data_5W5W # _model_server_result.job_id 83o_Zc7k-ZpSFYD6kDBsqg _model_server_result.datetime_utc '2025-01-25 07:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5W5W # _exptl.entry_id 5W5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 909.077 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W5W _cell.length_a 28.846 _cell.length_b 65.542 _cell.length_c 92.876 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C50 H64 N6 O10' _chem_comp.formula_weight 909.077 _chem_comp.id 3TL _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'TL-3, C2 symmetric inhibitor' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 O8 3TL doub 1 n n C31 O9 3TL sing 2 n n C31 N4 3TL sing 3 n n O9 CA 3TL sing 4 n n CA C 3TL sing 5 n n CA HA1 3TL sing 6 n n CA HA2 3TL sing 7 n n C C13 3TL doub 8 n y C C17 3TL sing 9 n y C13 C14 3TL sing 10 n y C13 H13 3TL sing 11 n n C14 C15 3TL doub 12 n y C14 H14 3TL sing 13 n n C15 C16 3TL sing 14 n y C15 H15 3TL sing 15 n n C16 C17 3TL doub 16 n y C16 H16 3TL sing 17 n n C17 H17 3TL sing 18 n n N4 C18 3TL sing 19 n n N4 HN4 3TL sing 20 n n C18 C19 3TL sing 21 n n C18 C20 3TL sing 22 n n C18 H18 3TL sing 23 n n C19 O4 3TL doub 24 n n C19 N2 3TL sing 25 n n C20 H201 3TL sing 26 n n C20 H202 3TL sing 27 n n C20 H203 3TL sing 28 n n N2 C10 3TL sing 29 n n N2 HN2 3TL sing 30 n n C10 C11 3TL sing 31 n n C10 C12 3TL sing 32 n n C10 H10 3TL sing 33 n n C11 O2 3TL doub 34 n n C11 N1 3TL sing 35 n n C12 CG2 3TL sing 36 n n C12 CG1 3TL sing 37 n n C12 H12 3TL sing 38 n n CG2 HG21 3TL sing 39 n n CG2 HG22 3TL sing 40 n n CG2 HG23 3TL sing 41 n n CG1 HG11 3TL sing 42 n n CG1 HG12 3TL sing 43 n n CG1 HG13 3TL sing 44 n n C2 O1 3TL sing 45 n n C2 C1 3TL sing 46 n n C2 H2 3TL sing 47 n n C2 C52 3TL sing 48 n n O1 HO1 3TL sing 49 n n C1 N1 3TL sing 50 n n C1 C3 3TL sing 51 n n C1 H1 3TL sing 52 n n N1 HN1 3TL sing 53 n n C3 C4 3TL sing 54 n n C3 H31 3TL sing 55 n n C3 H32 3TL sing 56 n n C4 C5 3TL doub 57 n y C4 C9 3TL sing 58 n y C5 C6 3TL sing 59 n y C5 H5 3TL sing 60 n n C9 C8 3TL doub 61 n y C9 H9 3TL sing 62 n n C6 C7 3TL doub 63 n y C6 H6 3TL sing 64 n n C8 C7 3TL sing 65 n y C8 H8 3TL sing 66 n n C7 H7 3TL sing 67 n n N51 C51 3TL sing 68 n n N51 HN51 3TL sing 69 n n N51 C61 3TL sing 70 n n C51 C52 3TL sing 71 n n C51 C53 3TL sing 72 n n C51 H51 3TL sing 73 n n C52 O51 3TL sing 74 n n C52 H52 3TL sing 75 n n O51 HO51 3TL sing 76 n n C53 C54 3TL sing 77 n n C53 H531 3TL sing 78 n n C53 H532 3TL sing 79 n n C54 C55 3TL doub 80 n y C54 C59 3TL sing 81 n y C55 C56 3TL sing 82 n y C55 H55 3TL sing 83 n n C59 C58 3TL doub 84 n y C59 H59 3TL sing 85 n n C56 C57 3TL doub 86 n y C56 H56 3TL sing 87 n n C58 C57 3TL sing 88 n y C58 H58 3TL sing 89 n n C57 H57 3TL sing 90 n n N52 C60 3TL sing 91 n n N52 HN52 3TL sing 92 n n N52 C69 3TL sing 93 n n C60 C61 3TL sing 94 n n C60 C62 3TL sing 95 n n C60 H60 3TL sing 96 n n C61 O52 3TL doub 97 n n C62 CG6 3TL sing 98 n n C62 CG5 3TL sing 99 n n C62 H62 3TL sing 100 n n CG6 HG61 3TL sing 101 n n CG6 HG62 3TL sing 102 n n CG6 HG63 3TL sing 103 n n CG5 HG51 3TL sing 104 n n CG5 HG52 3TL sing 105 n n CG5 HG53 3TL sing 106 n n N54 C68 3TL sing 107 n n N54 HN54 3TL sing 108 n n N54 C81 3TL sing 109 n n C68 C69 3TL sing 110 n n C68 C70 3TL sing 111 n n C68 H68 3TL sing 112 n n C69 O54 3TL doub 113 n n C70 H701 3TL sing 114 n n C70 H702 3TL sing 115 n n C70 H703 3TL sing 116 n n C81 O58 3TL doub 117 n n C81 O59 3TL sing 118 n n O59 CA5 3TL sing 119 n n CA5 C50 3TL sing 120 n n CA5 HA51 3TL sing 121 n n CA5 HA52 3TL sing 122 n n C50 C63 3TL doub 123 n y C50 C67 3TL sing 124 n y C63 C64 3TL sing 125 n y C63 H63 3TL sing 126 n n C64 C65 3TL doub 127 n y C64 H64 3TL sing 128 n n C65 C66 3TL sing 129 n y C65 H65 3TL sing 130 n n C66 C67 3TL doub 131 n y C66 H66 3TL sing 132 n n C67 H67 3TL sing 133 n n # _atom_sites.entry_id 5W5W _atom_sites.fract_transf_matrix[1][1] 0.034667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3TL A 1 101 200 3TL 3TL . D 3 HV9 A 1 102 3 HV9 HV9 . E 4 DMS B 1 101 2 DMS DMS . F 5 HOH A 1 201 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 3TL . . . C 2 20.296 -11.07 -12.3 1 22.8 ? C31 3TL 101 A 1 HETATM 2 O O8 3TL . . . C 2 21.371 -10.145 -12.062 1 22.53 ? O8 3TL 101 A 1 HETATM 3 O O9 3TL . . . C 2 20.187 -12.289 -11.512 1 22.26 ? O9 3TL 101 A 1 HETATM 4 C CA 3TL . . . C 2 21.367 -13.055 -11.223 1 21.07 ? CA 3TL 101 A 1 HETATM 5 C C 3TL . . . C 2 21.13 -13.836 -9.943 1 20.49 ? C 3TL 101 A 1 HETATM 6 C C13 3TL . . . C 2 22.359 -14.103 -9.056 1 20.29 ? C13 3TL 101 A 1 HETATM 7 C C14 3TL . . . C 2 22.29 -15.173 -7.949 1 19.53 ? C14 3TL 101 A 1 HETATM 8 C C15 3TL . . . C 2 21.031 -16.028 -7.8 1 19.05 ? C15 3TL 101 A 1 HETATM 9 C C16 3TL . . . C 2 20.05 -16.048 -8.972 1 19.4 ? C16 3TL 101 A 1 HETATM 10 C C17 3TL . . . C 2 19.978 -14.845 -9.924 1 20.03 ? C17 3TL 101 A 1 HETATM 11 N N4 3TL . . . C 2 19.225 -10.813 -13.305 1 22.5 ? N4 3TL 101 A 1 HETATM 12 C C18 3TL . . . C 2 18.932 -9.455 -13.84 1 22.54 ? C18 3TL 101 A 1 HETATM 13 C C19 3TL . . . C 2 17.892 -8.672 -13.047 1 22.58 ? C19 3TL 101 A 1 HETATM 14 O O4 3TL . . . C 2 18.044 -7.259 -12.964 1 22.53 ? O4 3TL 101 A 1 HETATM 15 C C20 3TL . . . C 2 18.49 -9.573 -15.301 1 22.73 ? C20 3TL 101 A 1 HETATM 16 N N2 3TL . . . C 2 16.721 -9.4 -12.465 1 23.17 ? N2 3TL 101 A 1 HETATM 17 C C10 3TL . . . C 2 15.477 -8.618 -12.151 1 24.19 ? C10 3TL 101 A 1 HETATM 18 C C11 3TL . . . C 2 14.995 -8.925 -10.723 1 24.63 ? C11 3TL 101 A 1 HETATM 19 O O2 3TL . . . C 2 14.17 -10.036 -10.37 1 25.23 ? O2 3TL 101 A 1 HETATM 20 C C12 3TL . . . C 2 14.428 -8.514 -13.289 1 24.62 ? C12 3TL 101 A 1 HETATM 21 C CG2 3TL . . . C 2 14.925 -8.973 -14.678 1 24.24 ? CG2 3TL 101 A 1 HETATM 22 C CG1 3TL . . . C 2 12.986 -8.956 -12.928 1 24.17 ? CG1 3TL 101 A 1 HETATM 23 C C2 3TL . . . C 2 14.27 -6.478 -8.12 1 25.61 ? C2 3TL 101 A 1 HETATM 24 O O1 3TL . . . C 2 15.093 -5.494 -8.783 1 25.43 ? O1 3TL 101 A 1 HETATM 25 C C1 3TL . . . C 2 14.973 -7.839 -8.322 1 25.15 ? C1 3TL 101 A 1 HETATM 26 N N1 3TL . . . C 2 15.389 -7.879 -9.751 1 25.27 ? N1 3TL 101 A 1 HETATM 27 C C3 3TL . . . C 2 16.202 -7.884 -7.393 1 25.04 ? C3 3TL 101 A 1 HETATM 28 C C4 3TL . . . C 2 17.524 -8.14 -8.123 1 25.23 ? C4 3TL 101 A 1 HETATM 29 C C5 3TL . . . C 2 17.958 -9.582 -8.37 1 25.2 ? C5 3TL 101 A 1 HETATM 30 C C9 3TL . . . C 2 18.157 -7.004 -8.959 1 26.09 ? C9 3TL 101 A 1 HETATM 31 C C6 3TL . . . C 2 19.221 -9.827 -9.212 1 25.37 ? C6 3TL 101 A 1 HETATM 32 C C8 3TL . . . C 2 19.282 -7.325 -9.965 1 25.57 ? C8 3TL 101 A 1 HETATM 33 C C7 3TL . . . C 2 20.022 -8.645 -9.77 1 25.26 ? C7 3TL 101 A 1 HETATM 34 N N51 3TL . . . C 2 11.678 -7.196 -6.742 1 25.62 ? N51 3TL 101 A 1 HETATM 35 C C51 3TL . . . C 2 11.841 -7.395 -8.215 1 25.52 ? C51 3TL 101 A 1 HETATM 36 C C52 3TL . . . C 2 12.862 -6.368 -8.741 1 25.72 ? C52 3TL 101 A 1 HETATM 37 O O51 3TL . . . C 2 12.389 -5.047 -8.42 1 25.05 ? O51 3TL 101 A 1 HETATM 38 C C53 3TL . . . C 2 10.556 -7.206 -9.03 1 25.05 ? C53 3TL 101 A 1 HETATM 39 C C54 3TL . . . C 2 9.409 -8.189 -8.803 1 24.82 ? C54 3TL 101 A 1 HETATM 40 C C55 3TL . . . C 2 8.223 -7.777 -7.933 1 24.58 ? C55 3TL 101 A 1 HETATM 41 C C59 3TL . . . C 2 9.389 -9.565 -9.477 1 24.68 ? C59 3TL 101 A 1 HETATM 42 C C56 3TL . . . C 2 6.936 -8.597 -8.043 1 24.15 ? C56 3TL 101 A 1 HETATM 43 C C58 3TL . . . C 2 8.148 -10.464 -9.376 1 24.53 ? C58 3TL 101 A 1 HETATM 44 C C57 3TL . . . C 2 7.031 -10.074 -8.403 1 24 ? C57 3TL 101 A 1 HETATM 45 N N52 3TL . . . C 2 9.462 -8.496 -4.263 1 25.38 ? N52 3TL 101 A 1 HETATM 46 C C60 3TL . . . C 2 10.725 -7.726 -4.445 1 24.61 ? C60 3TL 101 A 1 HETATM 47 C C61 3TL . . . C 2 11.283 -8.239 -5.767 1 24.92 ? C61 3TL 101 A 1 HETATM 48 O O52 3TL . . . C 2 11.448 -9.616 -6.067 1 25.06 ? O52 3TL 101 A 1 HETATM 49 C C62 3TL . . . C 2 11.64 -7.808 -3.224 1 24.08 ? C62 3TL 101 A 1 HETATM 50 C CG6 3TL . . . C 2 12.98 -7.058 -3.331 1 24.62 ? CG6 3TL 101 A 1 HETATM 51 C CG5 3TL . . . C 2 10.933 -7.405 -1.931 1 23.44 ? CG5 3TL 101 A 1 HETATM 52 N N54 3TL . . . C 2 6.156 -8.464 -2.58 1 29.73 ? N54 3TL 101 A 1 HETATM 53 C C68 3TL . . . C 2 6.911 -8.738 -3.839 1 27.82 ? C68 3TL 101 A 1 HETATM 54 C C69 3TL . . . C 2 8.181 -7.848 -3.886 1 25.98 ? C69 3TL 101 A 1 HETATM 55 O O54 3TL . . . C 2 8.17 -6.521 -3.393 1 24.93 ? O54 3TL 101 A 1 HETATM 56 C C70 3TL . . . C 2 5.903 -8.569 -4.986 1 27.43 ? C70 3TL 101 A 1 HETATM 57 C C81 3TL . . . C 2 6.7 -8.852 -1.26 1 31.44 ? C81 3TL 101 A 1 HETATM 58 O O58 3TL . . . C 2 7.95 -9.507 -1.082 1 33.06 ? O58 3TL 101 A 1 HETATM 59 O O59 3TL . . . C 2 5.875 -8.605 -0.115 1 33.49 ? O59 3TL 101 A 1 HETATM 60 C CA5 3TL . . . C 2 5.924 -9.512 1.005 1 35.34 ? CA5 3TL 101 A 1 HETATM 61 C C50 3TL . . . C 2 5.328 -10.933 0.846 1 35.79 ? C50 3TL 101 A 1 HETATM 62 C C63 3TL . . . C 2 5.267 -11.612 -0.536 1 34.78 ? C63 3TL 101 A 1 HETATM 63 C C64 3TL . . . C 2 3.977 -12.308 -0.959 1 34.76 ? C64 3TL 101 A 1 HETATM 64 C C65 3TL . . . C 2 2.747 -12.278 -0.034 1 35.65 ? C65 3TL 101 A 1 HETATM 65 C C66 3TL . . . C 2 2.92 -11.746 1.399 1 35.86 ? C66 3TL 101 A 1 HETATM 66 C C67 3TL . . . C 2 4.344 -11.472 1.89 1 35.71 ? C67 3TL 101 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 66 #