data_5W67
#
_model_server_result.job_id            dccvt51sjEg08qaRJvlxfg 
_model_server_result.datetime_utc      '2024-11-01 21:36:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5w67 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":302}' 
#
_entry.id    5W67 
#
_exptl.entry_id    5W67 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5W67 
_cell.length_a            44.065 
_cell.length_b            81.575 
_cell.length_c            116.098 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5W67 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 C C ARG 5 C ARG 5 1_555 C N ABA 6 C ABA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 C C ABA 6 C ABA 6 1_555 C N LEU 7 C LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 98 n n 
C1 C2 EDO sing 99 n n 
C1 H11 EDO sing 100 n n 
C1 H12 EDO sing 101 n n 
O1 HO1 EDO sing 102 n n 
C2 O2 EDO sing 103 n n 
C2 H21 EDO sing 104 n n 
C2 H22 EDO sing 105 n n 
O2 HO2 EDO sing 106 n n 
#
_atom_sites.entry_id                     5W67 
_atom_sites.fract_transf_matrix[1][1]    0.022694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO A 1 301 2 EDO EDO . 
E 4 EDO A 1 302 3 EDO EDO . 
F 4 EDO A 1 303 5 EDO EDO . 
G 4 EDO A 1 304 6 EDO EDO . 
H 4 EDO B 1 101 4 EDO EDO . 
I 4 EDO C 1 101 1 EDO EDO . 
J 5 HOH A 1 401 167 HOH HOH . 
J 5 HOH A 2 402 13 HOH HOH . 
J 5 HOH A 3 403 172 HOH HOH . 
J 5 HOH A 4 404 81 HOH HOH . 
J 5 HOH A 5 405 224 HOH HOH . 
J 5 HOH A 6 406 122 HOH HOH . 
J 5 HOH A 7 407 76 HOH HOH . 
J 5 HOH A 8 408 151 HOH HOH . 
J 5 HOH A 9 409 196 HOH HOH . 
J 5 HOH A 10 410 63 HOH HOH . 
J 5 HOH A 11 411 60 HOH HOH . 
J 5 HOH A 12 412 133 HOH HOH . 
J 5 HOH A 13 413 179 HOH HOH . 
J 5 HOH A 14 414 32 HOH HOH . 
J 5 HOH A 15 415 23 HOH HOH . 
J 5 HOH A 16 416 85 HOH HOH . 
J 5 HOH A 17 417 41 HOH HOH . 
J 5 HOH A 18 418 137 HOH HOH . 
J 5 HOH A 19 419 178 HOH HOH . 
J 5 HOH A 20 420 1 HOH HOH . 
J 5 HOH A 21 421 90 HOH HOH . 
J 5 HOH A 22 422 68 HOH HOH . 
J 5 HOH A 23 423 27 HOH HOH . 
J 5 HOH A 24 424 61 HOH HOH . 
J 5 HOH A 25 425 99 HOH HOH . 
J 5 HOH A 26 426 136 HOH HOH . 
J 5 HOH A 27 427 88 HOH HOH . 
J 5 HOH A 28 428 7 HOH HOH . 
J 5 HOH A 29 429 115 HOH HOH . 
J 5 HOH A 30 430 160 HOH HOH . 
J 5 HOH A 31 431 3 HOH HOH . 
J 5 HOH A 32 432 127 HOH HOH . 
J 5 HOH A 33 433 59 HOH HOH . 
J 5 HOH A 34 434 47 HOH HOH . 
J 5 HOH A 35 435 92 HOH HOH . 
J 5 HOH A 36 436 117 HOH HOH . 
J 5 HOH A 37 437 145 HOH HOH . 
J 5 HOH A 38 438 71 HOH HOH . 
J 5 HOH A 39 439 191 HOH HOH . 
J 5 HOH A 40 440 38 HOH HOH . 
J 5 HOH A 41 441 2 HOH HOH . 
J 5 HOH A 42 442 28 HOH HOH . 
J 5 HOH A 43 443 164 HOH HOH . 
J 5 HOH A 44 444 15 HOH HOH . 
J 5 HOH A 45 445 159 HOH HOH . 
J 5 HOH A 46 446 77 HOH HOH . 
J 5 HOH A 47 447 132 HOH HOH . 
J 5 HOH A 48 448 148 HOH HOH . 
J 5 HOH A 49 449 64 HOH HOH . 
J 5 HOH A 50 450 40 HOH HOH . 
J 5 HOH A 51 451 143 HOH HOH . 
J 5 HOH A 52 452 18 HOH HOH . 
J 5 HOH A 53 453 95 HOH HOH . 
J 5 HOH A 54 454 114 HOH HOH . 
J 5 HOH A 55 455 103 HOH HOH . 
J 5 HOH A 56 456 69 HOH HOH . 
J 5 HOH A 57 457 34 HOH HOH . 
J 5 HOH A 58 458 79 HOH HOH . 
J 5 HOH A 59 459 62 HOH HOH . 
J 5 HOH A 60 460 35 HOH HOH . 
J 5 HOH A 61 461 174 HOH HOH . 
J 5 HOH A 62 462 128 HOH HOH . 
J 5 HOH A 63 463 157 HOH HOH . 
J 5 HOH A 64 464 93 HOH HOH . 
J 5 HOH A 65 465 109 HOH HOH . 
J 5 HOH A 66 466 9 HOH HOH . 
J 5 HOH A 67 467 45 HOH HOH . 
J 5 HOH A 68 468 153 HOH HOH . 
J 5 HOH A 69 469 50 HOH HOH . 
J 5 HOH A 70 470 19 HOH HOH . 
J 5 HOH A 71 471 26 HOH HOH . 
J 5 HOH A 72 472 190 HOH HOH . 
J 5 HOH A 73 473 101 HOH HOH . 
J 5 HOH A 74 474 142 HOH HOH . 
J 5 HOH A 75 475 30 HOH HOH . 
J 5 HOH A 76 476 171 HOH HOH . 
J 5 HOH A 77 477 163 HOH HOH . 
J 5 HOH A 78 478 112 HOH HOH . 
J 5 HOH A 79 479 215 HOH HOH . 
J 5 HOH A 80 480 184 HOH HOH . 
J 5 HOH A 81 481 11 HOH HOH . 
J 5 HOH A 82 482 43 HOH HOH . 
J 5 HOH A 83 483 138 HOH HOH . 
J 5 HOH A 84 484 39 HOH HOH . 
J 5 HOH A 85 485 37 HOH HOH . 
J 5 HOH A 86 486 135 HOH HOH . 
J 5 HOH A 87 487 107 HOH HOH . 
J 5 HOH A 88 488 21 HOH HOH . 
J 5 HOH A 89 489 123 HOH HOH . 
J 5 HOH A 90 490 20 HOH HOH . 
J 5 HOH A 91 491 168 HOH HOH . 
J 5 HOH A 92 492 106 HOH HOH . 
J 5 HOH A 93 493 55 HOH HOH . 
J 5 HOH A 94 494 202 HOH HOH . 
J 5 HOH A 95 495 129 HOH HOH . 
J 5 HOH A 96 496 169 HOH HOH . 
J 5 HOH A 97 497 57 HOH HOH . 
J 5 HOH A 98 498 25 HOH HOH . 
J 5 HOH A 99 499 113 HOH HOH . 
J 5 HOH A 100 500 29 HOH HOH . 
J 5 HOH A 101 501 156 HOH HOH . 
J 5 HOH A 102 502 70 HOH HOH . 
J 5 HOH A 103 503 170 HOH HOH . 
J 5 HOH A 104 504 84 HOH HOH . 
J 5 HOH A 105 505 111 HOH HOH . 
J 5 HOH A 106 506 166 HOH HOH . 
J 5 HOH A 107 507 24 HOH HOH . 
J 5 HOH A 108 508 33 HOH HOH . 
J 5 HOH A 109 509 16 HOH HOH . 
J 5 HOH A 110 510 86 HOH HOH . 
J 5 HOH A 111 511 183 HOH HOH . 
J 5 HOH A 112 512 165 HOH HOH . 
J 5 HOH A 113 513 199 HOH HOH . 
J 5 HOH A 114 514 31 HOH HOH . 
J 5 HOH A 115 515 44 HOH HOH . 
J 5 HOH A 116 516 154 HOH HOH . 
J 5 HOH A 117 517 194 HOH HOH . 
J 5 HOH A 118 518 5 HOH HOH . 
J 5 HOH A 119 519 216 HOH HOH . 
J 5 HOH A 120 520 72 HOH HOH . 
J 5 HOH A 121 521 83 HOH HOH . 
J 5 HOH A 122 522 180 HOH HOH . 
J 5 HOH A 123 523 89 HOH HOH . 
J 5 HOH A 124 524 195 HOH HOH . 
J 5 HOH A 125 525 176 HOH HOH . 
J 5 HOH A 126 526 56 HOH HOH . 
J 5 HOH A 127 527 152 HOH HOH . 
J 5 HOH A 128 528 193 HOH HOH . 
J 5 HOH A 129 529 75 HOH HOH . 
J 5 HOH A 130 530 104 HOH HOH . 
J 5 HOH A 131 531 189 HOH HOH . 
J 5 HOH A 132 532 48 HOH HOH . 
J 5 HOH A 133 533 110 HOH HOH . 
J 5 HOH A 134 534 67 HOH HOH . 
J 5 HOH A 135 535 149 HOH HOH . 
J 5 HOH A 136 536 155 HOH HOH . 
J 5 HOH A 137 537 198 HOH HOH . 
J 5 HOH A 138 538 120 HOH HOH . 
J 5 HOH A 139 539 119 HOH HOH . 
J 5 HOH A 140 540 213 HOH HOH . 
J 5 HOH A 141 541 150 HOH HOH . 
J 5 HOH A 142 542 187 HOH HOH . 
J 5 HOH A 143 543 182 HOH HOH . 
J 5 HOH A 144 544 192 HOH HOH . 
J 5 HOH A 145 545 201 HOH HOH . 
J 5 HOH A 146 546 73 HOH HOH . 
J 5 HOH A 147 547 217 HOH HOH . 
J 5 HOH A 148 548 125 HOH HOH . 
J 5 HOH A 149 549 185 HOH HOH . 
J 5 HOH A 150 550 118 HOH HOH . 
J 5 HOH A 151 551 147 HOH HOH . 
J 5 HOH A 152 552 97 HOH HOH . 
J 5 HOH A 153 553 188 HOH HOH . 
J 5 HOH A 154 554 121 HOH HOH . 
K 5 HOH B 1 201 78 HOH HOH . 
K 5 HOH B 2 202 94 HOH HOH . 
K 5 HOH B 3 203 91 HOH HOH . 
K 5 HOH B 4 204 6 HOH HOH . 
K 5 HOH B 5 205 8 HOH HOH . 
K 5 HOH B 6 206 220 HOH HOH . 
K 5 HOH B 7 207 65 HOH HOH . 
K 5 HOH B 8 208 4 HOH HOH . 
K 5 HOH B 9 209 139 HOH HOH . 
K 5 HOH B 10 210 98 HOH HOH . 
K 5 HOH B 11 211 17 HOH HOH . 
K 5 HOH B 12 212 211 HOH HOH . 
K 5 HOH B 13 213 102 HOH HOH . 
K 5 HOH B 14 214 144 HOH HOH . 
K 5 HOH B 15 215 53 HOH HOH . 
K 5 HOH B 16 216 66 HOH HOH . 
K 5 HOH B 17 217 210 HOH HOH . 
K 5 HOH B 18 218 108 HOH HOH . 
K 5 HOH B 19 219 161 HOH HOH . 
K 5 HOH B 20 220 22 HOH HOH . 
K 5 HOH B 21 221 58 HOH HOH . 
K 5 HOH B 22 222 12 HOH HOH . 
K 5 HOH B 23 223 181 HOH HOH . 
K 5 HOH B 24 224 49 HOH HOH . 
K 5 HOH B 25 225 36 HOH HOH . 
K 5 HOH B 26 226 209 HOH HOH . 
K 5 HOH B 27 227 175 HOH HOH . 
K 5 HOH B 28 228 74 HOH HOH . 
K 5 HOH B 29 229 82 HOH HOH . 
K 5 HOH B 30 230 54 HOH HOH . 
K 5 HOH B 31 231 87 HOH HOH . 
K 5 HOH B 32 232 223 HOH HOH . 
K 5 HOH B 33 233 100 HOH HOH . 
K 5 HOH B 34 234 146 HOH HOH . 
K 5 HOH B 35 235 46 HOH HOH . 
K 5 HOH B 36 236 52 HOH HOH . 
K 5 HOH B 37 237 208 HOH HOH . 
K 5 HOH B 38 238 10 HOH HOH . 
K 5 HOH B 39 239 173 HOH HOH . 
K 5 HOH B 40 240 219 HOH HOH . 
K 5 HOH B 41 241 14 HOH HOH . 
K 5 HOH B 42 242 130 HOH HOH . 
K 5 HOH B 43 243 207 HOH HOH . 
K 5 HOH B 44 244 124 HOH HOH . 
K 5 HOH B 45 245 131 HOH HOH . 
K 5 HOH B 46 246 42 HOH HOH . 
K 5 HOH B 47 247 177 HOH HOH . 
K 5 HOH B 48 248 197 HOH HOH . 
K 5 HOH B 49 249 200 HOH HOH . 
K 5 HOH B 50 250 204 HOH HOH . 
K 5 HOH B 51 251 158 HOH HOH . 
K 5 HOH B 52 252 162 HOH HOH . 
K 5 HOH B 53 253 222 HOH HOH . 
K 5 HOH B 54 254 203 HOH HOH . 
K 5 HOH B 55 255 218 HOH HOH . 
K 5 HOH B 56 256 80 HOH HOH . 
K 5 HOH B 57 257 141 HOH HOH . 
K 5 HOH B 58 258 206 HOH HOH . 
K 5 HOH B 59 259 205 HOH HOH . 
K 5 HOH B 60 260 140 HOH HOH . 
K 5 HOH B 61 261 186 HOH HOH . 
K 5 HOH B 62 262 126 HOH HOH . 
L 5 HOH C 1 201 105 HOH HOH . 
L 5 HOH C 2 202 134 HOH HOH . 
L 5 HOH C 3 203 51 HOH HOH . 
L 5 HOH C 4 204 96 HOH HOH . 
L 5 HOH C 5 205 212 HOH HOH . 
L 5 HOH C 6 206 214 HOH HOH . 
L 5 HOH C 7 207 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 15.514 -20.185 -1.13 1 54.75 ? C1 EDO 302 A 1 
HETATM 2 O O1 EDO . . . E 4 14.262 -19.658 -1.585 1 55.24 ? O1 EDO 302 A 1 
HETATM 3 C C2 EDO . . . E 4 16.422 -19.037 -0.707 1 55.15 ? C2 EDO 302 A 1 
HETATM 4 O O2 EDO . . . E 4 15.783 -18.285 0.33 1 56.15 ? O2 EDO 302 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#