data_5W5U
#
_model_server_result.job_id            0LEEgU3TMx2j_jSgjl9w7g 
_model_server_result.datetime_utc      '2024-11-24 02:48:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w5u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    5W5U 
#
_exptl.entry_id    5W5U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5W5U 
_cell.length_a            161.362 
_cell.length_b            161.362 
_cell.length_c            161.362 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W5U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
#
_pdbx_entity_branch.entity_id    4 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   4 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
4 n D NAG 1 C 1 NAG P 7 NAG 
4 n D NAG 2 C 2 NAG P 8 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 42 A CYS 52 1_555 A SG CYS 274 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 55 A CYS 64 1_555 A SG CYS 67 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 90 A CYS 97 1_555 A SG CYS 135 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 278 A CYS 281 1_555 A SG CYS 302 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 11 A ASN 21 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 A ND2 ASN 23 A ASN 33 1_555 F C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale3 A ND2 ASN 268 A ASN 271 1_555 H C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale4 A ND2 ASN 286 A ASN 289 1_555 E C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale5 B ND2 ASN 154 B ASN 154 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale6 C C ACE 1 D ACE 1 1_555 C N PH8 2 D PH8 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale7 C C PH8 2 D PH8 2 1_555 C N ORN 3 D ORN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
covale ? covale8 C C ORN 3 D ORN 3 1_555 C N MLE 4 D MLE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale9 C NE ORN 3 D ORN 3 1_555 C C BAL 12 D BAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale10 C C MLE 4 D MLE 4 1_555 C N GLU 5 D GLU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale11 C C SER 11 D SER 11 1_555 C N BAL 12 D BAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? 
covale ? covale12 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.121 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 279 n n 
C1 O1 NAG sing 280 n n 
C1 O5 NAG sing 281 n n 
C1 H1 NAG sing 282 n n 
C2 C3 NAG sing 283 n n 
C2 N2 NAG sing 284 n n 
C2 H2 NAG sing 285 n n 
C3 C4 NAG sing 286 n n 
C3 O3 NAG sing 287 n n 
C3 H3 NAG sing 288 n n 
C4 C5 NAG sing 289 n n 
C4 O4 NAG sing 290 n n 
C4 H4 NAG sing 291 n n 
C5 C6 NAG sing 292 n n 
C5 O5 NAG sing 293 n n 
C5 H5 NAG sing 294 n n 
C6 O6 NAG sing 295 n n 
C6 H61 NAG sing 296 n n 
C6 H62 NAG sing 297 n n 
C7 C8 NAG sing 298 n n 
C7 N2 NAG sing 299 n n 
C7 O7 NAG doub 300 n n 
C8 H81 NAG sing 301 n n 
C8 H82 NAG sing 302 n n 
C8 H83 NAG sing 303 n n 
N2 HN2 NAG sing 304 n n 
O1 HO1 NAG sing 305 n n 
O3 HO3 NAG sing 306 n n 
O4 HO4 NAG sing 307 n n 
O6 HO6 NAG sing 308 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5W5U 
_atom_sites.fract_transf_matrix[1][1]    0.006197 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006197 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG A 1 401 1 NAG NAG . 
F 5 NAG A 1 402 2 NAG NAG . 
G 5 NAG A 1 403 4 NAG NAG . 
H 5 NAG A 1 404 6 NAG NAG . 
I 6 CL A 1 405 2 CL CL . 
J 6 CL B 1 203 1 CL CL . 
K 7 HOH A 1 501 38 HOH HOH . 
K 7 HOH A 2 502 13 HOH HOH . 
K 7 HOH A 3 503 7 HOH HOH . 
K 7 HOH A 4 504 12 HOH HOH . 
K 7 HOH A 5 505 4 HOH HOH . 
K 7 HOH A 6 506 3 HOH HOH . 
K 7 HOH A 7 507 17 HOH HOH . 
K 7 HOH A 8 508 19 HOH HOH . 
K 7 HOH A 9 509 8 HOH HOH . 
K 7 HOH A 10 510 22 HOH HOH . 
K 7 HOH A 11 511 42 HOH HOH . 
K 7 HOH A 12 512 58 HOH HOH . 
K 7 HOH A 13 513 25 HOH HOH . 
K 7 HOH A 14 514 40 HOH HOH . 
K 7 HOH A 15 515 5 HOH HOH . 
K 7 HOH A 16 516 50 HOH HOH . 
K 7 HOH A 17 517 43 HOH HOH . 
K 7 HOH A 18 518 36 HOH HOH . 
K 7 HOH A 19 519 46 HOH HOH . 
K 7 HOH A 20 520 61 HOH HOH . 
K 7 HOH A 21 521 21 HOH HOH . 
K 7 HOH A 22 522 26 HOH HOH . 
K 7 HOH A 23 523 52 HOH HOH . 
K 7 HOH A 24 524 64 HOH HOH . 
K 7 HOH A 25 525 55 HOH HOH . 
K 7 HOH A 26 526 49 HOH HOH . 
K 7 HOH A 27 527 45 HOH HOH . 
K 7 HOH A 28 528 16 HOH HOH . 
K 7 HOH A 29 529 65 HOH HOH . 
K 7 HOH A 30 530 33 HOH HOH . 
L 7 HOH B 1 301 15 HOH HOH . 
L 7 HOH B 2 302 10 HOH HOH . 
L 7 HOH B 3 303 34 HOH HOH . 
L 7 HOH B 4 304 60 HOH HOH . 
L 7 HOH B 5 305 20 HOH HOH . 
L 7 HOH B 6 306 41 HOH HOH . 
L 7 HOH B 7 307 57 HOH HOH . 
L 7 HOH B 8 308 39 HOH HOH . 
L 7 HOH B 9 309 6 HOH HOH . 
L 7 HOH B 10 310 14 HOH HOH . 
L 7 HOH B 11 311 48 HOH HOH . 
L 7 HOH B 12 312 54 HOH HOH . 
L 7 HOH B 13 313 35 HOH HOH . 
L 7 HOH B 14 314 1 HOH HOH . 
L 7 HOH B 15 315 51 HOH HOH . 
L 7 HOH B 16 316 63 HOH HOH . 
L 7 HOH B 17 317 59 HOH HOH . 
L 7 HOH B 18 318 23 HOH HOH . 
L 7 HOH B 19 319 32 HOH HOH . 
L 7 HOH B 20 320 29 HOH HOH . 
L 7 HOH B 21 321 62 HOH HOH . 
L 7 HOH B 22 322 37 HOH HOH . 
L 7 HOH B 23 323 9 HOH HOH . 
L 7 HOH B 24 324 47 HOH HOH . 
L 7 HOH B 25 325 44 HOH HOH . 
L 7 HOH B 26 326 28 HOH HOH . 
M 7 HOH D 1 101 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 5 -51.041 -40.443 -17.558 1 106.9 ? C1 NAG 402 A 1 
HETATM 2 C C2 NAG . . . F 5 -52.224 -39.759 -16.892 1 114.55 ? C2 NAG 402 A 1 
HETATM 3 C C3 NAG . . . F 5 -52.841 -40.641 -15.807 1 118.99 ? C3 NAG 402 A 1 
HETATM 4 C C4 NAG . . . F 5 -53.053 -42.067 -16.28 1 118.63 ? C4 NAG 402 A 1 
HETATM 5 C C5 NAG . . . F 5 -51.795 -42.576 -16.952 1 112.23 ? C5 NAG 402 A 1 
HETATM 6 C C6 NAG . . . F 5 -51.986 -43.969 -17.505 1 105.8 ? C6 NAG 402 A 1 
HETATM 7 C C7 NAG . . . F 5 -51.948 -37.391 -17.037 1 115.18 ? C7 NAG 402 A 1 
HETATM 8 C C8 NAG . . . F 5 -51.839 -36.134 -16.247 1 116.77 ? C8 NAG 402 A 1 
HETATM 9 N N2 NAG . . . F 5 -51.782 -38.505 -16.349 1 115.02 ? N2 NAG 402 A 1 
HETATM 10 O O3 NAG . . . F 5 -54.117 -40.154 -15.39 1 120.67 ? O3 NAG 402 A 1 
HETATM 11 O O4 NAG . . . F 5 -53.294 -42.834 -15.11 1 121.13 ? O4 NAG 402 A 1 
HETATM 12 O O5 NAG . . . F 5 -51.463 -41.717 -18.02 1 109.9 ? O5 NAG 402 A 1 
HETATM 13 O O6 NAG . . . F 5 -53.348 -44.082 -17.927 1 101.96 ? O6 NAG 402 A 1 
HETATM 14 O O7 NAG . . . F 5 -52.175 -37.385 -18.227 1 113.36 ? O7 NAG 402 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           14 
#