data_5W5D # _model_server_result.job_id hV-PHyrXuxO3WZC0U7cwWQ _model_server_result.datetime_utc '2024-10-20 00:47:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 5W5D # _exptl.entry_id 5W5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W5D _cell.length_a 85.202 _cell.length_b 89.199 _cell.length_c 87.202 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 42.601 44.5995 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G MG MG . C MG 101 1_555 J O HOH . C HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc2 G MG MG . C MG 101 1_555 J O HOH . C HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 G MG MG . C MG 101 1_555 J O HOH . C HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc4 G MG MG . C MG 101 1_555 K O HOH . D HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 G MG MG . C MG 101 1_555 K O HOH . D HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 G MG MG . C MG 101 1_555 K O HOH . D HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W5D _atom_sites.fract_transf_matrix[1][1] 0.011737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 MG C 1 101 2 MG MG . H 8 HOH A 1 101 21 HOH HOH . H 8 HOH A 2 102 24 HOH HOH . H 8 HOH A 3 103 11 HOH HOH . H 8 HOH A 4 104 65 HOH HOH . H 8 HOH A 5 105 102 HOH HOH . H 8 HOH A 6 106 101 HOH HOH . I 8 HOH B 1 301 92 HOH HOH . I 8 HOH B 2 302 36 HOH HOH . I 8 HOH B 3 303 93 HOH HOH . I 8 HOH B 4 304 7 HOH HOH . I 8 HOH B 5 305 15 HOH HOH . I 8 HOH B 6 306 86 HOH HOH . J 8 HOH C 1 201 32 HOH HOH . J 8 HOH C 2 202 81 HOH HOH . J 8 HOH C 3 203 46 HOH HOH . J 8 HOH C 4 204 12 HOH HOH . J 8 HOH C 5 205 51 HOH HOH . J 8 HOH C 6 206 34 HOH HOH . J 8 HOH C 7 207 41 HOH HOH . J 8 HOH C 8 208 16 HOH HOH . J 8 HOH C 9 209 90 HOH HOH . J 8 HOH C 10 210 13 HOH HOH . J 8 HOH C 11 211 59 HOH HOH . J 8 HOH C 12 212 45 HOH HOH . J 8 HOH C 13 213 87 HOH HOH . J 8 HOH C 14 214 55 HOH HOH . J 8 HOH C 15 215 18 HOH HOH . K 8 HOH D 1 301 80 HOH HOH . K 8 HOH D 2 302 94 HOH HOH . K 8 HOH D 3 303 75 HOH HOH . K 8 HOH D 4 304 67 HOH HOH . K 8 HOH D 5 305 66 HOH HOH . K 8 HOH D 6 306 61 HOH HOH . K 8 HOH D 7 307 4 HOH HOH . K 8 HOH D 8 308 42 HOH HOH . K 8 HOH D 9 309 72 HOH HOH . K 8 HOH D 10 310 28 HOH HOH . K 8 HOH D 11 311 60 HOH HOH . K 8 HOH D 12 312 62 HOH HOH . L 8 HOH E 1 101 98 HOH HOH . L 8 HOH E 2 102 47 HOH HOH . L 8 HOH E 3 103 103 HOH HOH . M 8 HOH F 1 501 50 HOH HOH . M 8 HOH F 2 502 63 HOH HOH . M 8 HOH F 3 503 95 HOH HOH . M 8 HOH F 4 504 43 HOH HOH . M 8 HOH F 5 505 99 HOH HOH . M 8 HOH F 6 506 58 HOH HOH . M 8 HOH F 7 507 77 HOH HOH . M 8 HOH F 8 508 44 HOH HOH . M 8 HOH F 9 509 17 HOH HOH . M 8 HOH F 10 510 5 HOH HOH . M 8 HOH F 11 511 2 HOH HOH . M 8 HOH F 12 512 96 HOH HOH . M 8 HOH F 13 513 23 HOH HOH . M 8 HOH F 14 514 8 HOH HOH . M 8 HOH F 15 515 79 HOH HOH . M 8 HOH F 16 516 1 HOH HOH . M 8 HOH F 17 517 35 HOH HOH . M 8 HOH F 18 518 48 HOH HOH . M 8 HOH F 19 519 3 HOH HOH . M 8 HOH F 20 520 89 HOH HOH . M 8 HOH F 21 521 6 HOH HOH . M 8 HOH F 22 522 70 HOH HOH . M 8 HOH F 23 523 27 HOH HOH . M 8 HOH F 24 524 22 HOH HOH . M 8 HOH F 25 525 73 HOH HOH . M 8 HOH F 26 526 83 HOH HOH . M 8 HOH F 27 527 14 HOH HOH . M 8 HOH F 28 528 64 HOH HOH . M 8 HOH F 29 529 78 HOH HOH . M 8 HOH F 30 530 53 HOH HOH . M 8 HOH F 31 531 19 HOH HOH . M 8 HOH F 32 532 69 HOH HOH . M 8 HOH F 33 533 84 HOH HOH . M 8 HOH F 34 534 10 HOH HOH . M 8 HOH F 35 535 91 HOH HOH . M 8 HOH F 36 536 71 HOH HOH . M 8 HOH F 37 537 68 HOH HOH . M 8 HOH F 38 538 88 HOH HOH . M 8 HOH F 39 539 54 HOH HOH . M 8 HOH F 40 540 20 HOH HOH . M 8 HOH F 41 541 40 HOH HOH . M 8 HOH F 42 542 105 HOH HOH . M 8 HOH F 43 543 52 HOH HOH . M 8 HOH F 44 544 49 HOH HOH . M 8 HOH F 45 545 9 HOH HOH . M 8 HOH F 46 546 82 HOH HOH . M 8 HOH F 47 547 33 HOH HOH . M 8 HOH F 48 548 25 HOH HOH . M 8 HOH F 49 549 31 HOH HOH . M 8 HOH F 50 550 74 HOH HOH . M 8 HOH F 51 551 37 HOH HOH . M 8 HOH F 52 552 104 HOH HOH . M 8 HOH F 53 553 56 HOH HOH . M 8 HOH F 54 554 26 HOH HOH . M 8 HOH F 55 555 100 HOH HOH . M 8 HOH F 56 556 76 HOH HOH . M 8 HOH F 57 557 30 HOH HOH . M 8 HOH F 58 558 97 HOH HOH . M 8 HOH F 59 559 39 HOH HOH . M 8 HOH F 60 560 85 HOH HOH . M 8 HOH F 61 561 29 HOH HOH . M 8 HOH F 62 562 38 HOH HOH . M 8 HOH F 63 563 57 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 7 _atom_site.Cartn_x -5.583 _atom_site.Cartn_y -1.734 _atom_site.Cartn_z -16.882 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 544 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #