data_5W5Z
#
_model_server_result.job_id            JRWaTchBQ83rwldwGxUZcg 
_model_server_result.datetime_utc      '2025-01-20 16:47:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w5z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":303}' 
#
_entry.id    5W5Z 
#
_exptl.entry_id    5W5Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5W5Z 
_cell.length_a            67.863 
_cell.length_b            67.863 
_cell.length_c            264.243 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W5Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf2 A SG CYS 133 L CYS 133 1_555 A SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf4 B SG CYS 145 H CYS 145 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
covale ? covale1 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5W5Z 
_atom_sites.fract_transf_matrix[1][1]    0.014736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003784 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO L 1 301 1 EDO EDO . 
E 4 EDO L 1 302 2 EDO EDO . 
F 4 EDO L 1 303 3 EDO EDO . 
G 5 PG4 L 1 304 1 PG4 PG4 . 
H 5 PG4 L 1 305 2 PG4 PG4 . 
I 6 PGE H 1 301 2 PGE PGE . 
J 6 PGE H 1 302 3 PGE PGE . 
K 7 MES H 1 303 1 MES MES . 
L 8 HOH L 1 401 95 HOH HOH . 
L 8 HOH L 2 402 70 HOH HOH . 
L 8 HOH L 3 403 15 HOH HOH . 
L 8 HOH L 4 404 28 HOH HOH . 
L 8 HOH L 5 405 26 HOH HOH . 
L 8 HOH L 6 406 29 HOH HOH . 
L 8 HOH L 7 407 12 HOH HOH . 
L 8 HOH L 8 408 17 HOH HOH . 
L 8 HOH L 9 409 56 HOH HOH . 
L 8 HOH L 10 410 72 HOH HOH . 
L 8 HOH L 11 411 8 HOH HOH . 
L 8 HOH L 12 412 30 HOH HOH . 
L 8 HOH L 13 413 100 HOH HOH . 
L 8 HOH L 14 414 27 HOH HOH . 
L 8 HOH L 15 415 105 HOH HOH . 
L 8 HOH L 16 416 31 HOH HOH . 
L 8 HOH L 17 417 16 HOH HOH . 
L 8 HOH L 18 418 25 HOH HOH . 
L 8 HOH L 19 419 9 HOH HOH . 
L 8 HOH L 20 420 69 HOH HOH . 
L 8 HOH L 21 421 32 HOH HOH . 
L 8 HOH L 22 422 80 HOH HOH . 
L 8 HOH L 23 423 116 HOH HOH . 
L 8 HOH L 24 424 11 HOH HOH . 
L 8 HOH L 25 425 35 HOH HOH . 
L 8 HOH L 26 426 61 HOH HOH . 
L 8 HOH L 27 427 52 HOH HOH . 
L 8 HOH L 28 428 22 HOH HOH . 
L 8 HOH L 29 429 23 HOH HOH . 
L 8 HOH L 30 430 66 HOH HOH . 
L 8 HOH L 31 431 38 HOH HOH . 
L 8 HOH L 32 432 20 HOH HOH . 
L 8 HOH L 33 433 10 HOH HOH . 
L 8 HOH L 34 434 91 HOH HOH . 
L 8 HOH L 35 435 59 HOH HOH . 
L 8 HOH L 36 436 119 HOH HOH . 
L 8 HOH L 37 437 36 HOH HOH . 
L 8 HOH L 38 438 60 HOH HOH . 
L 8 HOH L 39 439 64 HOH HOH . 
L 8 HOH L 40 440 120 HOH HOH . 
L 8 HOH L 41 441 14 HOH HOH . 
L 8 HOH L 42 442 57 HOH HOH . 
L 8 HOH L 43 443 117 HOH HOH . 
L 8 HOH L 44 444 4 HOH HOH . 
L 8 HOH L 45 445 53 HOH HOH . 
L 8 HOH L 46 446 106 HOH HOH . 
L 8 HOH L 47 447 34 HOH HOH . 
L 8 HOH L 48 448 24 HOH HOH . 
L 8 HOH L 49 449 62 HOH HOH . 
L 8 HOH L 50 450 87 HOH HOH . 
L 8 HOH L 51 451 122 HOH HOH . 
L 8 HOH L 52 452 93 HOH HOH . 
L 8 HOH L 53 453 68 HOH HOH . 
L 8 HOH L 54 454 43 HOH HOH . 
L 8 HOH L 55 455 51 HOH HOH . 
L 8 HOH L 56 456 54 HOH HOH . 
L 8 HOH L 57 457 65 HOH HOH . 
L 8 HOH L 58 458 94 HOH HOH . 
L 8 HOH L 59 459 33 HOH HOH . 
L 8 HOH L 60 460 88 HOH HOH . 
L 8 HOH L 61 461 63 HOH HOH . 
L 8 HOH L 62 462 107 HOH HOH . 
L 8 HOH L 63 463 92 HOH HOH . 
L 8 HOH L 64 464 83 HOH HOH . 
L 8 HOH L 65 465 67 HOH HOH . 
L 8 HOH L 66 466 50 HOH HOH . 
M 8 HOH H 1 401 102 HOH HOH . 
M 8 HOH H 2 402 44 HOH HOH . 
M 8 HOH H 3 403 19 HOH HOH . 
M 8 HOH H 4 404 58 HOH HOH . 
M 8 HOH H 5 405 101 HOH HOH . 
M 8 HOH H 6 406 96 HOH HOH . 
M 8 HOH H 7 407 21 HOH HOH . 
M 8 HOH H 8 408 77 HOH HOH . 
M 8 HOH H 9 409 40 HOH HOH . 
M 8 HOH H 10 410 37 HOH HOH . 
M 8 HOH H 11 411 79 HOH HOH . 
M 8 HOH H 12 412 47 HOH HOH . 
M 8 HOH H 13 413 1 HOH HOH . 
M 8 HOH H 14 414 71 HOH HOH . 
M 8 HOH H 15 415 41 HOH HOH . 
M 8 HOH H 16 416 42 HOH HOH . 
M 8 HOH H 17 417 3 HOH HOH . 
M 8 HOH H 18 418 49 HOH HOH . 
M 8 HOH H 19 419 78 HOH HOH . 
M 8 HOH H 20 420 86 HOH HOH . 
M 8 HOH H 21 421 5 HOH HOH . 
M 8 HOH H 22 422 18 HOH HOH . 
M 8 HOH H 23 423 7 HOH HOH . 
M 8 HOH H 24 424 74 HOH HOH . 
M 8 HOH H 25 425 2 HOH HOH . 
M 8 HOH H 26 426 82 HOH HOH . 
M 8 HOH H 27 427 39 HOH HOH . 
M 8 HOH H 28 428 55 HOH HOH . 
M 8 HOH H 29 429 84 HOH HOH . 
M 8 HOH H 30 430 85 HOH HOH . 
M 8 HOH H 31 431 45 HOH HOH . 
M 8 HOH H 32 432 76 HOH HOH . 
M 8 HOH H 33 433 48 HOH HOH . 
M 8 HOH H 34 434 75 HOH HOH . 
M 8 HOH H 35 435 46 HOH HOH . 
N 8 HOH A 1 201 121 HOH HOH . 
N 8 HOH A 2 202 81 HOH HOH . 
N 8 HOH A 3 203 90 HOH HOH . 
N 8 HOH A 4 204 115 HOH HOH . 
N 8 HOH A 5 205 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 -27.423 -12.328 -19.884 1 80.12 ? C1 EDO 303 L 1 
HETATM 2 O O1 EDO . . . F 4 -28.113 -12.602 -18.66 1 77.69 ? O1 EDO 303 L 1 
HETATM 3 C C2 EDO . . . F 4 -27.819 -10.949 -20.408 1 82.68 ? C2 EDO 303 L 1 
HETATM 4 O O2 EDO . . . F 4 -27.382 -10.792 -21.767 1 81.62 ? O2 EDO 303 L 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#