data_5W5S # _model_server_result.job_id KmA6VKoconHg7XoZt1IqPg _model_server_result.datetime_utc '2024-11-23 23:18:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":408}' # _entry.id 5W5S # _exptl.entry_id 5W5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W5S _cell.length_a 162.897 _cell.length_b 162.897 _cell.length_c 162.897 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG P 2 NAG 4 n D NAG 2 C 2 NAG P 3 NAG 4 n E NAG 1 E 1 NAG P 4 NAG 4 n E NAG 2 E 2 NAG P 5 NAG 4 n F NAG 1 F 1 NAG P 7 NAG 4 n F NAG 2 F 2 NAG P 8 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 42 A CYS 52 1_555 A SG CYS 274 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 55 A CYS 64 1_555 A SG CYS 67 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 90 A CYS 97 1_555 A SG CYS 135 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 278 A CYS 281 1_555 A SG CYS 302 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 11 A ASN 21 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 A ND2 ASN 23 A ASN 33 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale3 A ND2 ASN 268 A ASN 271 1_555 H C1 NAG . A NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 A ND2 ASN 286 A ASN 289 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B ND2 ASN 154 B ASN 154 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 C C ACE 1 D ACE 1 1_555 C N PH8 2 D PH8 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 ? covale ? covale7 C C PH8 2 D PH8 2 1_555 C N ORN 3 D ORN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 C C ORN 3 D ORN 3 1_555 C N LEU 4 D LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale9 C NE ORN 3 D ORN 3 1_555 C C BAL 12 D BAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale10 C C TYR 6 D TYR 6 1_555 C N ZCL 7 D ZCL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale11 C C ZCL 7 D ZCL 7 1_555 C N GLU 8 D GLU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale12 C C SER 11 D SER 11 1_555 C N BAL 12 D BAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale13 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale14 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W5S _atom_sites.fract_transf_matrix[1][1] 0.006139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 401 1 NAG NAG . H 5 NAG A 1 406 6 NAG NAG . I 6 CL A 1 407 2 CL CL . J 6 CL A 1 408 3 CL CL . K 6 CL B 1 203 1 CL CL . L 7 HOH A 1 501 83 HOH HOH . L 7 HOH A 2 502 46 HOH HOH . L 7 HOH A 3 503 15 HOH HOH . L 7 HOH A 4 504 202 HOH HOH . L 7 HOH A 5 505 89 HOH HOH . L 7 HOH A 6 506 179 HOH HOH . L 7 HOH A 7 507 135 HOH HOH . L 7 HOH A 8 508 76 HOH HOH . L 7 HOH A 9 509 60 HOH HOH . L 7 HOH A 10 510 102 HOH HOH . L 7 HOH A 11 511 85 HOH HOH . L 7 HOH A 12 512 4 HOH HOH . L 7 HOH A 13 513 123 HOH HOH . L 7 HOH A 14 514 84 HOH HOH . L 7 HOH A 15 515 41 HOH HOH . L 7 HOH A 16 516 12 HOH HOH . L 7 HOH A 17 517 133 HOH HOH . L 7 HOH A 18 518 74 HOH HOH . L 7 HOH A 19 519 33 HOH HOH . L 7 HOH A 20 520 99 HOH HOH . L 7 HOH A 21 521 75 HOH HOH . L 7 HOH A 22 522 11 HOH HOH . L 7 HOH A 23 523 87 HOH HOH . L 7 HOH A 24 524 6 HOH HOH . L 7 HOH A 25 525 136 HOH HOH . L 7 HOH A 26 526 134 HOH HOH . L 7 HOH A 27 527 54 HOH HOH . L 7 HOH A 28 528 34 HOH HOH . L 7 HOH A 29 529 82 HOH HOH . L 7 HOH A 30 530 109 HOH HOH . L 7 HOH A 31 531 45 HOH HOH . L 7 HOH A 32 532 121 HOH HOH . L 7 HOH A 33 533 68 HOH HOH . L 7 HOH A 34 534 13 HOH HOH . L 7 HOH A 35 535 180 HOH HOH . L 7 HOH A 36 536 137 HOH HOH . L 7 HOH A 37 537 110 HOH HOH . L 7 HOH A 38 538 181 HOH HOH . L 7 HOH A 39 539 25 HOH HOH . L 7 HOH A 40 540 47 HOH HOH . L 7 HOH A 41 541 70 HOH HOH . L 7 HOH A 42 542 10 HOH HOH . L 7 HOH A 43 543 196 HOH HOH . L 7 HOH A 44 544 96 HOH HOH . L 7 HOH A 45 545 58 HOH HOH . L 7 HOH A 46 546 17 HOH HOH . L 7 HOH A 47 547 164 HOH HOH . L 7 HOH A 48 548 20 HOH HOH . L 7 HOH A 49 549 30 HOH HOH . L 7 HOH A 50 550 69 HOH HOH . L 7 HOH A 51 551 92 HOH HOH . L 7 HOH A 52 552 50 HOH HOH . L 7 HOH A 53 553 132 HOH HOH . L 7 HOH A 54 554 151 HOH HOH . L 7 HOH A 55 555 166 HOH HOH . L 7 HOH A 56 556 73 HOH HOH . L 7 HOH A 57 557 112 HOH HOH . L 7 HOH A 58 558 150 HOH HOH . L 7 HOH A 59 559 108 HOH HOH . L 7 HOH A 60 560 59 HOH HOH . L 7 HOH A 61 561 94 HOH HOH . L 7 HOH A 62 562 158 HOH HOH . L 7 HOH A 63 563 86 HOH HOH . L 7 HOH A 64 564 31 HOH HOH . L 7 HOH A 65 565 148 HOH HOH . L 7 HOH A 66 566 106 HOH HOH . L 7 HOH A 67 567 27 HOH HOH . L 7 HOH A 68 568 143 HOH HOH . L 7 HOH A 69 569 32 HOH HOH . L 7 HOH A 70 570 122 HOH HOH . L 7 HOH A 71 571 98 HOH HOH . L 7 HOH A 72 572 163 HOH HOH . L 7 HOH A 73 573 116 HOH HOH . L 7 HOH A 74 574 77 HOH HOH . L 7 HOH A 75 575 65 HOH HOH . L 7 HOH A 76 576 43 HOH HOH . L 7 HOH A 77 577 81 HOH HOH . L 7 HOH A 78 578 71 HOH HOH . L 7 HOH A 79 579 186 HOH HOH . L 7 HOH A 80 580 23 HOH HOH . L 7 HOH A 81 581 125 HOH HOH . L 7 HOH A 82 582 145 HOH HOH . L 7 HOH A 83 583 28 HOH HOH . L 7 HOH A 84 584 95 HOH HOH . L 7 HOH A 85 585 62 HOH HOH . L 7 HOH A 86 586 197 HOH HOH . L 7 HOH A 87 587 188 HOH HOH . L 7 HOH A 88 588 155 HOH HOH . L 7 HOH A 89 589 162 HOH HOH . L 7 HOH A 90 590 66 HOH HOH . L 7 HOH A 91 591 72 HOH HOH . L 7 HOH A 92 592 157 HOH HOH . L 7 HOH A 93 593 79 HOH HOH . L 7 HOH A 94 594 103 HOH HOH . L 7 HOH A 95 595 161 HOH HOH . L 7 HOH A 96 596 124 HOH HOH . L 7 HOH A 97 597 140 HOH HOH . L 7 HOH A 98 598 198 HOH HOH . L 7 HOH A 99 599 117 HOH HOH . L 7 HOH A 100 600 119 HOH HOH . L 7 HOH A 101 601 200 HOH HOH . L 7 HOH A 102 602 184 HOH HOH . L 7 HOH A 103 603 194 HOH HOH . L 7 HOH A 104 604 199 HOH HOH . L 7 HOH A 105 605 129 HOH HOH . L 7 HOH A 106 606 178 HOH HOH . L 7 HOH A 107 607 203 HOH HOH . L 7 HOH A 108 608 141 HOH HOH . L 7 HOH A 109 609 138 HOH HOH . L 7 HOH A 110 610 111 HOH HOH . L 7 HOH A 111 611 185 HOH HOH . L 7 HOH A 112 612 195 HOH HOH . L 7 HOH A 113 613 201 HOH HOH . L 7 HOH A 114 614 187 HOH HOH . L 7 HOH A 115 615 182 HOH HOH . L 7 HOH A 116 616 169 HOH HOH . L 7 HOH A 117 617 104 HOH HOH . L 7 HOH A 118 618 97 HOH HOH . L 7 HOH A 119 619 160 HOH HOH . M 7 HOH B 1 301 49 HOH HOH . M 7 HOH B 2 302 114 HOH HOH . M 7 HOH B 3 303 190 HOH HOH . M 7 HOH B 4 304 7 HOH HOH . M 7 HOH B 5 305 53 HOH HOH . M 7 HOH B 6 306 120 HOH HOH . M 7 HOH B 7 307 118 HOH HOH . M 7 HOH B 8 308 144 HOH HOH . M 7 HOH B 9 309 153 HOH HOH . M 7 HOH B 10 310 44 HOH HOH . M 7 HOH B 11 311 105 HOH HOH . M 7 HOH B 12 312 8 HOH HOH . M 7 HOH B 13 313 26 HOH HOH . M 7 HOH B 14 314 24 HOH HOH . M 7 HOH B 15 315 113 HOH HOH . M 7 HOH B 16 316 156 HOH HOH . M 7 HOH B 17 317 35 HOH HOH . M 7 HOH B 18 318 57 HOH HOH . M 7 HOH B 19 319 18 HOH HOH . M 7 HOH B 20 320 131 HOH HOH . M 7 HOH B 21 321 14 HOH HOH . M 7 HOH B 22 322 154 HOH HOH . M 7 HOH B 23 323 40 HOH HOH . M 7 HOH B 24 324 16 HOH HOH . M 7 HOH B 25 325 22 HOH HOH . M 7 HOH B 26 326 177 HOH HOH . M 7 HOH B 27 327 93 HOH HOH . M 7 HOH B 28 328 5 HOH HOH . M 7 HOH B 29 329 19 HOH HOH . M 7 HOH B 30 330 78 HOH HOH . M 7 HOH B 31 331 168 HOH HOH . M 7 HOH B 32 332 183 HOH HOH . M 7 HOH B 33 333 51 HOH HOH . M 7 HOH B 34 334 165 HOH HOH . M 7 HOH B 35 335 80 HOH HOH . M 7 HOH B 36 336 38 HOH HOH . M 7 HOH B 37 337 21 HOH HOH . M 7 HOH B 38 338 48 HOH HOH . M 7 HOH B 39 339 167 HOH HOH . M 7 HOH B 40 340 91 HOH HOH . M 7 HOH B 41 341 149 HOH HOH . M 7 HOH B 42 342 115 HOH HOH . M 7 HOH B 43 343 139 HOH HOH . M 7 HOH B 44 344 9 HOH HOH . M 7 HOH B 45 345 189 HOH HOH . M 7 HOH B 46 346 146 HOH HOH . M 7 HOH B 47 347 61 HOH HOH . M 7 HOH B 48 348 101 HOH HOH . M 7 HOH B 49 349 29 HOH HOH . M 7 HOH B 50 350 90 HOH HOH . M 7 HOH B 51 351 130 HOH HOH . M 7 HOH B 52 352 64 HOH HOH . M 7 HOH B 53 353 159 HOH HOH . M 7 HOH B 54 354 107 HOH HOH . M 7 HOH B 55 355 191 HOH HOH . M 7 HOH B 56 356 192 HOH HOH . M 7 HOH B 57 357 193 HOH HOH . M 7 HOH B 58 358 142 HOH HOH . M 7 HOH B 59 359 63 HOH HOH . N 7 HOH D 1 101 67 HOH HOH . N 7 HOH D 2 102 152 HOH HOH . N 7 HOH D 3 103 52 HOH HOH . N 7 HOH D 4 104 127 HOH HOH . N 7 HOH D 5 105 55 HOH HOH . N 7 HOH D 6 106 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 6 _atom_site.Cartn_x -0.794 _atom_site.Cartn_y -6.134 _atom_site.Cartn_z 7.654 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 408 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #