data_5W5X
#
_model_server_result.job_id            aE7XGOYpHuWSzX1fxfyAEQ 
_model_server_result.datetime_utc      '2024-11-05 00:32:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w5x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":302}' 
#
_entry.id    5W5X 
#
_exptl.entry_id    5W5X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5W5X 
_cell.length_a            68.309 
_cell.length_b            68.309 
_cell.length_c            288.643 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W5X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 133 L CYS 133 1_555 A SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 145 H CYS 145 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A NE2 HIS 188 L HIS 188 1_555 J ZN ZN . L ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc2 A NE2 HIS 188 L HIS 188 1_555 J ZN ZN . L ZN 307 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5W5X 
_atom_sites.fract_transf_matrix[1][1]    0.014639 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO L 1 301 1 EDO EDO . 
E 4 EDO L 1 302 3 EDO EDO . 
F 4 EDO L 1 303 4 EDO EDO . 
G 4 EDO L 1 304 5 EDO EDO . 
H 4 EDO L 1 305 6 EDO EDO . 
I 4 EDO L 1 306 10 EDO EDO . 
J 5 ZN L 1 307 1 ZN ZN . 
K 4 EDO H 1 301 7 EDO EDO . 
L 4 EDO H 1 302 8 EDO EDO . 
M 4 EDO H 1 303 9 EDO EDO . 
N 6 HOH L 1 401 37 HOH HOH . 
N 6 HOH L 2 402 10 HOH HOH . 
N 6 HOH L 3 403 75 HOH HOH . 
N 6 HOH L 4 404 36 HOH HOH . 
N 6 HOH L 5 405 73 HOH HOH . 
N 6 HOH L 6 406 59 HOH HOH . 
N 6 HOH L 7 407 85 HOH HOH . 
N 6 HOH L 8 408 60 HOH HOH . 
N 6 HOH L 9 409 81 HOH HOH . 
N 6 HOH L 10 410 6 HOH HOH . 
N 6 HOH L 11 411 58 HOH HOH . 
N 6 HOH L 12 412 96 HOH HOH . 
N 6 HOH L 13 413 97 HOH HOH . 
N 6 HOH L 14 414 29 HOH HOH . 
N 6 HOH L 15 415 26 HOH HOH . 
N 6 HOH L 16 416 22 HOH HOH . 
N 6 HOH L 17 417 101 HOH HOH . 
N 6 HOH L 18 418 57 HOH HOH . 
N 6 HOH L 19 419 94 HOH HOH . 
N 6 HOH L 20 420 67 HOH HOH . 
N 6 HOH L 21 421 3 HOH HOH . 
N 6 HOH L 22 422 88 HOH HOH . 
N 6 HOH L 23 423 79 HOH HOH . 
N 6 HOH L 24 424 77 HOH HOH . 
N 6 HOH L 25 425 89 HOH HOH . 
N 6 HOH L 26 426 70 HOH HOH . 
N 6 HOH L 27 427 21 HOH HOH . 
N 6 HOH L 28 428 20 HOH HOH . 
N 6 HOH L 29 429 99 HOH HOH . 
N 6 HOH L 30 430 63 HOH HOH . 
N 6 HOH L 31 431 4 HOH HOH . 
N 6 HOH L 32 432 35 HOH HOH . 
N 6 HOH L 33 433 28 HOH HOH . 
N 6 HOH L 34 434 82 HOH HOH . 
N 6 HOH L 35 435 69 HOH HOH . 
N 6 HOH L 36 436 76 HOH HOH . 
N 6 HOH L 37 437 9 HOH HOH . 
N 6 HOH L 38 438 95 HOH HOH . 
N 6 HOH L 39 439 19 HOH HOH . 
N 6 HOH L 40 440 1 HOH HOH . 
N 6 HOH L 41 441 5 HOH HOH . 
N 6 HOH L 42 442 52 HOH HOH . 
N 6 HOH L 43 443 34 HOH HOH . 
N 6 HOH L 44 444 2 HOH HOH . 
N 6 HOH L 45 445 18 HOH HOH . 
N 6 HOH L 46 446 54 HOH HOH . 
N 6 HOH L 47 447 53 HOH HOH . 
N 6 HOH L 48 448 7 HOH HOH . 
N 6 HOH L 49 449 43 HOH HOH . 
N 6 HOH L 50 450 41 HOH HOH . 
N 6 HOH L 51 451 33 HOH HOH . 
N 6 HOH L 52 452 55 HOH HOH . 
N 6 HOH L 53 453 46 HOH HOH . 
O 6 HOH H 1 401 25 HOH HOH . 
O 6 HOH H 2 402 74 HOH HOH . 
O 6 HOH H 3 403 64 HOH HOH . 
O 6 HOH H 4 404 90 HOH HOH . 
O 6 HOH H 5 405 84 HOH HOH . 
O 6 HOH H 6 406 66 HOH HOH . 
O 6 HOH H 7 407 98 HOH HOH . 
O 6 HOH H 8 408 78 HOH HOH . 
O 6 HOH H 9 409 38 HOH HOH . 
O 6 HOH H 10 410 23 HOH HOH . 
O 6 HOH H 11 411 62 HOH HOH . 
O 6 HOH H 12 412 56 HOH HOH . 
O 6 HOH H 13 413 32 HOH HOH . 
O 6 HOH H 14 414 27 HOH HOH . 
O 6 HOH H 15 415 51 HOH HOH . 
O 6 HOH H 16 416 24 HOH HOH . 
O 6 HOH H 17 417 15 HOH HOH . 
O 6 HOH H 18 418 72 HOH HOH . 
O 6 HOH H 19 419 71 HOH HOH . 
O 6 HOH H 20 420 12 HOH HOH . 
O 6 HOH H 21 421 91 HOH HOH . 
O 6 HOH H 22 422 92 HOH HOH . 
O 6 HOH H 23 423 86 HOH HOH . 
O 6 HOH H 24 424 13 HOH HOH . 
O 6 HOH H 25 425 100 HOH HOH . 
O 6 HOH H 26 426 39 HOH HOH . 
O 6 HOH H 27 427 44 HOH HOH . 
O 6 HOH H 28 428 50 HOH HOH . 
O 6 HOH H 29 429 17 HOH HOH . 
O 6 HOH H 30 430 83 HOH HOH . 
O 6 HOH H 31 431 16 HOH HOH . 
P 6 HOH A 1 201 30 HOH HOH . 
P 6 HOH A 2 202 61 HOH HOH . 
P 6 HOH A 3 203 68 HOH HOH . 
P 6 HOH A 4 204 49 HOH HOH . 
P 6 HOH A 5 205 80 HOH HOH . 
P 6 HOH A 6 206 45 HOH HOH . 
P 6 HOH A 7 207 87 HOH HOH . 
P 6 HOH A 8 208 93 HOH HOH . 
P 6 HOH A 9 209 48 HOH HOH . 
P 6 HOH A 10 210 65 HOH HOH . 
P 6 HOH A 11 211 40 HOH HOH . 
P 6 HOH A 12 212 31 HOH HOH . 
P 6 HOH A 13 213 42 HOH HOH . 
P 6 HOH A 14 214 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 -29.034 -10.767 -20.194 1 67.37 ? C1 EDO 302 L 1 
HETATM 2 O O1 EDO . . . E 4 -30.312 -10.801 -20.839 1 73.03 ? O1 EDO 302 L 1 
HETATM 3 C C2 EDO . . . E 4 -28.621 -12.185 -19.82 1 65.3 ? C2 EDO 302 L 1 
HETATM 4 O O2 EDO . . . E 4 -27.35 -12.156 -19.162 1 64.99 ? O2 EDO 302 L 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#