data_5W5U # _model_server_result.job_id 0naX3YbQghixsCq8tlZRKQ _model_server_result.datetime_utc '2024-10-17 13:29:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":203}' # _entry.id 5W5U # _exptl.entry_id 5W5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W5U _cell.length_a 161.362 _cell.length_b 161.362 _cell.length_c 161.362 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG P 7 NAG 4 n D NAG 2 C 2 NAG P 8 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 42 A CYS 52 1_555 A SG CYS 274 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 55 A CYS 64 1_555 A SG CYS 67 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 90 A CYS 97 1_555 A SG CYS 135 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 278 A CYS 281 1_555 A SG CYS 302 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 11 A ASN 21 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 23 A ASN 33 1_555 F C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale3 A ND2 ASN 268 A ASN 271 1_555 H C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 286 A ASN 289 1_555 E C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 B ND2 ASN 154 B ASN 154 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale6 C C ACE 1 D ACE 1 1_555 C N PH8 2 D PH8 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale7 C C PH8 2 D PH8 2 1_555 C N ORN 3 D ORN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale8 C C ORN 3 D ORN 3 1_555 C N MLE 4 D MLE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 C NE ORN 3 D ORN 3 1_555 C C BAL 12 D BAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale10 C C MLE 4 D MLE 4 1_555 C N GLU 5 D GLU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale11 C C SER 11 D SER 11 1_555 C N BAL 12 D BAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale12 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.121 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5W5U _atom_sites.fract_transf_matrix[1][1] 0.006197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 401 1 NAG NAG . F 5 NAG A 1 402 2 NAG NAG . G 5 NAG A 1 403 4 NAG NAG . H 5 NAG A 1 404 6 NAG NAG . I 6 CL A 1 405 2 CL CL . J 6 CL B 1 203 1 CL CL . K 7 HOH A 1 501 38 HOH HOH . K 7 HOH A 2 502 13 HOH HOH . K 7 HOH A 3 503 7 HOH HOH . K 7 HOH A 4 504 12 HOH HOH . K 7 HOH A 5 505 4 HOH HOH . K 7 HOH A 6 506 3 HOH HOH . K 7 HOH A 7 507 17 HOH HOH . K 7 HOH A 8 508 19 HOH HOH . K 7 HOH A 9 509 8 HOH HOH . K 7 HOH A 10 510 22 HOH HOH . K 7 HOH A 11 511 42 HOH HOH . K 7 HOH A 12 512 58 HOH HOH . K 7 HOH A 13 513 25 HOH HOH . K 7 HOH A 14 514 40 HOH HOH . K 7 HOH A 15 515 5 HOH HOH . K 7 HOH A 16 516 50 HOH HOH . K 7 HOH A 17 517 43 HOH HOH . K 7 HOH A 18 518 36 HOH HOH . K 7 HOH A 19 519 46 HOH HOH . K 7 HOH A 20 520 61 HOH HOH . K 7 HOH A 21 521 21 HOH HOH . K 7 HOH A 22 522 26 HOH HOH . K 7 HOH A 23 523 52 HOH HOH . K 7 HOH A 24 524 64 HOH HOH . K 7 HOH A 25 525 55 HOH HOH . K 7 HOH A 26 526 49 HOH HOH . K 7 HOH A 27 527 45 HOH HOH . K 7 HOH A 28 528 16 HOH HOH . K 7 HOH A 29 529 65 HOH HOH . K 7 HOH A 30 530 33 HOH HOH . L 7 HOH B 1 301 15 HOH HOH . L 7 HOH B 2 302 10 HOH HOH . L 7 HOH B 3 303 34 HOH HOH . L 7 HOH B 4 304 60 HOH HOH . L 7 HOH B 5 305 20 HOH HOH . L 7 HOH B 6 306 41 HOH HOH . L 7 HOH B 7 307 57 HOH HOH . L 7 HOH B 8 308 39 HOH HOH . L 7 HOH B 9 309 6 HOH HOH . L 7 HOH B 10 310 14 HOH HOH . L 7 HOH B 11 311 48 HOH HOH . L 7 HOH B 12 312 54 HOH HOH . L 7 HOH B 13 313 35 HOH HOH . L 7 HOH B 14 314 1 HOH HOH . L 7 HOH B 15 315 51 HOH HOH . L 7 HOH B 16 316 63 HOH HOH . L 7 HOH B 17 317 59 HOH HOH . L 7 HOH B 18 318 23 HOH HOH . L 7 HOH B 19 319 32 HOH HOH . L 7 HOH B 20 320 29 HOH HOH . L 7 HOH B 21 321 62 HOH HOH . L 7 HOH B 22 322 37 HOH HOH . L 7 HOH B 23 323 9 HOH HOH . L 7 HOH B 24 324 47 HOH HOH . L 7 HOH B 25 325 44 HOH HOH . L 7 HOH B 26 326 28 HOH HOH . M 7 HOH D 1 101 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 6 _atom_site.Cartn_x -47.639 _atom_site.Cartn_y -68.008 _atom_site.Cartn_z -35.602 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 203 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #