entry_id 5W4X _atom_sites.fract_transf_matrix[1][1] 0.005612 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002841 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PG5 A 1 501 501 PG5 PE4 . E 2 PG5 B 1 501 501 PG5 PE4 . F 2 PG5 C 1 501 501 PG5 PE4 . G 3 HOH A 1 601 604 HOH HOH . G 3 HOH A 2 602 608 HOH HOH . G 3 HOH A 3 603 606 HOH HOH . G 3 HOH A 4 604 601 HOH HOH . G 3 HOH A 5 605 607 HOH HOH . G 3 HOH A 6 606 603 HOH HOH . G 3 HOH A 7 607 605 HOH HOH . G 3 HOH A 8 608 602 HOH HOH . H 3 HOH B 1 601 616 HOH HOH . H 3 HOH B 2 602 621 HOH HOH . H 3 HOH B 3 603 601 HOH HOH . H 3 HOH B 4 604 612 HOH HOH . H 3 HOH B 5 605 620 HOH HOH . H 3 HOH B 6 606 606 HOH HOH . H 3 HOH B 7 607 619 HOH HOH . H 3 HOH B 8 608 602 HOH HOH . H 3 HOH B 9 609 617 HOH HOH . H 3 HOH B 10 610 607 HOH HOH . H 3 HOH B 11 611 611 HOH HOH . H 3 HOH B 12 612 609 HOH HOH . H 3 HOH B 13 613 605 HOH HOH . H 3 HOH B 14 614 618 HOH HOH . H 3 HOH B 15 615 603 HOH HOH . H 3 HOH B 16 616 604 HOH HOH . H 3 HOH B 17 617 610 HOH HOH . H 3 HOH B 18 618 608 HOH HOH . H 3 HOH B 19 619 615 HOH HOH . H 3 HOH B 20 620 614 HOH HOH . H 3 HOH B 21 621 613 HOH HOH . I 3 HOH C 1 601 607 HOH HOH . I 3 HOH C 2 602 605 HOH HOH . I 3 HOH C 3 603 604 HOH HOH . I 3 HOH C 4 604 606 HOH HOH . I 3 HOH C 5 605 601 HOH HOH . I 3 HOH C 6 606 603 HOH HOH . I 3 HOH C 7 607 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PG5 . . . F 2 -28.753 -17.685 -16.12 1 118.67 ? C2 PG5 501 C 1 HETATM 2 C C3 PG5 . . . F 2 -29.378 -16.97 -17.312 1 121 ? C3 PG5 501 C 1 HETATM 3 O O2 PG5 . . . F 2 -28.352 -16.355 -18.091 1 122.34 ? O2 PG5 501 C 1 HETATM 4 C C4 PG5 . . . F 2 -28.862 -15.42 -19.041 1 119.92 ? C4 PG5 501 C 1 HETATM 5 C C5 PG5 . . . F 2 -27.87 -15.325 -20.192 1 118 ? C5 PG5 501 C 1 HETATM 6 O O3 PG5 . . . F 2 -27.866 -14.017 -20.758 1 117.4 ? O3 PG5 501 C 1 HETATM 7 C C6 PG5 . . . F 2 -26.991 -13.967 -21.886 1 115.55 ? C6 PG5 501 C 1 HETATM 8 C C7 PG5 . . . F 2 -26.885 -12.547 -22.431 1 111.87 ? C7 PG5 501 C 1 HETATM 9 O O4 PG5 . . . F 2 -26.165 -12.571 -23.663 1 108.4 ? O4 PG5 501 C 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #