data_5W63 # _model_server_result.job_id YhngpSohpuZ3qVyLyz8BFQ _model_server_result.datetime_utc '2024-10-28 02:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5w63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5W63 # _exptl.entry_id 5W63 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5W63 _cell.length_a 48.963 _cell.length_b 58.49 _cell.length_c 71.984 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 58.49 71.984 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5W63 _atom_sites.fract_transf_matrix[1][1] 0.020424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 3 SO4 SO4 . E 3 EDO A 1 204 1 EDO EDO . F 3 EDO A 1 205 2 EDO EDO . G 3 EDO A 1 206 3 EDO EDO . H 3 EDO A 1 207 4 EDO EDO . I 4 HOH A 1 301 62 HOH HOH . I 4 HOH A 2 302 21 HOH HOH . I 4 HOH A 3 303 3 HOH HOH . I 4 HOH A 4 304 1 HOH HOH . I 4 HOH A 5 305 54 HOH HOH . I 4 HOH A 6 306 16 HOH HOH . I 4 HOH A 7 307 8 HOH HOH . I 4 HOH A 8 308 52 HOH HOH . I 4 HOH A 9 309 36 HOH HOH . I 4 HOH A 10 310 7 HOH HOH . I 4 HOH A 11 311 38 HOH HOH . I 4 HOH A 12 312 23 HOH HOH . I 4 HOH A 13 313 10 HOH HOH . I 4 HOH A 14 314 13 HOH HOH . I 4 HOH A 15 315 26 HOH HOH . I 4 HOH A 16 316 6 HOH HOH . I 4 HOH A 17 317 55 HOH HOH . I 4 HOH A 18 318 57 HOH HOH . I 4 HOH A 19 319 35 HOH HOH . I 4 HOH A 20 320 25 HOH HOH . I 4 HOH A 21 321 31 HOH HOH . I 4 HOH A 22 322 58 HOH HOH . I 4 HOH A 23 323 32 HOH HOH . I 4 HOH A 24 324 51 HOH HOH . I 4 HOH A 25 325 24 HOH HOH . I 4 HOH A 26 326 37 HOH HOH . I 4 HOH A 27 327 12 HOH HOH . I 4 HOH A 28 328 42 HOH HOH . I 4 HOH A 29 329 41 HOH HOH . I 4 HOH A 30 330 4 HOH HOH . I 4 HOH A 31 331 43 HOH HOH . I 4 HOH A 32 332 46 HOH HOH . I 4 HOH A 33 333 11 HOH HOH . I 4 HOH A 34 334 34 HOH HOH . I 4 HOH A 35 335 5 HOH HOH . I 4 HOH A 36 336 50 HOH HOH . I 4 HOH A 37 337 15 HOH HOH . I 4 HOH A 38 338 47 HOH HOH . I 4 HOH A 39 339 59 HOH HOH . I 4 HOH A 40 340 44 HOH HOH . I 4 HOH A 41 341 28 HOH HOH . I 4 HOH A 42 342 45 HOH HOH . I 4 HOH A 43 343 14 HOH HOH . I 4 HOH A 44 344 60 HOH HOH . I 4 HOH A 45 345 19 HOH HOH . I 4 HOH A 46 346 2 HOH HOH . I 4 HOH A 47 347 20 HOH HOH . I 4 HOH A 48 348 56 HOH HOH . I 4 HOH A 49 349 9 HOH HOH . I 4 HOH A 50 350 33 HOH HOH . I 4 HOH A 51 351 40 HOH HOH . I 4 HOH A 52 352 17 HOH HOH . I 4 HOH A 53 353 22 HOH HOH . I 4 HOH A 54 354 30 HOH HOH . I 4 HOH A 55 355 49 HOH HOH . I 4 HOH A 56 356 48 HOH HOH . I 4 HOH A 57 357 61 HOH HOH . I 4 HOH A 58 358 18 HOH HOH . I 4 HOH A 59 359 27 HOH HOH . I 4 HOH A 60 360 39 HOH HOH . I 4 HOH A 61 361 63 HOH HOH . I 4 HOH A 62 362 64 HOH HOH . I 4 HOH A 63 363 29 HOH HOH . I 4 HOH A 64 364 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 24.386 44.123 22.848 1 59.4 ? C1 EDO 206 A 1 HETATM 2 O O1 EDO . . . G 3 24.992 42.908 23.303 1 62.98 ? O1 EDO 206 A 1 HETATM 3 C C2 EDO . . . G 3 25.175 44.708 21.677 1 60.55 ? C2 EDO 206 A 1 HETATM 4 O O2 EDO . . . G 3 26.531 45.017 22.019 1 60.12 ? O2 EDO 206 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #